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#!/usr/bin/env python3 |
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# -*- coding: utf-8 -*- |
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""" |
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Created on Fri Jul 5 15:57:10 2019 |
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@author: Paolo Cozzi <[email protected]> |
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""" |
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from common.tests import DataSourceMixinTestCase as CommonDataSourceMixinTest |
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from ..models import ( |
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db_has_data, Animal, Sample, Submission, DictCountry, DictSpecie, DictSex, |
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Person) |
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class DataSourceMixinTestCase(CommonDataSourceMixinTest): |
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# defining attribute classes |
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submission_model = Submission |
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def upload_datasource(self, message): |
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"""test upload data from DatsSource""" |
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super(DataSourceMixinTestCase, self).upload_datasource(message) |
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# assert data into database |
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self.assertTrue(db_has_data()) |
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self.assertTrue(Animal.objects.exists()) |
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self.assertTrue(Sample.objects.exists()) |
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def check_errors(self, my_check, message): |
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"""Common stuff for cehcking error in file loading""" |
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super(DataSourceMixinTestCase, self).check_errors(my_check, message) |
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# assert data into database |
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self.assertFalse(db_has_data()) |
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self.assertFalse(Animal.objects.exists()) |
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self.assertFalse(Sample.objects.exists()) |
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class FileReaderMixinTestCase: |
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"""A class to deal with common text between CRBAnimReader and |
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ExcelTemplateReader""" |
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def test_check_species(self): |
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"""Test check species method""" |
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# get a country |
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country = DictCountry.objects.get(label="United Kingdom") |
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check, not_found = self.reader.check_species(country) |
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self.assertTrue(check) |
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self.assertEqual(len(not_found), 0) |
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# changing species set |
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DictSpecie.objects.filter(label='Capra hircus').delete() |
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check, not_found = self.reader.check_species(country) |
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# the read species are not included in fixtures |
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self.assertFalse(check) |
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self.assertGreater(len(not_found), 0) |
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def test_check_sex(self): |
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"""Test check sex method""" |
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check, not_found = self.reader.check_sex() |
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self.assertTrue(check) |
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self.assertEqual(len(not_found), 0) |
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# changing sex set |
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DictSex.objects.filter(label='female').delete() |
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check, not_found = self.reader.check_sex() |
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# the read species are not included in fixtures |
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self.assertFalse(check) |
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self.assertGreater(len(not_found), 0) |
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def test_check_countries(self): |
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"Testing country method""" |
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# assert countries are present |
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check, not_found = self.reader.check_countries() |
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self.assertTrue(check) |
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self.assertEqual(len(not_found), 0) |
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# remove a country from UID |
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DictCountry.objects.filter(label="Italy").delete() |
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check, not_found = self.reader.check_countries() |
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self.assertFalse(check) |
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self.assertGreater(len(not_found), 0) |
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# a mixin to correctly instantiate a person object in order to get |
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# a biosample json for test data |
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class PersonMixinTestCase(object): |
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@classmethod |
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def setUpClass(cls): |
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# calling my base class setup |
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super().setUpClass() |
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# now fix person table |
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person = Person.objects.get(user__username="test") |
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person.affiliation_id = 1 |
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person.role_id = 1 |
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person.initials = "T" |
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person.save() |
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cnr-ibba /
IMAGE-InjectTool
