submissions.views.SubmissionValidationSummaryView.get_context_data() - Code Metrics - Inspection of "Validation summary" - cnr-ibba/IMAGE-InjectTool - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Pull Request — master (#30)

by Paolo

created 2019-06-12 16:31 UTC

SubmissionValidationSummaryView.get_context_data() A

↳ Parent: submissions.views

Complexity

Conditions

Size

Total Lines	14
Code Lines	14

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	14
dl	0
loc	14
rs	9.7
c	0
b	0
f	0
cc	4
nop	2

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Tue Jul 24 15:49:23 2018

@author: Paolo Cozzi <[email protected]>
"""

import logging
from django.core.exceptions import ObjectDoesNotExist

from django.contrib import messages
from django.contrib.auth.mixins import LoginRequiredMixin
from django.db.models import Q
from django.http import HttpResponseRedirect
from django.views.generic import (
    CreateView, DetailView, ListView, UpdateView, DeleteView)
from django.shortcuts import get_object_or_404, redirect
from django.urls import reverse_lazy

from common.constants import (
    WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE)
from common.helpers import get_deleted_objects
from common.views import OwnerMixin
from cryoweb.tasks import import_from_cryoweb
from image_app.models import Submission, Name, ValidationSummary
from crbanim.tasks import ImportCRBAnimTask
from validation.helpers import ValidationSummary as VS

from .forms import SubmissionForm, ReloadForm

# Get an instance of a logger
logger = logging.getLogger(__name__)


class CreateSubmissionView(LoginRequiredMixin, CreateView):
    form_class = SubmissionForm
    model = Submission

    # template name is derived from model position and views type.
    # in this case, ir will be 'image_app/submission_form.html' so
    # i need to clearly specify it
    template_name = "submissions/submission_form.html"

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(CreateSubmissionView, self).form_invalid(form)

    # add user to this object
    def form_valid(self, form):
        self.object = form.save(commit=False)
        self.object.owner = self.request.user

        # I will have a different loading function accordingly with data type
        if self.object.datasource_type == CRYOWEB_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb importing process with task %s" % res.task_id)

        # I will have a different loading function accordingly with data type
        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # create a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim importing process with task %s" % res.task_id)

        else:
            message = "{datasource} import is not implemented".format(
                datasource=self.object.get_datasource_type_display())

            self.object.message = message
            self.object.status = ERROR
            self.object.save()

            logger.error(message)

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class MessagesSubmissionMixin(object):
    """Display messages in SubmissionViews"""

    # https://stackoverflow.com/a/45696442
    def get_context_data(self, **kwargs):
        data = super().get_context_data(**kwargs)

        # get the submission message
        message = self.submission.message

        # check if data are loaded or not
        if self.submission.status in [WAITING, SUBMITTED]:
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

        elif self.submission.status in [ERROR, NEED_REVISION]:
            messages.error(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-danger")

        elif message is not None and message != '':
            messages.info(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-info")

        return data


class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_detail.html"

    def get_context_data(self, **kwargs):
        # pass self.object to a new submission attribute in order to call
        # MessagesSubmissionMixin.get_context_data()
        self.submission = self.object

        # Call the base implementation first to get a context
        context = super(DetailSubmissionView, self).get_context_data(**kwargs)

        # add submission report to context
        validation_summary = VS(self.submission)

        # HINT: is this computational intensive?
        context["validation_summary"] = validation_summary

        return context


class SubmissionValidationSummaryView(OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_validation_summary.html"

    def get_context_data(self, **kwargs):
        context = super(SubmissionValidationSummaryView, self).get_context_data(
            **kwargs)
        summary_type = ''
        if self.kwargs['type'] == 'animals':
            summary_type = 'animal'
        elif self.kwargs['type'] == 'samples':
            summary_type = 'sample'
        try:
            context['validation_summary'] = self.object.validationsummary_set\
                .get(type=summary_type)
        except ObjectDoesNotExist:
            context['validation_summary'] = None
        return context


# a detail view since I need to operate on a submission object
# HINT: rename to a more informative name?
class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView):
    template_name = "submissions/submission_edit.html"
    paginate_by = 10

    def get_queryset(self):
        """Subsetting names relying submission id"""
        self.submission = get_object_or_404(
            Submission,
            pk=self.kwargs['pk'],
            owner=self.request.user)

        # unknown animals should be removed from a submission. They have no
        # data in animal table nor sample
        return Name.objects.select_related(
                "validationresult",
                "animal",
                "sample").filter(
            Q(submission=self.submission) & (
                Q(animal__isnull=False) | Q(sample__isnull=False))
            ).order_by('id')

    def dispatch(self, request, *args, **kwargs):

        handler = super(EditSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "submission") and not self.submission.can_edit():
            message = "Cannot edit submission: current status is: %s" % (
                    self.submission.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.submission.get_absolute_url())

        return handler

    def get_context_data(self, **kwargs):
        # Call the base implementation first to get a context
        context = super(EditSubmissionView, self).get_context_data(**kwargs)

