| 
                    1
                 | 
                                    
                                                     | 
                
                 | 
                """  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    2
                 | 
                                    
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                Command-line interface for mandos.  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    3
                 | 
                                    
                                                     | 
                
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                """  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    4
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                | 
                    5
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                                                     | 
                
                 | 
                from __future__ import annotations  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    6
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                    7
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                 | 
                import time  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    8
                 | 
                                    
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                from typing import Type  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    9
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                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    10
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                                                     | 
                
                 | 
                import typer  | 
            
                            
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    11
                 | 
                                    
                                                     | 
                
                 | 
                from loguru import logger  | 
            
                            
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    12
                 | 
                                    
                                                     | 
                
                 | 
                from pocketutils.core import DictNamespace  | 
            
                            
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    13
                 | 
                                    
                                                     | 
                
                 | 
                from pocketutils.misc.loguru_utils import FancyLoguru  | 
            
                            
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                | 
                    14
                 | 
                                    
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                 | 
                from pocketutils.tools.filesys_tools import FilesysTools  | 
            
                            
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                | 
                    15
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                 | 
                from pocketutils.tools.sys_tools import SystemTools  | 
            
                            
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                | 
                    16
                 | 
                                    
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                 | 
                from typer.models import CommandInfo  | 
            
                            
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                    17
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                | 
                    18
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                 | 
                from mandos.model.utils.globals import Globals  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    19
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                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    20
                 | 
                                    
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                 | 
                cli = typer.Typer()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    21
                 | 
                                    
                                                     | 
                
                 | 
                # .disable("chembl_webresource_client", "requests_cache", "urllib3", "numba") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    22
                 | 
                                    
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                 | 
                _filter = {"": "WARNING", "mandos": "TRACE"} | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    23
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                    24
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                | 
                    25
                 | 
                                    
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                def _msg(msg: str):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    26
                 | 
                                    
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                 | 
                    typer.echo(msg)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    27
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                    28
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                | 
                    29
                 | 
                                    
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                 | 
                def _err(msg: str):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    30
                 | 
                                    
                                                     | 
                
                 | 
                    msg = typer.style(msg, fg=typer.colors.RED)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    31
                 | 
                                    
                                                     | 
                
                 | 
                    typer.echo(msg, err=True)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    32
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                    33
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                | 
                    34
                 | 
                                    
                                                     | 
                
                 | 
                class CmdNamespace(DictNamespace):  | 
            
                            
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    35
                 | 
                                    
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                 | 
                    @classmethod  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    36
                 | 
                                    
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                 | 
                    def make(cls) -> CmdNamespace:  | 
            
                            
                    | 
                        
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    37
                 | 
                                    
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                 | 
                        from mandos.entry.calc_commands import CalcCommands  | 
            
                            
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    38
                 | 
                                    
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                 | 
                        from mandos.entry.entry_commands import Entries  | 
            
                            
                    | 
                        
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                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    39
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.entry.misc_commands import (  | 
            
                            
                    | 
                        
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                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    40
                 | 
                                    
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                 | 
                            MiscCommands,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    41
                 | 
                                    
                                                     | 
                
                 | 
                            _InsertedCommandListSingleton,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    42
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    43
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.entry.plot_commands import PlotCommands  | 
            
                            
                    | 
                        
                     | 
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                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    44
                 | 
                                    
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                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    45
                 | 
                                    
                                                     | 
                
                 | 
                        cli.registered_commands += [  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    46
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":document", callback=MiscCommands.document), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    47
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":search", callback=MiscCommands.search), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    48
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":init", callback=MiscCommands.init, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    49
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":settings", callback=MiscCommands.list_settings, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    50
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":fill", callback=MiscCommands.fill), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    51
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":cache:data", callback=MiscCommands.cache_data), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    52
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":cache:taxa", callback=MiscCommands.cache_taxa), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    53
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":cache:g2p", callback=MiscCommands.cache_g2p), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    54
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":cache:clear", callback=MiscCommands.cache_clear), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    55
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":export:taxa", callback=MiscCommands.export_taxa), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    56
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":concat", callback=MiscCommands.concat), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    57
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":filter", callback=MiscCommands.filter), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    58
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":export:copy", callback=MiscCommands.export_copy), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    59
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":export:state", callback=MiscCommands.export_state), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    60
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":export:reify", callback=MiscCommands.export_reify), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    61
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":export:db", callback=MiscCommands.export_db, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    62
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":init-db", callback=MiscCommands.init_db, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    63
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":serve", callback=MiscCommands.serve, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    64
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:enrichment", callback=CalcCommands.calc_enrichment), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    65
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:phi", callback=CalcCommands.calc_phi), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    66
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:psi", callback=CalcCommands.calc_psi), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    67
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:ecfp", callback=CalcCommands.calc_ecfp, hidden=True), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    68
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:psi-projection", callback=CalcCommands.calc_projection), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    69
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":calc:tau", callback=CalcCommands.calc_tau), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    70
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":plot:enrichment", callback=PlotCommands.plot_enrichment), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    71
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":plot:psi-projection", callback=PlotCommands.plot_projection), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    72
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":plot:psi-heatmap", callback=PlotCommands.plot_heatmap), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    73
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":plot:phi-vs-psi", callback=PlotCommands.plot_phi_psi), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    74
                 | 
                                    
