submissions.views.FixValidation.post() - Code Metrics - Inspection of "Validation batch update" - cnr-ibba/IMAGE-InjectTool - Measure and Improve Code Quality continuously with Scrutinizer

Completed

Pull Request — master (#41)

unknown

created 2019-07-26 10:24 UTC

submissions.views.FixValidation.post() B

↳ Parent: submissions.views

Complexity

Conditions

Size

Total Lines	38
Code Lines	28

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	28
dl	0
loc	38
rs	8.7413
c	0
b	0
f	0
cc	5
nop	3

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Tue Jul 24 15:49:23 2018

@author: Paolo Cozzi <[email protected]>
"""

import logging
import ast
import re
from django.core.exceptions import ObjectDoesNotExist

from django.contrib import messages
from django.contrib.auth.mixins import LoginRequiredMixin
from django.db.models import Q
from django.http import HttpResponseRedirect
from django.views import View
from django.views.generic import (
    CreateView, DetailView, ListView, UpdateView, DeleteView)
from django.shortcuts import get_object_or_404, redirect
from django.urls import reverse_lazy, reverse

from common.constants import (
    WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE,
    TIME_UNITS, VALIDATION_MESSAGES_ATTRIBUTES, SAMPLE_STORAGE,
    SAMPLE_STORAGE_PROCESSING, ACCURACIES, UNITS_VALIDATION_MESSAGES,
    VALUES_VALIDATION_MESSAGES)
from common.helpers import get_deleted_objects, uid2biosample
from common.views import OwnerMixin
from crbanim.tasks import ImportCRBAnimTask
from cryoweb.tasks import import_from_cryoweb

from image_app.models import Submission, Name, Animal, Sample
from excel.tasks import ImportTemplateTask

from validation.helpers import construct_validation_message
from validation.models import ValidationSummary
from animals.tasks import BatchUpdateAnimals
from samples.tasks import BatchUpdateSamples

from .forms import SubmissionForm, ReloadForm
from .helpers import is_target_in_message

# Get an instance of a logger
logger = logging.getLogger(__name__)


class CreateSubmissionView(LoginRequiredMixin, CreateView):
    form_class = SubmissionForm
    model = Submission

    # template name is derived from model position and views type.
    # in this case, ir will be 'image_app/submission_form.html' so
    # i need to clearly specify it
    template_name = "submissions/submission_form.html"

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(CreateSubmissionView, self).form_invalid(form)

    # add user to this object
    def form_valid(self, form):
        self.object = form.save(commit=False)
        self.object.owner = self.request.user

        # I will have a different loading function accordingly with data type
        if self.object.datasource_type == CRYOWEB_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb importing process with task %s" % res.task_id)

        # I will have a different loading function accordingly with data type
        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # create a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim importing process with task %s" % res.task_id)

        else:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # create a task
            my_task = ImportTemplateTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start template importing process with task %s" % res.task_id)

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class MessagesSubmissionMixin(object):
    """Display messages in SubmissionViews"""

    # https://stackoverflow.com/a/45696442
    def get_context_data(self, **kwargs):
        data = super().get_context_data(**kwargs)

        # get the submission message
        message = self.submission.message

        # check if data are loaded or not
        if self.submission.status in [WAITING, SUBMITTED]:
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

        elif self.submission.status in [ERROR, NEED_REVISION]:
            messages.error(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-danger")

        elif message is not None and message != '':
            messages.info(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-info")

        return data


class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_detail.html"

    def get_context_data(self, **kwargs):
        # pass self.object to a new submission attribute in order to call
        # MessagesSubmissionMixin.get_context_data()
        self.submission = self.object

        # Call the base implementation first to get a context
        context = super(DetailSubmissionView, self).get_context_data(**kwargs)

