tests.model.test_correlation_math

Complexity

Total Complexity

9

Size/Duplication

Total Lines	76
Duplicated Lines	0 %

Importance

Changes

0

9 Methods

Rating	Name	Duplication	Size	Complexity
A	TestAffinityMatrix.test_jaccard()	0	6	1
A	TestAffinityMatrix.test_read()	0	4	1
A	TestAffinityMatrix.test_minkowski_2()	0	6	1
A	TestAffinityMatrix.test_minkowski_1_1()	0	6	1
A	TestAffinityMatrix.test_minkowski_0()	0	6	1
A	TestAffinityMatrix.test_minkowski_inf()	0	8	1
A	TestAffinityMatrix.test_non_self_pairs()	0	4	1
A	TestAffinityMatrix.test_minkowski_1_2()	0	6	1
A	TestAffinityMatrix.test_pairs()	0	7	1

import pytest

Missing module docstring

Unable to import 'pytest'

import numpy as np

Unable to import 'numpy'

from mandos.model.correlation_math import *

The usage of wildcard imports like mandos.model.correlation_math should generally be avoided.

logging was imported with wildcard, but is not used.

pd was imported with wildcard, but is not used.

logger was imported with wildcard, but is not used.

CompoundCompoundPair was imported with wildcard, but is not used.

T was imported with wildcard, but is not used.

Z was imported with wildcard, but is not used.

ConfusionMatrix was imported with wildcard, but is not used.

defaultdict was imported with wildcard, but is not used.

Sequence was imported with wildcard, but is not used.

Mapping was imported with wildcard, but is not used.

Set was imported with wildcard, but is not used.

TypeVar was imported with wildcard, but is not used.

Callable was imported with wildcard, but is not used.

SupportsFloat was imported with wildcard, but is not used.

Optional was imported with wildcard, but is not used.

Type was imported with wildcard, but is not used.

List was imported with wildcard, but is not used.

Tup was imported with wildcard, but is not used.

TypedDfs was imported with wildcard, but is not used.

TypedDf was imported with wildcard, but is not used.

from .. import get_test_resource


class TestAffinityMatrix:

Missing class docstring

    def test_read(self):

Missing function or method docstring

This method could be written as a function/class method.

        df = AffinityMatrix.read_csv(get_test_resource("affinity_mx.csv"))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]

    def test_jaccard(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": {"a", "b", "c"}, "gabapentin": {"a", "b"}}
        df = AffinityMatrix.from_function(items, AffinityFunctions.jaccard())

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[1, 2 / 3], [2 / 3, 1]]

    def test_minkowski_1_1(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": [1, 2], "gabapentin": [1, 2]}
        df = AffinityMatrix.from_function(items, AffinityFunctions.negative_minkowski(1))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[0, 0], [0, 0]]

    def test_minkowski_1_2(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": [1, 2], "gabapentin": [2, 1]}
        df = AffinityMatrix.from_function(items, AffinityFunctions.negative_minkowski(1))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[0, -2], [-2, 0]]

    def test_minkowski_2(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": [1, 3], "gabapentin": [3, 1]}
        df = AffinityMatrix.from_function(items, AffinityFunctions.negative_minkowski(2))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[0, -np.sqrt(8)], [-np.sqrt(8), 0]]

    def test_minkowski_0(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": [1, 2], "gabapentin": [2, 1]}
        df = AffinityMatrix.from_function(items, AffinityFunctions.negative_minkowski(0))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[0, -2], [-2, 0]]

    def test_minkowski_inf(self):

Missing function or method docstring

This method could be written as a function/class method.

        items = {"cocaine": [1, 4], "gabapentin": [2, 1]}
        df = AffinityMatrix.from_function(

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

            items, AffinityFunctions.negative_minkowski(float("infinity"))
        )
        assert df.rows == ["cocaine", "gabapentin"]
        assert df.cols == ["cocaine", "gabapentin"]
        assert df.values.tolist() == [[0, -3], [-3, 0]]

    def test_pairs(self):

Missing function or method docstring

This method could be written as a function/class method.

        df = AffinityMatrix.read_csv(get_test_resource("affinity_mx.csv"))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        dct = df.all_pairs()
        assert dct == {
            ("cocaine", "cocaine"): 0.2,
            ("gabapentin", "gabapentin"): 0.2,
            ("cocaine", "gabapentin"): 0.1,
        }

    def test_non_self_pairs(self):

Missing function or method docstring

This method could be written as a function/class method.

        df = AffinityMatrix.read_csv(get_test_resource("affinity_mx.csv"))

Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

        dct = df.non_self_pairs()
        assert dct == {("cocaine", "gabapentin"): 0.1}


if __name__ == "__main__":
    pytest.main()