tests.pocketutils.tools.test_unit_tools.TestUnitTools.test_round_to_sigfigs() - Code Metrics - Inspection of "fix: various" - dmyersturnbull/pocketutils - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Push — main ( a79885...50e5ea )

by Douglas

created 2021-08-04 17:47 UTC

TestUnitTools.test_round_to_sigfigs() A

↳ Parent: tests.pocketutils.tools.test_unit_tools

Complexity

Conditions

Size

Total Lines	6
Code Lines	6

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	1
eloc	6
nop	1
dl	0
loc	6
rs	10
c	0
b	0
f	0

import pytest


from pocketutils.core.chars import *

from pocketutils.tools.unit_tools import *


raises = pytest.raises


class TestUnitTools:

    def test_delta_time_to_str(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.delta_time_to_str

        assert f(15) == "15s"
        assert f(313) == "5.22min"
        assert f(15, Chars.narrownbsp) == "15" + Chars.narrownbsp + "s"
        assert f(15 * 60) == "15min"
        assert f(15 * 60 + 5) == "15.08min"
        assert f(15 * 60 * 60 + 5 * 60) == "15.08hr"

    def test_ms_to_minsec(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.ms_to_minsec

        assert f(15) == "15ms"
        assert f(15 * 1000) == "00:15"
        assert f(15 * 60 * 1000) == "15:00"
        assert f(15 * 60 * 60 * 1000) == "15:00:00"
        assert f(15 * 24 * 60 * 60 * 1000) == "15d:00:00:00"

    def test_round_to_sigfigs(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.round_to_sigfigs

        assert str(f(0.0012, 3)) == "0.0012"
        assert str(f(0.0012, 1)) == "0.001"
        assert str(f(0.0012 / 1000 / 1000, 3)) == "1.2e-09"
        assert str(f(0.0012 / 1000 / 1000, 1)) == "1e-09"

    def test_format_micromolar(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.format_micromolar

        assert f(1.2) == "1.2µM"
        assert f(1.2, space=Chars.narrownbsp) == "1.2" + Chars.narrownbsp + "µM"
        assert f(0.0012) == "1.2nM"
        assert f(0.0012 / 1000) == "1.2pM"
        assert f(0.0012 / 1e6) == "1.2fM"
        assert f(9999) == "9.999mM"
        assert f(1000 * 1000) == "1M"
        assert f(9999999) == "10M"

    def test_dose_to_micromolar(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.concentration_to_micromolar

        assert f(55, "M") == 55 * 1e6
        assert f(55, "mM") == 55 * 1e3
        assert f(55, "uM") == 55
        assert f(-55, "uM") == -55
        assert f(55, "µM") == 55
        assert f(55, "nM") * 1e3 == 55
        assert f(-55, "nM") * 1e3 == -55
        assert pytest.approx(f(-55, "nM") * 1e3, -55)
        assert pytest.approx(f(55, "pM") * 1e6, 55)
        assert pytest.approx(f(55, "fM") * 1e9, 55)

    def test_extract_dose(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.extract_micromolar

        assert f("abc 55 nM") == 55 / 1000
        assert f("abc 55{}uM".format(Chars.narrownbsp)) == 55
        assert f("abc 55 uM") == 55
        assert f("a.55bc 55uM") == 55

    def test_split_drug_dose(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        f = UnitTools.split_species_micromolar

        assert f("abc 55 nM") == ("abc", 55 / 1000)
        assert f("abc 55{}uM".format(Chars.narrownbsp)) == ("abc", 55)
        assert f("abc 55 uM") == ("abc", 55)
        assert f("a.55bc 55uM") == ("a.55bc", 55)
        assert f("") == ("", None)
        assert f("a.55bc") == ("a.55bc", None)


if __name__ == "__main__":
    pytest.main()