        # add submission to context
        context["submission"] = self.submission

        return context


class ListSubmissionsView(OwnerMixin, ListView):
    model = Submission
    template_name = "submissions/submission_list.html"
    ordering = ['-created_at']
    paginate_by = 10


class ReloadSubmissionView(OwnerMixin, UpdateView):
    form_class = ReloadForm
    model = Submission
    template_name = 'submissions/submission_reload.html'

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(ReloadSubmissionView, self).form_invalid(form)

    def form_valid(self, form):
        self.object = form.save(commit=False)

        # update object and force status
        self.object.message = "waiting for data loading"
        self.object.status = WAITING
        self.object.save()

        # HINT: can I change datasource type?

        # call the proper method
        if self.object.datasource_type == CRYOWEB_TYPE:
            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb reload process with task %s" % res.task_id)

        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # a valid submission start a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim reload process with task %s" % res.task_id)

        else:
            # this is not an invalid form. Template is not implemented
            # it is a error in our application
            # TODO: call the proper method
            message = "{datasource} reload is not implemented".format(
                datasource=self.object.get_datasource_type_display())

            messages.error(
                self.request,
                message,
                extra_tags="alert alert-dismissible alert-danger")

            # set an error message to this submission
            self.object.message = message
            self.object.status = ERROR
            self.object.save()

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class DeleteSubmissionView(OwnerMixin, DeleteView):
    model = Submission
    template_name = "submissions/submission_confirm_delete.html"
    success_url = reverse_lazy('image_app:dashboard')

    def dispatch(self, request, *args, **kwargs):

        handler = super(DeleteSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "object") and not self.object.can_edit():
            message = "Cannot delete %s: submission status is: %s" % (
                    self.object, self.object.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.object.get_absolute_url())

        return handler

    # https://stackoverflow.com/a/39533619/4385116
    def get_context_data(self, **kwargs):
        # determining related objects
        # TODO: move this to a custom AJAX call
        context = super().get_context_data(**kwargs)

        deletable_objects, model_count, protected = get_deleted_objects(
            [self.object])

        # get only sample and animals from model_count
        info_deleted = {}

        items = ['animals', 'samples']

        for item in items:
            if item in model_count:
                info_deleted[item] = model_count[item]

        # add info to context
        context['info_deleted'] = dict(info_deleted).items()

        return context

    # https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete
    def delete(self, request, *args, **kwargs):
        """
        Add a message after calling base delete method
        """

        httpresponseredirect = super().delete(request, *args, **kwargs)

        message = "Submission %s was successfully deleted" % self.object.title
        logger.info(message)

        messages.info(
            request=self.request,
            message=message,
            extra_tags="alert alert-dismissible alert-info")

