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@@ 592-614 (lines=23) @@
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryGeneralFunction(Entry[DrugbankGeneralFunctionSearch]): |
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@classmethod |
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def run( |
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cls, |
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path: Path = CommonArgs.compounds, |
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key: str = EntryArgs.key("inter.drugbank:target-fn"), |
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as_of: Optional[str] = CommonArgs.as_of, |
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to: Optional[Path] = CommonArgs.to_single, |
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check: bool = EntryArgs.check, |
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log: Optional[Path] = CommonArgs.log_path, |
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quiet: bool = CommonArgs.quiet, |
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verbose: bool = CommonArgs.verbose, |
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no_setup: bool = CommonArgs.no_setup, |
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) -> Searcher: |
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""" |
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General functions from DrugBank targets. |
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OBJECT: Name of the general function (e.g. "Toxic substance binding") |
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PREDICATE: against on target (e.g. "binder", "downregulator", or "agonist"). |
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""" |
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built = DrugbankGeneralFunctionSearch(key, Apis.Pubchem, {DrugbankTargetType.target}) |
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryDrugbankTransporter(Entry[DrugbankTargetSearch]): |
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@@ 567-589 (lines=23) @@
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryDrugbankTarget(Entry[DrugbankTargetSearch]): |
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@classmethod |
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def run( |
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cls, |
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path: Path = CommonArgs.compounds, |
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key: str = EntryArgs.key("inter.drugbank:target"), |
| 573 |
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as_of: Optional[str] = CommonArgs.as_of, |
| 574 |
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to: Optional[Path] = CommonArgs.to_single, |
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check: bool = EntryArgs.check, |
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log: Optional[Path] = CommonArgs.log_path, |
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quiet: bool = CommonArgs.quiet, |
| 578 |
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verbose: bool = CommonArgs.verbose, |
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no_setup: bool = CommonArgs.no_setup, |
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) -> Searcher: |
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""" |
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Protein targets from DrugBank. |
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OBJECT: Target name (e.g. "Solute carrier family 22 member 11") from DrugBank |
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PREDICATE: Action (e.g. "binder", "downregulator", or "agonist") |
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""" |
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built = DrugbankTargetSearch(key, Apis.Pubchem, {DrugbankTargetType.target}) |
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryGeneralFunction(Entry[DrugbankGeneralFunctionSearch]): |
dmyersturnbull /
mandos
