tests.analysis.test_prep

Complexity

Total Complexity

1

Size/Duplication

Total Lines	20
Duplicated Lines	0 %

Importance

Changes

0

1 Method

Rating	Name	Duplication	Size	Complexity
A	TestPrep.test_matrix_prep()	0	5	1

import pytest

Unable to import 'pytest'

Missing module docstring

from pocketutils.core.dot_dict import NestedDotDict

Unable to import 'pocketutils.core.dot_dict'

Unused NestedDotDict imported from pocketutils.core.dot_dict

from mandos.analysis.io_defns import *

PsiProjectedDf was imported with wildcard, but is not used.

TypedDfs was imported with wildcard, but is not used.

Optional was imported with wildcard, but is not used.

Union was imported with wildcard, but is not used.

Set was imported with wildcard, but is not used.

Sequence was imported with wildcard, but is not used.

Dict was imported with wildcard, but is not used.

Collection was imported with wildcard, but is not used.

cycle was imported with wildcard, but is not used.

defaultdict was imported with wildcard, but is not used.

EnrichmentDf was imported with wildcard, but is not used.

ConcordanceDf was imported with wildcard, but is not used.

ScoreDf was imported with wildcard, but is not used.

SimilarityDfShortForm was imported with wildcard, but is not used.

SimilarityDfLongForm was imported with wildcard, but is not used.

pd was imported with wildcard, but is not used.

np was imported with wildcard, but is not used.

math was imported with wildcard, but is not used.

The usage of wildcard imports like mandos.analysis.io_defns should generally be avoided.

Tuple was imported with wildcard, but is not used.

from mandos.analysis.prepping import MatrixPrep

from .. import get_test_resource


class TestPrep:

Missing class docstring

    def test_matrix_prep(self):

Missing function or method docstring

This method could be written as a function/class method.

        df = MatrixPrep("phi").from_files([get_test_resource("shortform-matrix.csv")])

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert len(df) == 6
        assert df["key"].unique().tolist() == ["shortform-matrix"]
        assert df["type"].unique().tolist() == ["phi"]


if __name__ == "__main__":
    pytest.main()