                                                     | 
                
                 | 
                            CommandInfo(":plot:tau", callback=PlotCommands.plot_tau), | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    75
                 | 
                                    
                                                     | 
                
                 | 
                        ]  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    76
                 | 
                                    
                                                     | 
                
                 | 
                        commands = {c.name: c for c in cli.registered_commands} | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    77
                 | 
                                    
                                                     | 
                
                 | 
                        # Oh dear this is a nightmare  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    78
                 | 
                                    
                                                     | 
                
                 | 
                        # it's really hard to create typer commands with dynamically configured params --  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    79
                 | 
                                    
                                                     | 
                
                 | 
                        # we really need to rely on its inferring of params  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    80
                 | 
                                    
                                                     | 
                
                 | 
                        # that makes this really hard to do well  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    81
                 | 
                                    
                                                     | 
                
                 | 
                        for entry in Entries:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    82
                 | 
                                    
                                                     | 
                
                 | 
                            cmd = entry.cmd()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    83
                 | 
                                    
                                                     | 
                
                 | 
                            info = CommandInfo(cmd, callback=entry.run)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    84
                 | 
                                    
                                                     | 
                
                 | 
                            cli.registered_commands.append(info)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    85
                 | 
                                    
                                                     | 
                
                 | 
                            # print(f"Registered {entry.cmd()} to {entry}") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    86
                 | 
                                    
                                                     | 
                
                 | 
                            commands[cmd] = entry.run  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    87
                 | 
                                    
                                                     | 
                
                 | 
                        _InsertedCommandListSingleton.commands = cli.registered_commands  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    88
                 | 
                                    
                                                     | 
                
                 | 
                        return cls(**commands)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    89
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    90
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    91
                 | 
                                    
                                                     | 
                
                 | 
                class MandosCli:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    92
                 | 
                                    
                                                     | 
                
                 | 
                    """  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    93
                 | 
                                    
                                                     | 
                
                 | 
                    Global entry point for various stuff.  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    94
                 | 
                                    
                                                     | 
                
                 | 
                    """  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    95
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    96
                 | 
                                    
                                                     | 
                
                 | 
                    cli = cli  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    97
                 | 
                                    
                                                     | 
                
                 | 
                    commands = None  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    98
                 | 
                                    
                                                     | 
                
                 | 
                    log_setup: FancyLoguru = None  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    99
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    100
                 | 
                                    
                                                     | 
                
                 | 
                    @classmethod  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    101
                 | 
                                    
                                                     | 
                
                 | 
                    def as_library(cls) -> Type[MandosCli]:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    102
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.model.utils.setup import LOG_SETUP  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    103
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    104
                 | 
                                    
                                                     | 
                
                 | 
                        Globals.is_cli = False  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    105
                 | 
                                    
                                                     | 
                
                 | 
                        cls.log_setup = (  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    106
                 | 
                                    
                                                     | 
                
                 | 
                            LOG_SETUP.set_control(False)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    107
                 | 
                                    
                                                     | 
                
                 | 
                            .config_levels(  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    108
                 | 
                                    
                                                     | 
                
                 | 
                                levels=LOG_SETUP.defaults.levels_extended,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    109
                 | 
                                    
                                                     | 
                
                 | 
                                icons=LOG_SETUP.defaults.icons_extended,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    110
                 | 
                                    
                                                     | 
                
                 | 
                                colors=LOG_SETUP.defaults.colors_extended,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    111
                 | 
                                    
                                                     | 
                
                 | 
                            )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    112
                 | 
                                    
                                                     | 
                
                 | 
                            .add_log_methods()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    113
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    114
                 | 
                                    