        # add submission report to context
        validation_summary = construct_validation_message(self.submission)

        # HINT: is this computational intensive?
        context["validation_summary"] = validation_summary

        return context


class SubmissionValidationSummaryView(OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_validation_summary.html"

    def get_context_data(self, **kwargs):
        context = super().get_context_data(**kwargs)
        summary_type = self.kwargs['type']
        try:
            validation_summary = self.object.validationsummary_set\
                .get(type=summary_type)
            context['validation_summary'] = validation_summary
            editable = list()
            for message in validation_summary.messages:
                message = ast.literal_eval(message)
                if uid2biosample(message['offending_column']) in \
                        [val for sublist in VALIDATION_MESSAGES_ATTRIBUTES for
                         val in sublist]:
                    editable.append(True)
                else:
                    editable.append(False)
            context['editable'] = editable
        except ObjectDoesNotExist:
            context['validation_summary'] = None
        context['submission'] = Submission.objects.get(pk=self.kwargs['pk'])
        return context


class SubmissionValidationSummaryFixErrorsView(OwnerMixin, ListView):
    template_name = "submissions/submission_validation_summary_fix_errors.html"

    def get_queryset(self):
        self.summary_type = self.kwargs['type']
        self.submission = Submission.objects.get(pk=self.kwargs['pk'])
        self.validation_summary = ValidationSummary.objects.get(
            submission=self.submission, type=self.summary_type)
        self.message = ast.literal_eval(self.validation_summary.messages[
                                            int(self.kwargs['message_counter'])
                                        ])
        self.offending_column = uid2biosample(
            self.message['offending_column'])
        self.show_units = True
        if is_target_in_message(self.message['message'],
                                UNITS_VALIDATION_MESSAGES):
            self.units = [unit.name for unit in TIME_UNITS]
            if self.offending_column == 'animal_age_at_collection':
                self.offending_column += "_units"

        elif is_target_in_message(self.message['message'],
                                  VALUES_VALIDATION_MESSAGES):
            if self.offending_column == 'storage':
                self.units = [unit.name for unit in SAMPLE_STORAGE]
            elif self.offending_column == 'storage_processing':
                self.units = [unit.name for unit in SAMPLE_STORAGE_PROCESSING]
            elif self.offending_column == 'collection_place_accuracy' or \
                    self.offending_column == 'birth_location_accuracy':
                self.units = [unit.name for unit in ACCURACIES]
        else:
            self.show_units = False
            self.units = None
        if self.summary_type == 'animal':
            return Animal.objects.filter(id__in=self.message['ids'])
        elif self.summary_type == 'sample':
            return Sample.objects.filter(id__in=self.message['ids'])

    def get_context_data(self, **kwargs):
        # Call the base implementation first to get a context
        context = super(
            SubmissionValidationSummaryFixErrorsView, self
        ).get_context_data(**kwargs)

        # add submission to context
        context["message"] = self.message
        context["type"] = self.summary_type
        context['attribute_to_edit'] = self.offending_column
        for attributes in VALIDATION_MESSAGES_ATTRIBUTES:
            if self.offending_column in attributes:
                context['attributes_to_show'] = [
                    attr for attr in attributes if attr != self.offending_column
                ]
        context['submission'] = self.submission
        context['error_type'] = 'coordinate_check'
        context['show_units'] = self.show_units
        if self.units:
            context['units'] = self.units
        return context


# a detail view since I need to operate on a submission object
# HINT: rename to a more informative name?
class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView):
    template_name = "submissions/submission_edit.html"
    paginate_by = 10

    def get_queryset(self):
        """Subsetting names relying submission id"""
        self.submission = get_object_or_404(
            Submission,
            pk=self.kwargs['pk'],
            owner=self.request.user)

        # unknown animals should be removed from a submission. They have no
        # data in animal table nor sample
        return Name.objects.select_related(
                "validationresult",
                "animal",
                "sample").filter(
            Q(submission=self.submission) & (
                Q(animal__isnull=False) | Q(sample__isnull=False))
            ).order_by('id')

    def dispatch(self, request, *args, **kwargs):

        handler = super(EditSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "submission") and not self.submission.can_edit():
            message = "Cannot edit submission: current status is: %s" % (
                    self.submission.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.submission.get_absolute_url())

        return handler

    def get_context_data(self, **kwargs):
        # Call the base implementation first to get a context
        context = super(EditSubmissionView, self).get_context_data(**kwargs)

