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@@ 630-655 (lines=26) @@
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class EntryTransporterGeneralFunction(Entry[DrugbankGeneralFunctionSearch]): |
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@classmethod |
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def run( |
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cls, |
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path: Path = EntryArgs.path, |
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key: str = EntryArgs.key("inter.drugbank:pk-fn"), |
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to: Optional[Path] = EntryArgs.to, |
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check: bool = EntryArgs.test, |
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log: Optional[Path] = EntryArgs.log_path, |
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quiet: bool = EntryArgs.quiet, |
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verbose: bool = EntryArgs.verbose, |
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no_setup: bool = EntryArgs.no_setup, |
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) -> Searcher: |
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""" |
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DrugBank PK-related protein functions. |
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OBJECT: Name of the general function (e.g. "Toxic substance binding") |
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PREDICATE: "transported by", "carried by", or "metabolized by" |
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""" |
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target_types = { |
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DrugbankTargetType.transporter, |
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DrugbankTargetType.carrier, |
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DrugbankTargetType.enzyme, |
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} |
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built = DrugbankGeneralFunctionSearch(key, Apis.Pubchem, target_types) |
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryDrugbankDdi(Entry[DrugbankDdiSearch]): |
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@@ 601-626 (lines=26) @@
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class EntryDrugbankTransporter(Entry[DrugbankTargetSearch]): |
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@classmethod |
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def run( |
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cls, |
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path: Path = EntryArgs.path, |
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key: str = EntryArgs.key("inter.drugbank:pk"), |
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to: Optional[Path] = EntryArgs.to, |
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check: bool = EntryArgs.test, |
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log: Optional[Path] = EntryArgs.log_path, |
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quiet: bool = EntryArgs.quiet, |
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verbose: bool = EntryArgs.verbose, |
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no_setup: bool = EntryArgs.no_setup, |
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) -> Searcher: |
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""" |
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PK-related proteins from DrugBank. |
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OBJECT: Transporter name (e.g. "Solute carrier family 22 member 11") from DrugBank |
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PREDICATE: "transported by", "carried by", or "metabolized by" |
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""" |
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target_types = { |
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DrugbankTargetType.transporter, |
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DrugbankTargetType.carrier, |
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DrugbankTargetType.enzyme, |
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} |
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built = DrugbankTargetSearch(key, Apis.Pubchem, target_types) |
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return cls._run(built, path, to, check, log, quiet, verbose, no_setup) |
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class EntryTransporterGeneralFunction(Entry[DrugbankGeneralFunctionSearch]): |
dmyersturnbull /
mandos