                                                     | 
                
                 | 
                        cls.start()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    115
                 | 
                                    
                                                     | 
                
                 | 
                        cls.commands = CmdNamespace.make()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    116
                 | 
                                    
                                                     | 
                
                 | 
                        return cls  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    117
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    118
                 | 
                                    
                                                     | 
                
                 | 
                    @classmethod  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    119
                 | 
                                    
                                                     | 
                
                 | 
                    def as_cli(cls) -> Type[MandosCli]:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    120
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.model.utils.setup import LOG_SETUP  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    121
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    122
                 | 
                                    
                                                     | 
                
                 | 
                        Globals.is_cli = True  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    123
                 | 
                                    
                                                     | 
                
                 | 
                        cls.log_setup = LOG_SETUP.logger.remove(None)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    124
                 | 
                                    
                                                     | 
                
                 | 
                        cls.log_setup = (  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    125
                 | 
                                    
                                                     | 
                
                 | 
                            LOG_SETUP.set_control(True)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    126
                 | 
                                    
                                                     | 
                
                 | 
                            .config_levels(  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    127
                 | 
                                    
                                                     | 
                
                 | 
                                levels=LOG_SETUP.defaults.levels_extended,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    128
                 | 
                                    
                                                     | 
                
                 | 
                                icons=LOG_SETUP.defaults.icons_extended,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    129
                 | 
                                    
                                                     | 
                
                 | 
                                colors=LOG_SETUP.defaults.colors_red_green_safe,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    130
                 | 
                                    
                                                     | 
                
                 | 
                            )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    131
                 | 
                                    
                                                     | 
                
                 | 
                            .add_log_methods()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    132
                 | 
                                    
                                                     | 
                
                 | 
                            .config_main(fmt=LOG_SETUP.defaults.fmt_simplified, filter=_filter)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    133
                 | 
                                    
                                                     | 
                
                 | 
                            .intercept_std()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    134
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    135
                 | 
                                    
                                                     | 
                
                 | 
                        cls.start()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    136
                 | 
                                    
                                                     | 
                
                 | 
                        cls.commands = CmdNamespace.make()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    137
                 | 
                                    
                                                     | 
                
                 | 
                        cls.init_apis()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    138
                 | 
                                    
                                                     | 
                
                 | 
                        return cls  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    139
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    140
                 | 
                                    
                                                     | 
                
                 | 
                    @classmethod  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    141
                 | 
                                    
                                                     | 
                
                 | 
                    def init_apis(cls):  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    142
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.entry.api_singletons import Apis  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    143
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    144
                 | 
                                    
                                                     | 
                
                 | 
                        Apis.set_default()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    145
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    146
                 | 
                                    
                                                     | 
                
                 | 
                    @classmethod  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    147
                 | 
                                    
                                                     | 
                
                 | 
                    def start(cls):  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    148
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos import MandosMetadata  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    149
                 | 
                                    
                                                     | 
                
                 | 
                        from mandos.model.utils.setup import logger  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                                                                                                                            
                        
                         
                                                                                        
                                                                                            
                                                                                            
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    150
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    151
                 | 
                                    
                                                     | 
                
                 | 
                        if MandosMetadata.version is None:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    152
                 | 
                                    
                                                     | 
                
                 | 
                            logger.error("Could not load package metadata for mandos. Is it installed?") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    153
                 | 
                                    
                                                     | 
                
                 | 
                        else:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    154
                 | 
                                    
                                                     | 
                
                 | 
                            logger.info(f"Mandos v{MandosMetadata.version}") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    155
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                                                                
            
                                    
            
            
                | 
                    156
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    157
                 | 
                                    
                                                     | 
                
                 | 
                class MandosTyperCli:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                        
                            
            
                                    
            
            
                | 
                    158
                 | 
                                    
                                                     | 
                
                 | 
                    def __init__(self):  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    159
                 | 
                                    
                                                     | 
                
                 | 
                        self._mandos = None  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    160
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    161
                 | 
                                    
                                                     | 
                
                 | 
                    def main(self) -> None:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                        
                            
            
                                    
            
            
                | 
                    162
                 | 
                                    
                                                     | 
                
                 | 
                        try:  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    163
                 | 
                                    
                                                     | 
                
                 | 
                            self._mandos = MandosCli.as_cli()  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    164
                 | 
                                    
                                                     | 
                
                 | 
                            self._mandos.cli()  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    165
                 | 
                                    
