mandos.model.apis.chembl_support.chembl_activity.DataValidityComment.resolve() - Code Metrics - Inspection of "feat: refactor" - dmyersturnbull/mandos - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Push — main ( 83a9fb...fa90c4 )

by Douglas

created 2021-09-29 03:06 UTC

DataValidityComment.resolve() B

↳ Parent: mandos.model.apis.chembl_support.chembl_activity

Complexity

Conditions

Size

Total Lines	16
Code Lines	15

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	6
eloc	15
nop	2
dl	0
loc	16
rs	8.6666
c	0
b	0
f	0

from __future__ import annotations


import enum
from typing import Set, Union

from mandos.model.utils import CleverEnum


class ActivityRelation(CleverEnum):

    lt = enum.auto()
    gt = enum.auto()
    le = enum.auto()
    ge = enum.auto()
    eq = enum.auto()
    approx = enum.auto()

    @classmethod
    def of(cls, name: Union[int, str]) -> CleverEnum:

        return super().of(
            {
                "<": "lt",
                ">": "gt",
                "=": "eq",
                "~": "approx",
                "<=": "le",
                ">=": "ge",
            }.get(name, name)
        )


class DataValidityComment(CleverEnum):

    potential_missing_data = enum.auto()
    potential_transcription_error = enum.auto()
    potential_author_error = enum.auto()
    manually_validated = enum.auto()
    outside_typical_range = enum.auto()
    non_standard_unit_for_type = enum.auto()
    author_confirmed_error = enum.auto()

    @property
    def is_positive(self) -> bool:

        return self in DataValidityComment.positive_comments()

    @property
    def is_negative(self) -> bool:

        return self in DataValidityComment.negative_comments()

    @classmethod
    def positive_comments(cls) -> Set[DataValidityComment]:

        return {DataValidityComment.manually_validated}

    @classmethod
    def negative_comments(cls) -> Set[DataValidityComment]:

        return {
            DataValidityComment.potential_missing_data,
            DataValidityComment.potential_transcription_error,
            DataValidityComment.potential_author_error,
            DataValidityComment.outside_typical_range,
            DataValidityComment.non_standard_unit_for_type,
            DataValidityComment.author_confirmed_error,
        }


class AssayType(enum.Enum):

    binding = enum.auto()
    functional = enum.auto()
    adme = enum.auto()
    physicochemical = enum.auto()

    @property
    def character(self) -> str:

        return {
            AssayType.binding: "B",
            AssayType.functional: "F",
            AssayType.adme: "A",
            AssayType.physicochemical: "P",
        }[self]


__all__ = [
    "AssayType",
    "DataValidityComment",
    "ActivityRelation",
]


1			from __future__ import annotations
			0 ignored issues – show introduced 2021-08-02 23:39 UTC by Report Bug Copy Issue Report Missing module docstring Loading history...
2
3			import enum
4			from typing import Set, Union
5
6			from mandos.model.utils import CleverEnum
7
8
9			class ActivityRelation(CleverEnum):
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
10			lt = enum.auto()
11			gt = enum.auto()
12			le = enum.auto()
13			ge = enum.auto()
14			eq = enum.auto()
15			approx = enum.auto()
16
17			@classmethod
18			def of(cls, name: Union[int, str]) -> CleverEnum:
			0 ignored issues – show Bug introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Parameters differ from overridden 'of' method Loading history...
19			return super().of(
20			{
21			"<": "lt",
22			">": "gt",
23			"=": "eq",
24			"~": "approx",
25			"<=": "le",
26			">=": "ge",
27			}.get(name, name)
28			)
29
30
31			class DataValidityComment(CleverEnum):
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
32			potential_missing_data = enum.auto()
33			potential_transcription_error = enum.auto()
34			potential_author_error = enum.auto()
35			manually_validated = enum.auto()
36			outside_typical_range = enum.auto()
37			non_standard_unit_for_type = enum.auto()
38			author_confirmed_error = enum.auto()
39
40			@property
41			def is_positive(self) -> bool:
			0 ignored issues – show introduced 2021-08-07 00:15 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
42			return self in DataValidityComment.positive_comments()
43
44			@property
45			def is_negative(self) -> bool:
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
46			return self in DataValidityComment.negative_comments()
47
48			@classmethod
49			def positive_comments(cls) -> Set[DataValidityComment]:
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
50			return {DataValidityComment.manually_validated}
51
52			@classmethod
53			def negative_comments(cls) -> Set[DataValidityComment]:
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
54			return {
55			DataValidityComment.potential_missing_data,
56			DataValidityComment.potential_transcription_error,
57			DataValidityComment.potential_author_error,
58			DataValidityComment.outside_typical_range,
59			DataValidityComment.non_standard_unit_for_type,
60			DataValidityComment.author_confirmed_error,
61			}
62
63
64			class AssayType(enum.Enum):
			0 ignored issues – show introduced 2021-08-07 00:15 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
65			binding = enum.auto()
66			functional = enum.auto()
67			adme = enum.auto()
68			physicochemical = enum.auto()
69
70			@property
71			def character(self) -> str:
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
72			return {
73			AssayType.binding: "B",
74			AssayType.functional: "F",
75			AssayType.adme: "A",
76			AssayType.physicochemical: "P",
77			}[self]
78
79
80			__all__ = [
81			"AssayType",
82			"DataValidityComment",
83			"ActivityRelation",
84			]
85

dmyersturnbull / mandos

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DataValidityComment.resolve() B

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