The method getConfiguration() does not exist on Comodojo\Daemon\Daemon. It seems like you code against a sub-type of Comodojo\Daemon\Daemon such as Comodojo\Extender\ExtenderDaemon.
(
Ignorable by Annotation
)
If this is a false-positive, you can also ignore this issue in your code via the ignore-call annotation
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$daemon->/** @scrutinizer ignore-call */
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getConfiguration(),
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$daemon->getLogger(),
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$daemon->getEvents()
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);
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$data = $manager->getOne(['id' => $id]);
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if ( empty($data) ) throw new RpcException("No record could be found", -31002);
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$resource = new Item($data, new WorklogTransformer);