|
1
|
|
|
#!/usr/bin/env python3 |
|
2
|
|
|
# -*- coding: utf-8 -*- |
|
3
|
|
|
""" |
|
4
|
|
|
Created on Wed Mar 27 12:50:16 2019 |
|
5
|
|
|
|
|
6
|
|
|
@author: Paolo Cozzi <[email protected]> |
|
7
|
|
|
""" |
|
8
|
|
|
|
|
9
|
|
|
import logging |
|
10
|
|
|
import websockets |
|
11
|
|
|
import time |
|
12
|
|
|
import json |
|
13
|
|
|
|
|
14
|
|
|
from dateutil.relativedelta import relativedelta |
|
15
|
|
|
|
|
16
|
|
|
from django.contrib.admin.utils import NestedObjects |
|
17
|
|
|
from django.db import DEFAULT_DB_ALIAS |
|
18
|
|
|
from django.utils.text import capfirst |
|
19
|
|
|
from django.utils.encoding import force_text |
|
20
|
|
|
from validation.helpers import ValidationSummary |
|
21
|
|
|
|
|
22
|
|
|
from .constants import YEARS, MONTHS, DAYS |
|
23
|
|
|
|
|
24
|
|
|
# Get an instance of a logger |
|
25
|
|
|
logger = logging.getLogger(__name__) |
|
26
|
|
|
|
|
27
|
|
|
|
|
28
|
|
|
def image_timedelta(t1, t2): |
|
29
|
|
|
"""A function to deal with image time intervals. Returns a number and |
|
30
|
|
|
time unit""" |
|
31
|
|
|
|
|
32
|
|
|
if t1 is None or t2 is None: |
|
33
|
|
|
logger.warning("One date is NULL ({0}, {1}) ignoring".format(t2, t1)) |
|
34
|
|
|
return None, YEARS |
|
35
|
|
|
|
|
36
|
|
|
if t2 > t1: |
|
37
|
|
|
logger.warning("t2>t1 ({0}, {1}) ignoring".format(t2, t1)) |
|
38
|
|
|
return None, YEARS |
|
39
|
|
|
|
|
40
|
|
|
# check for meaningful intervald |
|
41
|
|
|
if t1.year == 1900 or t2.year == 1900: |
|
42
|
|
|
logger.warning("Ignoring one date ({0}, {1})".format(t2, t1)) |
|
43
|
|
|
return None, YEARS |
|
44
|
|
|
|
|
45
|
|
|
rdelta = relativedelta(t1, t2) |
|
46
|
|
|
|
|
47
|
|
|
if rdelta.years != 0: |
|
48
|
|
|
return rdelta.years, YEARS |
|
49
|
|
|
|
|
50
|
|
|
elif rdelta.months != 0: |
|
51
|
|
|
return rdelta.months, MONTHS |
|
52
|
|
|
|
|
53
|
|
|
else: |
|
54
|
|
|
return rdelta.days, DAYS |
|
55
|
|
|
|
|
56
|
|
|
|
|
57
|
|
|
# https://stackoverflow.com/a/39533619/4385116 |
|
58
|
|
|
# inspired django.contrib.admin.utils.get_deleted_objects, this function |
|
59
|
|
|
# tries to determine all related objects starting from a provied one |
|
60
|
|
|
# HINT: similar function at https://gist.github.com/nealtodd/4594575 |
|
61
|
|
|
def get_deleted_objects(objs, db_alias=DEFAULT_DB_ALIAS): |
|
62
|
|
|
# NestedObjects is an imporovement of django.db.models.deletion.Collector |
|
63
|
|
|
collector = NestedObjects(using=db_alias) |
|
64
|
|
|
collector.collect(objs) |
|
65
|
|
|
|
|
66
|
|
|
def format_callback(obj): |
|
67
|
|
|
opts = obj._meta |
|
68
|
|
|
no_edit_link = '%s: %s' % (capfirst(opts.verbose_name), |
|
69
|
|
|
force_text(obj)) |
|
70
|
|
|
return no_edit_link |
|
71
|
|
|
|
|
72
|
|
|
to_delete = collector.nested(format_callback) |
|
73
|
|
|
protected = [format_callback(obj) for obj in collector.protected] |
|
74
|
|
|
model_count = { |
|
75
|
|
|
model._meta.verbose_name_plural: |
|
76
|
|
|
len(objs) for model, objs in collector.model_objs.items()} |
|
77
|
|
|
|
|
78
|
|
|
return to_delete, model_count, protected |
|
79
|
|
|
|
|
80
|
|
|
|
|
81
|
|
|
def construct_validation_message(submission): |
|
82
|
|
|
""" |
|
83
|
|
|
Function will return dict with all the data required to construct |
|
84
|
|
|
validation message |
|
85
|
|
|
|
|
86
|
|
|
Args: |
|
87
|
|
|
submission : submission to get data from |
|
88
|
|
|
|
|
89
|
|
|
Returns: |
|
90
|
|
|
dict: dictionary with all required data for validation message |
|
91
|
|
|
""" |
|
92
|
|
|
validation_summary = ValidationSummary(submission) |
|
93
|
|
|
validation_message = dict() |
|
94
|
|
|
|
|
95
|
|
|
# Number of animal and samples |
|
96
|
|
|
validation_message['animals'] = validation_summary.n_animals |
|
97
|
|
|
validation_message['samples'] = validation_summary.n_samples |
|
98
|
|
|
|
|
99
|
|
|
# Number of unknow validations |
|
100
|
|
|
validation_message['animal_unkn'] = validation_summary.n_animal_unknown |
|
101
|
|
|
validation_message['sample_unkn'] = validation_summary.n_sample_unknown |
|
102
|
|
|
|
|
103
|
|
|
# Number of problem validations |
|
104
|
|
|
validation_message['animal_issues'] = validation_summary.n_animal_issues |
|
105
|
|
|
validation_message['sample_issues'] = validation_summary.n_sample_issues |
|
106
|
|
|
|
|
107
|
|
|
return validation_message |
|
108
|
|
|
|
|
109
|
|
|
|
|
110
|
|
|
async def send_message_to_websocket(message, pk): |
|
111
|
|
|
""" |
|
112
|
|
|
Function will create websocket object and send message to django-channels |
|
113
|
|
|
Args: |
|
114
|
|
|
message (dict): message to send to websocket |
|
115
|
|
|
pk (str): primary key of submission |
|
116
|
|
|
""" |
|
117
|
|
|
# Need to have it here as in case with small test data message sent to |
|
118
|
|
|
# websocket will overcome response from server |
|
119
|
|
|
time.sleep(3) |
|
120
|
|
|
async with websockets.connect( |
|
121
|
|
|
'ws://asgi:8001/image/ws/submissions/{}/'.format(pk)) as websocket: |
|
122
|
|
|
await websocket.send(json.dumps(message)) |
|
123
|
|
|
|