mandos.entries._entry_utils

Complexity

Total Complexity

5

Size/Duplication

Total Lines	37
Duplicated Lines	0 %

Importance

Changes

0

5 Methods

Rating	Name	Duplication	Size	Complexity
A	EntryUtils.split()	0	3	1
A	EntryUtils.get_flags()	0	3	1
A	EntryUtils.get_trial_statuses()	0	3	1
A	EntryUtils.get_target_types()	0	3	1
A	EntryUtils.get_taxa()	0	4	1

from typing import Set, Sequence

Missing module docstring

from mandos.model.settings import MANDOS_SETTINGS
from mandos.model.apis.chembl_support.chembl_activity import DataValidityComment
from mandos.model.apis.chembl_support.chembl_targets import TargetType
from mandos.model.apis.pubchem_support.pubchem_models import ClinicalTrialsGovUtils
from mandos.model.taxonomy import Taxonomy
from mandos.model.taxonomy_caches import TaxonomyFactories


class EntryUtils:

Empty class docstring

    """ """

    @staticmethod
    def split(st: str) -> Set[str]:

Argument name "st" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

Missing function or method docstring

        return {s.strip() for s in st.split(",")}

    @staticmethod
    def get_taxa(taxa: str) -> Sequence[Taxonomy]:

Missing function or method docstring

        factory = TaxonomyFactories.from_uniprot(MANDOS_SETTINGS.taxonomy_cache_path)
        return [factory.load(str(taxon).strip()) for taxon in taxa.split(",")]

    @staticmethod
    def get_trial_statuses(st: str) -> Set[str]:

Missing function or method docstring

Argument name "st" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        return ClinicalTrialsGovUtils.resolve_statuses(st)

    @staticmethod
    def get_target_types(st: str) -> Set[str]:

Argument name "st" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

Missing function or method docstring

        return {s.name for s in TargetType.resolve(st)}

    @staticmethod
    def get_flags(st: str) -> Set[str]:

Argument name "st" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

Missing function or method docstring

        return {s.name for s in DataValidityComment.resolve(st)}


__all__ = ["EntryUtils"]