        # add submission to context
        context["submission"] = self.submission

        return context


class ListSubmissionsView(OwnerMixin, ListView):
    model = Submission
    template_name = "submissions/submission_list.html"
    ordering = ['-created_at']
    paginate_by = 10


class ReloadSubmissionView(OwnerMixin, UpdateView):
    form_class = ReloadForm
    model = Submission
    template_name = 'submissions/submission_reload.html'

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(ReloadSubmissionView, self).form_invalid(form)

    def form_valid(self, form):
        self.object = form.save(commit=False)

        # update object and force status
        self.object.message = "waiting for data loading"
        self.object.status = WAITING
        self.object.save()

        # HINT: can I change datasource type?

        # call the proper method
        if self.object.datasource_type == CRYOWEB_TYPE:
            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb reload process with task %s" % res.task_id)

        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # a valid submission start a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim reload process with task %s" % res.task_id)

        else:
            # a valid submission start a task
            my_task = ImportTemplateTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start template reload process with task %s" % res.task_id)

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class DeleteSubmissionView(OwnerMixin, DeleteView):
    model = Submission
    template_name = "submissions/submission_confirm_delete.html"
    success_url = reverse_lazy('image_app:dashboard')

    def dispatch(self, request, *args, **kwargs):

        handler = super(DeleteSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "object") and not self.object.can_edit():
            message = "Cannot delete %s: submission status is: %s" % (
                    self.object, self.object.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.object.get_absolute_url())

        return handler

    # https://stackoverflow.com/a/39533619/4385116
    def get_context_data(self, **kwargs):
        # determining related objects
        # TODO: move this to a custom AJAX call
        context = super().get_context_data(**kwargs)

        deletable_objects, model_count, protected = get_deleted_objects(
            [self.object])

        # get only sample and animals from model_count
        info_deleted = {}

        items = ['animals', 'samples']

        for item in items:
            if item in model_count:
                info_deleted[item] = model_count[item]

        # add info to context
        context['info_deleted'] = dict(info_deleted).items()

        return context

    # https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete
    def delete(self, request, *args, **kwargs):
        """
        Add a message after calling base delete method
        """

        httpresponseredirect = super().delete(request, *args, **kwargs)

        message = "Submission %s was successfully deleted" % self.object.title
        logger.info(message)

        messages.info(
            request=self.request,
            message=message,
            extra_tags="alert alert-dismissible alert-info")

        return httpresponseredirect


class FixValidation(View, OwnerMixin):
    def post(self, request, **kwargs):
        # Fetch all required ids from input names and use it as keys
        keys_to_fix = dict()
        for key_to_fix in request.POST:
            if 'to_edit' in key_to_fix:
                keys_to_fix[
                    int(re.search('to_edit(.*)', key_to_fix).groups()[0])] \

                    = request.POST[key_to_fix]

        pk = self.kwargs['pk']
        record_type = self.kwargs['record_type']
        attribute_to_edit = self.kwargs['attribute_to_edit']

        submission = Submission.objects.get(pk=pk)
        submission.message = "waiting for data updating"
        submission.status = WAITING
        submission.save()

        # Update validation summary
        summary_obj, created = ValidationSummary.objects.get_or_create(
            submission=submission, type=record_type)
        summary_obj.submission = submission
        summary_obj.reset()

        # create a task
        if record_type == 'animal':
            my_task = BatchUpdateAnimals()
        elif record_type == 'sample':
            my_task = BatchUpdateSamples()
        else:
            return HttpResponseRedirect(
                reverse('submissions:detail', args=(pk,)))

        # a valid submission start a task
        res = my_task.delay(pk, keys_to_fix, attribute_to_edit)
        logger.info(
            "Start fix validation process with task %s" % res.task_id)
        return HttpResponseRedirect(reverse('submissions:detail', args=(pk,)))