1			import pytest
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing module docstring Loading history... introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Unable to import 'pytest' Loading history...
2
3			from pocketutils.core.chars import *
			0 ignored issues – show Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report The usage of wildcard imports like `pocketutils.core.chars` should generally be avoided. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `Any` was imported with wildcard, but is not used. Loading history...
4			from pocketutils.tools.unit_tools import *
			0 ignored issues – show Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report The usage of wildcard imports like `pocketutils.tools.unit_tools` should generally be avoided. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `logging` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `math` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `re` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `logger` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `Optional` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `SupportsFloat` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `Tuple` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `Union` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `OutOfRangeError` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `StringPatternError` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `nicesize` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `BaseTools` was imported with wildcard, but is not used. Loading history... Unused Code introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report `StringTools` was imported with wildcard, but is not used. Loading history...
5
6			raises = pytest.raises
7
8
9			class TestUnitTools:
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
10			def test_delta_time_to_str(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
11			f = UnitTools.delta_time_to_str
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
12			assert f(15) == "15s"
13			assert f(313) == "5.22min"
14			assert f(15, Chars.narrownbsp) == "15" + Chars.narrownbsp + "s"
15			assert f(15 * 60) == "15min"
16			assert f(15 * 60 + 5) == "15.08min"
17			assert f(15 * 60 * 60 + 5 * 60) == "15.08hr"
18
19			def test_ms_to_minsec(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
20			f = UnitTools.ms_to_minsec
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
21			assert f(15) == "15ms"
22			assert f(15 * 1000) == "00:15"
23			assert f(15 * 60 * 1000) == "15:00"
24			assert f(15 * 60 * 60 * 1000) == "15:00:00"
25			assert f(15 * 24 * 60 * 60 * 1000) == "15d:00:00:00"
26
27			def test_round_to_sigfigs(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
28			f = UnitTools.round_to_sigfigs
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
29			assert str(f(0.0012, 3)) == "0.0012"
30			assert str(f(0.0012, 1)) == "0.001"
31			assert str(f(0.0012 / 1000 / 1000, 3)) == "1.2e-09"
32			assert str(f(0.0012 / 1000 / 1000, 1)) == "1e-09"
33
34			def test_format_micromolar(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
35			f = UnitTools.format_micromolar
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
36			assert f(1.2) == "1.2µM"
37			assert f(1.2, space=Chars.narrownbsp) == "1.2" + Chars.narrownbsp + "µM"
38			assert f(0.0012) == "1.2nM"
39			assert f(0.0012 / 1000) == "1.2pM"
40			assert f(0.0012 / 1e6) == "1.2fM"
41			assert f(9999) == "9.999mM"
42			assert f(1000 * 1000) == "1M"
43			assert f(9999999) == "10M"
44
45			def test_dose_to_micromolar(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
46			f = UnitTools.concentration_to_micromolar
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
47			assert f(55, "M") == 55 * 1e6
48			assert f(55, "mM") == 55 * 1e3
49			assert f(55, "uM") == 55
50			assert f(-55, "uM") == -55
51			assert f(55, "µM") == 55
52			assert f(55, "nM") * 1e3 == 55
53			assert f(-55, "nM") * 1e3 == -55
54			assert pytest.approx(f(-55, "nM") * 1e3, -55)
55			assert pytest.approx(f(55, "pM") * 1e6, 55)
56			assert pytest.approx(f(55, "fM") * 1e9, 55)
57
58			def test_extract_dose(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
59			f = UnitTools.extract_micromolar
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
60			assert f("abc 55 nM") == 55 / 1000
61			assert f("abc 55{}uM".format(Chars.narrownbsp)) == 55
62			assert f("abc 55 uM") == 55
63			assert f("a.55bc 55uM") == 55
64
65			def test_split_drug_dose(self):
			0 ignored issues – show introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
66			f = UnitTools.split_species_micromolar
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 05:25 UTC by Report Bug Copy Issue Report Variable name "f" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
67			assert f("abc 55 nM") == ("abc", 55 / 1000)
68			assert f("abc 55{}uM".format(Chars.narrownbsp)) == ("abc", 55)
69			assert f("abc 55 uM") == ("abc", 55)
70			assert f("a.55bc 55uM") == ("a.55bc", 55)
71			assert f("") == ("", None)
72			assert f("a.55bc") == ("a.55bc", None)
73
74
75			if __name__ == "__main__":
76			pytest.main()
77

dmyersturnbull / pocketutils

Push — main ( a79885...50e5ea )

TestUnitTools.test_round_to_sigfigs() A

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