                                                     | 
                
                 | 
                        except (KeyboardInterrupt, typer.Abort) as e:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                        
                            
            
                                    
            
            
                | 
                    166
                 | 
                                    
                                                     | 
                
                 | 
                            self._fail(e, abort=True)  | 
            
            
                                                                        
                            
            
                                    
            
            
                | 
                    167
                 | 
                                    
                                                     | 
                
                 | 
                            quit(1)  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    168
                 | 
                                    
                                                     | 
                
                 | 
                        except (SystemExit, typer.Exit) as e:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    169
                 | 
                                    
                                                     | 
                
                 | 
                            _err("Abnormal system exit.") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    170
                 | 
                                    
                                                     | 
                
                 | 
                            self._fail(e, abort=True)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    171
                 | 
                                    
                                                     | 
                
                 | 
                            quit(2)  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    172
                 | 
                                    
                                                     | 
                
                 | 
                        except BaseException as e:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                                                                        
                        
                         
                                                                                        
                                                                                            
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    173
                 | 
                                    
                                                     | 
                
                 | 
                            _err("Error.") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    174
                 | 
                                    
                                                     | 
                
                 | 
                            self._fail(e, abort=False)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    175
                 | 
                                    
                                                     | 
                
                 | 
                            quit(-1)  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    176
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    177
                 | 
                                    
                                                     | 
                
                 | 
                    def _fail(self, e: BaseException, *, abort: bool) -> None:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    178
                 | 
                                    
                                                     | 
                
                 | 
                        if not abort or True:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    179
                 | 
                                    
                                                     | 
                
                 | 
                            msg = (  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    180
                 | 
                                    
                                                     | 
                
                 | 
                                "\n".join(SystemTools.serialize_exception_msg(e))  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    181
                 | 
                                    
                                                     | 
                
                 | 
                                .replace("[ exc_info True ]", "") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    182
                 | 
                                    
                                                     | 
                
                 | 
                                .strip()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    183
                 | 
                                    
                                                     | 
                
                 | 
                            )  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    184
                 | 
                                    
                                                     | 
                
                 | 
                            if len(msg) > 0:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    185
                 | 
                                    
                                                     | 
                
                 | 
                                _err(f"< Command failed: {msg} >") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    186
                 | 
                                    
                                                     | 
                
                 | 
                            logger.opt(exception=True).critical(f"Command failed: {msg}") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    187
                 | 
                                    
                                                     | 
                
                 | 
                            self._dump_error(e)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    188
                 | 
                                    
                                                     | 
                
                 | 
                        if self._mandos and self._mandos.log_setup and self._mandos.log_setup.only_path:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    189
                 | 
                                    
                                                     | 
                
                 | 
                            log_path = self._mandos.log_setup.only_path  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    190
                 | 
                                    
                                                     | 
                
                 | 
                            _err(f"See the log file: {log_path.resolve()}") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    191
                 | 
                                    
                                                     | 
                
                 | 
                        time.sleep(0.5)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    192
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    193
                 | 
                                    
                                                     | 
                
                 | 
                    def _dump_error(self, e: BaseException) -> None:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                                                                        
                        
                         
                                                                                        
                                                                                            
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    194
                 | 
                                    
                                                     | 
                
                 | 
                        try:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    195
                 | 
                                    
                                                     | 
                
                 | 
                            dmp_path = FilesysTools.dump_error(e)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    196
                 | 
                                    
                                                     | 
                
                 | 
                            _err(f"Wrote error and system info to: {dmp_path.resolve()}") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    197
                 | 
                                    
                                                     | 
                
                 | 
                        except BaseException:  | 
            
                            
                    | 
                        
                     | 
                     | 
                     | 
                    
                                                                                                    
                        
                         
                                                                                        
                                                                                     
                     | 
                
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    198
                 | 
                                    
                                                     | 
                
                 | 
                            _err("Note: Failed to write an error dump") | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    199
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    200
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    201
                 | 
                                    
                                                     | 
                
                 | 
                if __name__ == "__main__":  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    202
                 | 
                                    
                                                     | 
                
                 | 
                    MandosTyperCli().main()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    203
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                            
            
                                    
            
            
                | 
                    204
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                                                                            
                                                                
            
                                    
            
            
                | 
                    205
                 | 
                                    
                                                     | 
                
                 | 
                __all__ = ["CmdNamespace", "MandosCli"]  | 
            
            
                                                        
            
                                    
            
            
                | 
                    206
                 | 
                                    
                                                     | 
                
                 | 
                 |