1		#!/usr/bin/env python3
2		# -- coding: utf-8 --
3		"""
4		Created on Tue Jul 24 15:49:23 2018
5
6		@author: Paolo Cozzi <[email protected]>
7		"""
8
9		import logging
10		import ast
11		import re
12		from django.core.exceptions import ObjectDoesNotExist
13
14		from django.contrib import messages
15		from django.contrib.auth.mixins import LoginRequiredMixin
16		from django.db.models import Q
17		from django.http import HttpResponseRedirect
18		from django.views import View
19		from django.views.generic import (
20		CreateView, DetailView, ListView, UpdateView, DeleteView)
21		from django.shortcuts import get_object_or_404, redirect
22		from django.urls import reverse_lazy, reverse
23
24		from common.constants import (
25		WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE,
26		TIME_UNITS, VALIDATION_MESSAGES_ATTRIBUTES, SAMPLE_STORAGE,
27		SAMPLE_STORAGE_PROCESSING, ACCURACIES, UNITS_VALIDATION_MESSAGES,
28		VALUES_VALIDATION_MESSAGES)
29		from common.helpers import get_deleted_objects, uid2biosample
30		from common.views import OwnerMixin
31		from crbanim.tasks import ImportCRBAnimTask
32		from cryoweb.tasks import import_from_cryoweb
33
34		from image_app.models import Submission, Name, Animal, Sample
35		from excel.tasks import ImportTemplateTask
36
37		from validation.helpers import construct_validation_message
38		from validation.models import ValidationSummary
39		from animals.tasks import BatchUpdateAnimals
40		from samples.tasks import BatchUpdateSamples
41
42		from .forms import SubmissionForm, ReloadForm
43		from .helpers import is_target_in_message
44
45		# Get an instance of a logger
46		logger = logging.getLogger(__name__)
47
48
49		class CreateSubmissionView(LoginRequiredMixin, CreateView):
50		form_class = SubmissionForm
51		model = Submission
52
53		# template name is derived from model position and views type.
54		# in this case, ir will be 'image_app/submission_form.html' so
55		# i need to clearly specify it
56		template_name = "submissions/submission_form.html"
57
58		def form_invalid(self, form):
59		messages.error(
60		self.request,
61		message="Please correct the errors below",
62		extra_tags="alert alert-dismissible alert-danger")
63
64		return super(CreateSubmissionView, self).form_invalid(form)
65
66		# add user to this object
67		def form_valid(self, form):
68		self.object = form.save(commit=False)
69		self.object.owner = self.request.user
70
71		# I will have a different loading function accordingly with data type
72		if self.object.datasource_type == CRYOWEB_TYPE:
73		# update object and force status
74		self.object.message = "waiting for data loading"
75		self.object.status = WAITING
76		self.object.save()
77
78		# a valid submission start a task
79		res = import_from_cryoweb.delay(self.object.pk)
80		logger.info(
81		"Start cryoweb importing process with task %s" % res.task_id)
82
83		# I will have a different loading function accordingly with data type
84		elif self.object.datasource_type == CRB_ANIM_TYPE:
85		# update object and force status
86		self.object.message = "waiting for data loading"
87		self.object.status = WAITING
88		self.object.save()
89
90		# create a task
91		my_task = ImportCRBAnimTask()
92
93		# a valid submission start a task
94		res = my_task.delay(self.object.pk)
95		logger.info(
96		"Start crbanim importing process with task %s" % res.task_id)
97
98		else:
99		# update object and force status
100		self.object.message = "waiting for data loading"
101		self.object.status = WAITING
102		self.object.save()
103
104		# create a task
105		my_task = ImportTemplateTask()
106
107		# a valid submission start a task
108		res = my_task.delay(self.object.pk)
109		logger.info(
110		"Start template importing process with task %s" % res.task_id)
111
112		# a redirect to self.object.get_absolute_url()
113		return HttpResponseRedirect(self.get_success_url())
114
115
116		class MessagesSubmissionMixin(object):
117		"""Display messages in SubmissionViews"""
118
119		# https://stackoverflow.com/a/45696442
120		def get_context_data(self, **kwargs):
121		data = super().get_context_data(**kwargs)
122
