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tests.search.chembl.test_go_search   A

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Complexity

Total Complexity 1

Size/Duplication

Total Lines 21
Duplicated Lines 0 %

Importance

Changes 0
Metric Value
eloc 14
dl 0
loc 21
rs 10
c 0
b 0
f 0
wmc 1

1 Method

Rating   Name   Duplication   Size   Complexity  
A TestGoSearch.test_find() 0 7 1
1 
import pytest
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from mandos.cli import Commands

            


            
                                                        
            
                                    
            
            

                
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from mandos.search.chembl.go_search import GoType

            


            
                                                        
            
                                    
            
            

                
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from .. import get_test_resource

            


            
                                                        
            
                                    
            
            

                
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class TestGoSearch:

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                    
                        

                            
                            
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    def test_find(self):

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                                                                        
                        

                            
                            
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This method could be written as a function/class method.
                                            

                    
                                            

                            

                            

                                
                                    
                                
                            


                            
If a method does not access any attributes of the class, it could also be
implemented as a function or static method. This can help improve readability.
For example


class Foo:
    def some_method(self, x, y):
        return x + y;





could be written as


class Foo:
    @classmethod
    def some_method(cls, x, y):
        return x + y;





                        

                                                    

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        df, triples = Commands.go_search(get_test_resource("inchis.txt"), GoType.function)

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                    
                        

                            
                            
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Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)
                                            

                    
                                            

                            

                            

                                
                                    
                                
                            


                            
This check looks for invalid names for a range of different identifiers.


You can set regular expressions to which the identifiers must conform if the
defaults do not match your requirements.


If your project includes a Pylint configuration file, the settings contained in
that file take precedence.


To find out more about Pylint, please refer to their site.


                        

                                                    

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        assert len(df) == 20

            


            
                                                        
            
                                    
            
            

                
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        assert len(triples) == 20

            


            
                                                        
            
                                    
            
            

                
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        # TODO not very complete

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                    
                        

                            
                            
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TODO and FIXME comments should generally be avoided.
                                                                                                

                    
                                                    

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        assert {t.compound_name.lower() for t in triples} == {"alprazolam"}

            


            
                                                        
            
                                    
            
            

                
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        assert {t.predicate for t in triples} == {"has GO function term"}

            


            
                                                        
            
                                    
            
            

                
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if __name__ == "__main__":

            


            
                                                        
            
                                    
            
            

                
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    pytest.main()

            


            
                                                        
            
                                    
            
            

                
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