        return httpresponseredirect


1		#!/usr/bin/env python3
2		# -- coding: utf-8 --
3		"""
4		Created on Tue Jul 24 15:49:23 2018
5
6		@author: Paolo Cozzi <[email protected]>
7		"""
8
9		import logging
10		from django.core.exceptions import ObjectDoesNotExist
11
12		from django.contrib import messages
13		from django.contrib.auth.mixins import LoginRequiredMixin
14		from django.db.models import Q
15		from django.http import HttpResponseRedirect
16		from django.views.generic import (
17		CreateView, DetailView, ListView, UpdateView, DeleteView)
18		from django.shortcuts import get_object_or_404, redirect
19		from django.urls import reverse_lazy
20
21		from common.constants import (
22		WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE)
23		from common.helpers import get_deleted_objects
24		from common.views import OwnerMixin
25		from cryoweb.tasks import import_from_cryoweb
26		from image_app.models import Submission, Name, ValidationSummary
27		from crbanim.tasks import ImportCRBAnimTask
28		from validation.helpers import ValidationSummary as VS
29
30		from .forms import SubmissionForm, ReloadForm
31
32		# Get an instance of a logger
33		logger = logging.getLogger(__name__)
34
35
36		class CreateSubmissionView(LoginRequiredMixin, CreateView):
37		form_class = SubmissionForm
38		model = Submission
39
40		# template name is derived from model position and views type.
41		# in this case, ir will be 'image_app/submission_form.html' so
42		# i need to clearly specify it
43		template_name = "submissions/submission_form.html"
44
45		def form_invalid(self, form):
46		messages.error(
47		self.request,
48		message="Please correct the errors below",
49		extra_tags="alert alert-dismissible alert-danger")
50
51		return super(CreateSubmissionView, self).form_invalid(form)
52
53		# add user to this object
54		def form_valid(self, form):
55		self.object = form.save(commit=False)
56		self.object.owner = self.request.user
57
58		# I will have a different loading function accordingly with data type
59		if self.object.datasource_type == CRYOWEB_TYPE:
60		# update object and force status
61		self.object.message = "waiting for data loading"
62		self.object.status = WAITING
63		self.object.save()
64
65		# a valid submission start a task
66		res = import_from_cryoweb.delay(self.object.pk)
67		logger.info(
68		"Start cryoweb importing process with task %s" % res.task_id)
69
70		# I will have a different loading function accordingly with data type
71		elif self.object.datasource_type == CRB_ANIM_TYPE:
72		# update object and force status
73		self.object.message = "waiting for data loading"
74		self.object.status = WAITING
75		self.object.save()
76
77		# create a task
78		my_task = ImportCRBAnimTask()
79
80		# a valid submission start a task
81		res = my_task.delay(self.object.pk)
82		logger.info(
83		"Start crbanim importing process with task %s" % res.task_id)
84
85		else:
86		message = "{datasource} import is not implemented".format(
87		datasource=self.object.get_datasource_type_display())
88
89		self.object.message = message
90		self.object.status = ERROR
91		self.object.save()
92
93		logger.error(message)
94
95		# a redirect to self.object.get_absolute_url()
96		return HttpResponseRedirect(self.get_success_url())
97
98
99		class MessagesSubmissionMixin(object):
100		"""Display messages in SubmissionViews"""
101
102		# https://stackoverflow.com/a/45696442
103		def get_context_data(self, **kwargs):
104		data = super().get_context_data(**kwargs)
105
106		# get the submission message
107		message = self.submission.message
108
109		# check if data are loaded or not
110		if self.submission.status in [WAITING, SUBMITTED]:
111		messages.warning(
112		request=self.request,
113		message=message,
114		extra_tags="alert alert-dismissible alert-warning")
115
116		elif self.submission.status in [ERROR, NEED_REVISION]:
117		messages.error(
118		request=self.request,
119		message=message,
120		extra_tags="alert alert-dismissible alert-danger")
121
122		elif message is not None and message != '':
123		messages.info(
124		request=self.request,
125		message=message,
126		extra_tags="alert alert-dismissible alert-info")
127
128		return data
129
130
131		class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView):
132		model = Submission
133		template_name = "submissions/submission_detail.html"
134
135		def get_context_data(self, **kwargs):
136		# pass self.object to a new submission attribute in order to call
137		# MessagesSubmissionMixin.get_context_data()
138		self.submission = self.object
139
140		# Call the base implementation first to get a context
141		context = super(DetailSubmissionView, self).get_context_data(**kwargs)
142
143		# add submission report to context
144		validation_summary = VS(self.submission)
145
146		# HINT: is this computational intensive?
147		context["validation_summary"] = validation_summary
148
149		return context
150
151
152		class SubmissionValidationSummaryView(OwnerMixin, DetailView):
153		model = Submission
154		template_name = "submissions/submission_validation_summary.html"
155
156		def get_context_data(self, **kwargs):
157		context = super(SubmissionValidationSummaryView, self).get_context_data(
158		**kwargs)
159		summary_type = ''
160		if self.kwargs['type'] == 'animals':
161		summary_type = 'animal'
162		elif self.kwargs['type'] == 'samples':
163		summary_type = 'sample'
164		try:
165		context['validation_summary'] = self.object.validationsummary_set\
166		.get(type=summary_type)
167		except ObjectDoesNotExist:
168		context['validation_summary'] = None
169		return context
170
171
172		# a detail view since I need to operate on a submission object
173		# HINT: rename to a more informative name?
174		class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView):
175		template_name = "submissions/submission_edit.html"
176		paginate_by = 10
177
178		def get_queryset(self):