123		# get the submission message
124		message = self.submission.message
125
126		# check if data are loaded or not
127		if self.submission.status in [WAITING, SUBMITTED]:
128		messages.warning(
129		request=self.request,
130		message=message,
131		extra_tags="alert alert-dismissible alert-warning")
132
133		elif self.submission.status in [ERROR, NEED_REVISION]:
134		messages.error(
135		request=self.request,
136		message=message,
137		extra_tags="alert alert-dismissible alert-danger")
138
139		elif message is not None and message != '':
140		messages.info(
141		request=self.request,
142		message=message,
143		extra_tags="alert alert-dismissible alert-info")
144
145		return data
146
147
148		class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView):
149		model = Submission
150		template_name = "submissions/submission_detail.html"
151
152		def get_context_data(self, **kwargs):
153		# pass self.object to a new submission attribute in order to call
154		# MessagesSubmissionMixin.get_context_data()
155		self.submission = self.object
156
157		# Call the base implementation first to get a context
158		context = super(DetailSubmissionView, self).get_context_data(**kwargs)
159
160		# add submission report to context
161		validation_summary = construct_validation_message(self.submission)
162
163		# HINT: is this computational intensive?
164		context["validation_summary"] = validation_summary
165
166		return context
167
168
169		class SubmissionValidationSummaryView(OwnerMixin, DetailView):
170		model = Submission
171		template_name = "submissions/submission_validation_summary.html"
172
173		def get_context_data(self, **kwargs):
174		context = super().get_context_data(**kwargs)
175		summary_type = self.kwargs['type']
176		try:
177		validation_summary = self.object.validationsummary_set\
178		.get(type=summary_type)
179		context['validation_summary'] = validation_summary
180		editable = list()
181		for message in validation_summary.messages:
182		message = ast.literal_eval(message)
183		if uid2biosample(message['offending_column']) in \
184		[val for sublist in VALIDATION_MESSAGES_ATTRIBUTES for
185		val in sublist]:
186		editable.append(True)
187		else:
188		editable.append(False)
189		context['editable'] = editable
190		except ObjectDoesNotExist:
191		context['validation_summary'] = None
192		context['submission'] = Submission.objects.get(pk=self.kwargs['pk'])
193		return context
194
195
196		class SubmissionValidationSummaryFixErrorsView(OwnerMixin, ListView):
197		template_name = "submissions/submission_validation_summary_fix_errors.html"
198
199		def get_queryset(self):
200		self.summary_type = self.kwargs['type']
201		self.submission = Submission.objects.get(pk=self.kwargs['pk'])
202		self.validation_summary = ValidationSummary.objects.get(
203		submission=self.submission, type=self.summary_type)
204		self.message = ast.literal_eval(self.validation_summary.messages[
205		int(self.kwargs['message_counter'])
206		])
207		self.offending_column = uid2biosample(
208		self.message['offending_column'])
209		self.show_units = True
210		if is_target_in_message(self.message['message'],
211		UNITS_VALIDATION_MESSAGES):
212		self.units = [unit.name for unit in TIME_UNITS]
213		if self.offending_column == 'animal_age_at_collection':
214		self.offending_column += "_units"
215
216		elif is_target_in_message(self.message['message'],
217		VALUES_VALIDATION_MESSAGES):
218		if self.offending_column == 'storage':
219		self.units = [unit.name for unit in SAMPLE_STORAGE]
220		elif self.offending_column == 'storage_processing':
221		self.units = [unit.name for unit in SAMPLE_STORAGE_PROCESSING]
222		elif self.offending_column == 'collection_place_accuracy' or \
223		self.offending_column == 'birth_location_accuracy':
224		self.units = [unit.name for unit in ACCURACIES]
225		else:
226		self.show_units = False
227		self.units = None
228		if self.summary_type == 'animal':
229		return Animal.objects.filter(id__in=self.message['ids'])
230		elif self.summary_type == 'sample':
231		return Sample.objects.filter(id__in=self.message['ids'])
232
233		def get_context_data(self, **kwargs):
