tests.search.test_indication_search.TestIndicationSearch.test_find() - Code Metrics - dmyersturnbull/mandos - Measure and Improve Code Quality continuously with Scrutinizer

TestIndicationSearch.test_find() A
last analyzed 2021-01-25 23:07 UTC

↳ Parent: tests.search.test_indication_search

Complexity

Conditions

Size

Total Lines	22
Code Lines	20

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	1
eloc	20
nop	1
dl	0
loc	22
rs	9.4
c	0
b	0
f	0

import pytest


from mandos.cli import Commands, What

from . import get_test_resource


class TestIndicationSearch:

    def test_find(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        df, triples = Commands.search_for(What.trial, get_test_resource("inchis.txt"), None)

        assert len(df) == 6
        assert len(triples) == 6
        assert {t.compound_name.lower() for t in triples} == {"alprazolam"}
        assert {t.object_id for t in triples} == {
            "D012559",
            "D016584",
            "D003704",
            "D001008",
            "D001007",
            "D003866",
        }
        assert {t.object_name.lower() for t in triples} == {
            "schizophrenia",
            "panic disorder",
            "dementia",
            "anxiety",
            "depressive disorder",
            "anxiety disorders",
        }
        assert {t.predicate for t in triples} == {"phase-4 indication", "phase-3 indication"}

    def test_cocaine_hcl(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        df, triples = Commands.search_for(What.trial, ["CHEMBL529437"], None)

        assert len(df) == 1
        assert len(triples) == 1
        assert triples[0].compound_name.lower() == "cocaine"
        assert triples[0].compound_id == "CHEMBL370805"
        assert triples[0].object_id == "D000758"
        assert triples[0].object_name == "Anesthesia"
        assert triples[0].predicate == "phase-4 indication"


if __name__ == "__main__":
    pytest.main()


1			import pytest
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing module docstring Loading history... introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Unable to import 'pytest' Loading history...
2
3			from mandos.cli import Commands, What
4
5			from . import get_test_resource
6
7
8			class TestIndicationSearch:
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
9			def test_find(self):
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
10			df, triples = Commands.search_for(What.trial, get_test_resource("inchis.txt"), None)
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
11			assert len(df) == 6
12			assert len(triples) == 6
13			assert {t.compound_name.lower() for t in triples} == {"alprazolam"}
14			assert {t.object_id for t in triples} == {
15			"D012559",
16			"D016584",
17			"D003704",
18			"D001008",
19			"D001007",
20			"D003866",
21			}
22			assert {t.object_name.lower() for t in triples} == {
23			"schizophrenia",
24			"panic disorder",
25			"dementia",
26			"anxiety",
27			"depressive disorder",
28			"anxiety disorders",
29			}
30			assert {t.predicate for t in triples} == {"phase-4 indication", "phase-3 indication"}
31
32			def test_cocaine_hcl(self):
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
33			df, triples = Commands.search_for(What.trial, ["CHEMBL529437"], None)
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
34			assert len(df) == 1
35			assert len(triples) == 1
36			assert triples[0].compound_name.lower() == "cocaine"
37			assert triples[0].compound_id == "CHEMBL370805"
38			assert triples[0].object_id == "D000758"
39			assert triples[0].object_name == "Anesthesia"
40			assert triples[0].predicate == "phase-4 indication"
41
42
43			if __name__ == "__main__":
44			pytest.main()
45

dmyersturnbull / mandos

TestIndicationSearch.test_find() A last analyzed 2021-01-25 23:07 UTC

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TestIndicationSearch.test_find() A
last analyzed 2021-01-25 23:07 UTC