179		"""Subsetting names relying submission id"""
180		self.submission = get_object_or_404(
181		Submission,
182		pk=self.kwargs['pk'],
183		owner=self.request.user)
184
185		# unknown animals should be removed from a submission. They have no
186		# data in animal table nor sample
187		return Name.objects.select_related(
188		"validationresult",
189		"animal",
190		"sample").filter(
191		Q(submission=self.submission) & (
192		Q(animal__isnull=False) \| Q(sample__isnull=False))
193		).order_by('id')
194
195	View Code Duplication	def dispatch(self, request, args, *kwargs):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
196		handler = super(EditSubmissionView, self).dispatch(
197		request, args, *kwargs)
198
199		# here I've done get_queryset. Check for submission status
200		if hasattr(self, "submission") and not self.submission.can_edit():
201		message = "Cannot edit submission: current status is: %s" % (
202		self.submission.get_status_display())
203
204		logger.warning(message)
205		messages.warning(
206		request=self.request,
207		message=message,
208		extra_tags="alert alert-dismissible alert-warning")
209
210		return redirect(self.submission.get_absolute_url())
211
212		return handler
213
214		def get_context_data(self, **kwargs):
215		# Call the base implementation first to get a context
216		context = super(EditSubmissionView, self).get_context_data(**kwargs)
217
218		# add submission to context
219		context["submission"] = self.submission
220
221		return context
222
223
224		class ListSubmissionsView(OwnerMixin, ListView):
225		model = Submission
226		template_name = "submissions/submission_list.html"
227		ordering = ['-created_at']
228		paginate_by = 10
229
230
231		class ReloadSubmissionView(OwnerMixin, UpdateView):
232		form_class = ReloadForm
233		model = Submission
234		template_name = 'submissions/submission_reload.html'
235
236		def form_invalid(self, form):
237		messages.error(
238		self.request,
239		message="Please correct the errors below",
240		extra_tags="alert alert-dismissible alert-danger")
241
242		return super(ReloadSubmissionView, self).form_invalid(form)
243
244		def form_valid(self, form):
245		self.object = form.save(commit=False)
246
247		# update object and force status
248		self.object.message = "waiting for data loading"
249		self.object.status = WAITING
250		self.object.save()
251
252		# HINT: can I change datasource type?
253
254		# call the proper method
255		if self.object.datasource_type == CRYOWEB_TYPE:
256		# a valid submission start a task
257		res = import_from_cryoweb.delay(self.object.pk)
258		logger.info(
259		"Start cryoweb reload process with task %s" % res.task_id)
260
261		elif self.object.datasource_type == CRB_ANIM_TYPE:
262		# a valid submission start a task
263		my_task = ImportCRBAnimTask()
264
265		# a valid submission start a task
266		res = my_task.delay(self.object.pk)
267		logger.info(
268		"Start crbanim reload process with task %s" % res.task_id)
269
270		else:
271		# this is not an invalid form. Template is not implemented
272		# it is a error in our application
273		# TODO: call the proper method
274		message = "{datasource} reload is not implemented".format(
275		datasource=self.object.get_datasource_type_display())
276
277		messages.error(
278		self.request,
279		message,
280		extra_tags="alert alert-dismissible alert-danger")
281
282		# set an error message to this submission
283		self.object.message = message
284		self.object.status = ERROR
285		self.object.save()
286
287		# a redirect to self.object.get_absolute_url()
288		return HttpResponseRedirect(self.get_success_url())
289
290
291		class DeleteSubmissionView(OwnerMixin, DeleteView):
292		model = Submission
293		template_name = "submissions/submission_confirm_delete.html"
294		success_url = reverse_lazy('image_app:dashboard')
295
296	View Code Duplication	def dispatch(self, request, args, *kwargs):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
297		handler = super(DeleteSubmissionView, self).dispatch(
298		request, args, *kwargs)
299
300		# here I've done get_queryset. Check for submission status
301		if hasattr(self, "object") and not self.object.can_edit():
302		message = "Cannot delete %s: submission status is: %s" % (
303		self.object, self.object.get_status_display())
304
305		logger.warning(message)
306		messages.warning(
307		request=self.request,
308		message=message,
309		extra_tags="alert alert-dismissible alert-warning")
310
311		return redirect(self.object.get_absolute_url())
312
313		return handler
314
315		# https://stackoverflow.com/a/39533619/4385116
316		def get_context_data(self, **kwargs):
317		# determining related objects
318		# TODO: move this to a custom AJAX call
319		context = super().get_context_data(**kwargs)
320
321		deletable_objects, model_count, protected = get_deleted_objects(
322		[self.object])
323
324		# get only sample and animals from model_count
325		info_deleted = {}
326
327		items = ['animals', 'samples']
328
329		for item in items:
330		if item in model_count:
331		info_deleted[item] = model_count[item]
332
333		# add info to context
334		context['info_deleted'] = dict(info_deleted).items()
335
336		return context
337
338		# https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete
339		def delete(self, request, args, *kwargs):
340		"""
341		Add a message after calling base delete method
342		"""
343
344		httpresponseredirect = super().delete(request, args, *kwargs)
345
346		message = "Submission %s was successfully deleted" % self.object.title
347		logger.info(message)
348
349		messages.info(
350		request=self.request,
351		message=message,
352		extra_tags="alert alert-dismissible alert-info")
353
354		return httpresponseredirect
355

cnr-ibba / IMAGE-InjectTool

Pull Request — master (#30)

SubmissionValidationSummaryView.get_context_data() A

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