234		# Call the base implementation first to get a context
235		context = super(
236		SubmissionValidationSummaryFixErrorsView, self
237		).get_context_data(**kwargs)
238
239		# add submission to context
240		context["message"] = self.message
241		context["type"] = self.summary_type
242		context['attribute_to_edit'] = self.offending_column
243		for attributes in VALIDATION_MESSAGES_ATTRIBUTES:
244		if self.offending_column in attributes:
245		context['attributes_to_show'] = [
246		attr for attr in attributes if attr != self.offending_column
247		]
248		context['submission'] = self.submission
249		context['error_type'] = 'coordinate_check'
250		context['show_units'] = self.show_units
251		if self.units:
252		context['units'] = self.units
253		return context
254
255
256		# a detail view since I need to operate on a submission object
257		# HINT: rename to a more informative name?
258		class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView):
259		template_name = "submissions/submission_edit.html"
260		paginate_by = 10
261
262		def get_queryset(self):
263		"""Subsetting names relying submission id"""
264		self.submission = get_object_or_404(
265		Submission,
266		pk=self.kwargs['pk'],
267		owner=self.request.user)
268
269		# unknown animals should be removed from a submission. They have no
270		# data in animal table nor sample
271		return Name.objects.select_related(
272		"validationresult",
273		"animal",
274		"sample").filter(
275		Q(submission=self.submission) & (
276		Q(animal__isnull=False) \| Q(sample__isnull=False))
277		).order_by('id')
278
279	View Code Duplication	def dispatch(self, request, args, *kwargs):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
280		handler = super(EditSubmissionView, self).dispatch(
281		request, args, *kwargs)
282
283		# here I've done get_queryset. Check for submission status
284		if hasattr(self, "submission") and not self.submission.can_edit():
285		message = "Cannot edit submission: current status is: %s" % (
286		self.submission.get_status_display())
287
288		logger.warning(message)
289		messages.warning(
290		request=self.request,
291		message=message,
292		extra_tags="alert alert-dismissible alert-warning")
293
294		return redirect(self.submission.get_absolute_url())
295
296		return handler
297
298		def get_context_data(self, **kwargs):
299		# Call the base implementation first to get a context
300		context = super(EditSubmissionView, self).get_context_data(**kwargs)
301
302		# add submission to context
303		context["submission"] = self.submission
304
305		return context
306
307
308		class ListSubmissionsView(OwnerMixin, ListView):
309		model = Submission
310		template_name = "submissions/submission_list.html"
311		ordering = ['-created_at']
312		paginate_by = 10
313
314
315		class ReloadSubmissionView(OwnerMixin, UpdateView):
316		form_class = ReloadForm
317		model = Submission
318		template_name = 'submissions/submission_reload.html'
319
320		def form_invalid(self, form):
321		messages.error(
322		self.request,
323		message="Please correct the errors below",
324		extra_tags="alert alert-dismissible alert-danger")
325
326		return super(ReloadSubmissionView, self).form_invalid(form)
327
328		def form_valid(self, form):
329		self.object = form.save(commit=False)
330
331		# update object and force status
332		self.object.message = "waiting for data loading"
333		self.object.status = WAITING
334		self.object.save()
335
336		# HINT: can I change datasource type?
337
338		# call the proper method
339		if self.object.datasource_type == CRYOWEB_TYPE:
340		# a valid submission start a task
341		res = import_from_cryoweb.delay(self.object.pk)
342		logger.info(
343		"Start cryoweb reload process with task %s" % res.task_id)
344
345		elif self.object.datasource_type == CRB_ANIM_TYPE:
346		# a valid submission start a task
347		my_task = ImportCRBAnimTask()
348
349		# a valid submission start a task
350		res = my_task.delay(self.object.pk)
351		logger.info(
352		"Start crbanim reload process with task %s" % res.task_id)
353
354		else:
355		# a valid submission start a task
356		my_task = ImportTemplateTask()
357
