dmyersturnbull /
mandos
| @@ 48-74 (lines=27) @@ | ||
| 45 | ] |
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| 46 | ||
| 47 | ||
| 48 | class CgiSearch(PubchemSearch[CgiHit]): |
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| 49 | """""" |
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| 50 | ||
| 51 | def __init__(self, key: str, api: PubchemApi): |
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| 52 | super().__init__(key, api) |
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| 53 | ||
| 54 | @property |
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| 55 | def data_source(self) -> str: |
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| 56 | return "The Drug Gene Interaction Database (DGIdb)" |
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| 57 | ||
| 58 | def find(self, inchikey: str) -> Sequence[DgiHit]: |
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| 59 | data = self.api.fetch_data(inchikey) |
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| 60 | return [ |
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| 61 | DgiHit( |
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| 62 | record_id=None, |
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| 63 | origin_inchikey=inchikey, |
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| 64 | matched_inchikey=data.names_and_identifiers.inchikey, |
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| 65 | compound_id=str(data.cid), |
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| 66 | compound_name=data.name, |
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| 67 | predicate=f"interacts with gene (compound)", |
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| 68 | object_id=dd.gene_name, |
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| 69 | object_name=dd.gene_name, |
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| 70 | search_key=self.key, |
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| 71 | search_class=self.search_class, |
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| 72 | data_source=self.data_source, |
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| 73 | ) |
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| 74 | for dd in data.biomolecular_interactions_and_pathways.compound_gene_interactions |
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| 75 | ] |
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| 76 | ||
| 77 | ||
| @@ 18-44 (lines=27) @@ | ||
| 15 | """""" |
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| 16 | ||
| 17 | ||
| 18 | class DgiSearch(PubchemSearch[DgiHit]): |
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| 19 | """""" |
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| 20 | ||
| 21 | def __init__(self, key: str, api: PubchemApi): |
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| 22 | super().__init__(key, api) |
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| 23 | ||
| 24 | @property |
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| 25 | def data_source(self) -> str: |
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| 26 | return "The Drug Gene Interaction Database (DGIdb)" |
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| 27 | ||
| 28 | def find(self, inchikey: str) -> Sequence[DgiHit]: |
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| 29 | data = self.api.fetch_data(inchikey) |
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| 30 | return [ |
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| 31 | DgiHit( |
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| 32 | record_id=None, |
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| 33 | origin_inchikey=inchikey, |
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| 34 | matched_inchikey=data.names_and_identifiers.inchikey, |
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| 35 | compound_id=str(data.cid), |
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| 36 | compound_name=data.name, |
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| 37 | predicate=f"interacts with gene (drug)", |
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| 38 | object_id=dd.gene_claim_id, |
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| 39 | object_name=dd.gene_name, |
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| 40 | search_key=self.key, |
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| 41 | search_class=self.search_class, |
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| 42 | data_source=self.data_source, |
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| 43 | ) |
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| 44 | for dd in data.biomolecular_interactions_and_pathways.drug_gene_interactions |
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| 45 | ] |
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| 46 | ||
| 47 | ||