358		# a valid submission start a task
359		res = my_task.delay(self.object.pk)
360		logger.info(
361		"Start template reload process with task %s" % res.task_id)
362
363		# a redirect to self.object.get_absolute_url()
364		return HttpResponseRedirect(self.get_success_url())
365
366
367		class DeleteSubmissionView(OwnerMixin, DeleteView):
368		model = Submission
369		template_name = "submissions/submission_confirm_delete.html"
370		success_url = reverse_lazy('image_app:dashboard')
371
372	View Code Duplication	def dispatch(self, request, args, *kwargs):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
373		handler = super(DeleteSubmissionView, self).dispatch(
374		request, args, *kwargs)
375
376		# here I've done get_queryset. Check for submission status
377		if hasattr(self, "object") and not self.object.can_edit():
378		message = "Cannot delete %s: submission status is: %s" % (
379		self.object, self.object.get_status_display())
380
381		logger.warning(message)
382		messages.warning(
383		request=self.request,
384		message=message,
385		extra_tags="alert alert-dismissible alert-warning")
386
387		return redirect(self.object.get_absolute_url())
388
389		return handler
390
391		# https://stackoverflow.com/a/39533619/4385116
392		def get_context_data(self, **kwargs):
393		# determining related objects
394		# TODO: move this to a custom AJAX call
395		context = super().get_context_data(**kwargs)
396
397		deletable_objects, model_count, protected = get_deleted_objects(
398		[self.object])
399
400		# get only sample and animals from model_count
401		info_deleted = {}
402
403		items = ['animals', 'samples']
404
405		for item in items:
406		if item in model_count:
407		info_deleted[item] = model_count[item]
408
409		# add info to context
410		context['info_deleted'] = dict(info_deleted).items()
411
412		return context
413
414		# https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete
415		def delete(self, request, args, *kwargs):
416		"""
417		Add a message after calling base delete method
418		"""
419
420		httpresponseredirect = super().delete(request, args, *kwargs)
421
422		message = "Submission %s was successfully deleted" % self.object.title
423		logger.info(message)
424
425		messages.info(
426		request=self.request,
427		message=message,
428		extra_tags="alert alert-dismissible alert-info")
429
430		return httpresponseredirect
431
432
433		class FixValidation(View, OwnerMixin):
434		def post(self, request, **kwargs):
435		# Fetch all required ids from input names and use it as keys
436		keys_to_fix = dict()
437		for key_to_fix in request.POST:
438		if 'to_edit' in key_to_fix:
439		keys_to_fix[
440		int(re.search('to_edit(.*)', key_to_fix).groups()[0])] \
		0 ignored issues – show Comprehensibility Best Practice introduced 2019-07-18 08:55 UTC by Report Bug Copy Issue Report The variable `int` does not seem to be defined. Loading history...
441		= request.POST[key_to_fix]
442
443		pk = self.kwargs['pk']
444		record_type = self.kwargs['record_type']
445		attribute_to_edit = self.kwargs['attribute_to_edit']
446
447		submission = Submission.objects.get(pk=pk)
448		submission.message = "waiting for data updating"
449		submission.status = WAITING
450		submission.save()
451
452		# Update validation summary
453		summary_obj, created = ValidationSummary.objects.get_or_create(
454		submission=submission, type=record_type)
455		summary_obj.submission = submission
456		summary_obj.reset()
457
458		# create a task
459		if record_type == 'animal':
460		my_task = BatchUpdateAnimals()
461		elif record_type == 'sample':
462		my_task = BatchUpdateSamples()
463		else:
464		return HttpResponseRedirect(
465		reverse('submissions:detail', args=(pk,)))
466
467		# a valid submission start a task
468		res = my_task.delay(pk, keys_to_fix, attribute_to_edit)
469		logger.info(
470		"Start fix validation process with task %s" % res.task_id)
471		return HttpResponseRedirect(reverse('submissions:detail', args=(pk,)))
472

cnr-ibba / IMAGE-InjectTool

Pull Request — master (#41)

submissions.views.FixValidation.post() B

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