1
|
|
|
#!/usr/bin/env python3 |
2
|
|
|
# -*- coding: utf-8 -*- |
3
|
|
|
""" |
4
|
|
|
Created on Wed Mar 27 12:50:16 2019 |
5
|
|
|
|
6
|
|
|
@author: Paolo Cozzi <[email protected]> |
7
|
|
|
""" |
8
|
|
|
|
9
|
|
|
import logging |
10
|
|
|
import websockets |
11
|
|
|
import time |
12
|
|
|
import json |
13
|
|
|
|
14
|
|
|
from dateutil.relativedelta import relativedelta |
15
|
|
|
|
16
|
|
|
from django.contrib.admin.utils import NestedObjects |
17
|
|
|
from django.db import DEFAULT_DB_ALIAS |
18
|
|
|
from django.utils.text import capfirst |
19
|
|
|
from django.utils.encoding import force_text |
20
|
|
|
from validation.helpers import ValidationSummary |
21
|
|
|
|
22
|
|
|
from .constants import YEARS, MONTHS, DAYS |
23
|
|
|
|
24
|
|
|
# Get an instance of a logger |
25
|
|
|
logger = logging.getLogger(__name__) |
26
|
|
|
|
27
|
|
|
|
28
|
|
|
def image_timedelta(t1, t2): |
29
|
|
|
"""A function to deal with image time intervals. Returns a number and |
30
|
|
|
time unit""" |
31
|
|
|
|
32
|
|
|
if t1 is None or t2 is None: |
33
|
|
|
logger.warning("One date is NULL ({0}, {1}) ignoring".format(t2, t1)) |
34
|
|
|
return None, YEARS |
35
|
|
|
|
36
|
|
|
if t2 > t1: |
37
|
|
|
logger.warning("t2>t1 ({0}, {1}) ignoring".format(t2, t1)) |
38
|
|
|
return None, YEARS |
39
|
|
|
|
40
|
|
|
# check for meaningful intervald |
41
|
|
|
if t1.year == 1900 or t2.year == 1900: |
42
|
|
|
logger.warning("Ignoring one date ({0}, {1})".format(t2, t1)) |
43
|
|
|
return None, YEARS |
44
|
|
|
|
45
|
|
|
rdelta = relativedelta(t1, t2) |
46
|
|
|
|
47
|
|
|
if rdelta.years != 0: |
48
|
|
|
return rdelta.years, YEARS |
49
|
|
|
|
50
|
|
|
elif rdelta.months != 0: |
51
|
|
|
return rdelta.months, MONTHS |
52
|
|
|
|
53
|
|
|
else: |
54
|
|
|
return rdelta.days, DAYS |
55
|
|
|
|
56
|
|
|
|
57
|
|
|
# https://stackoverflow.com/a/39533619/4385116 |
58
|
|
|
# inspired django.contrib.admin.utils.get_deleted_objects, this function |
59
|
|
|
# tries to determine all related objects starting from a provied one |
60
|
|
|
# HINT: similar function at https://gist.github.com/nealtodd/4594575 |
61
|
|
|
def get_deleted_objects(objs, db_alias=DEFAULT_DB_ALIAS): |
62
|
|
|
# NestedObjects is an imporovement of django.db.models.deletion.Collector |
63
|
|
|
collector = NestedObjects(using=db_alias) |
64
|
|
|
collector.collect(objs) |
65
|
|
|
|
66
|
|
|
def format_callback(obj): |
67
|
|
|
opts = obj._meta |
68
|
|
|
no_edit_link = '%s: %s' % (capfirst(opts.verbose_name), |
69
|
|
|
force_text(obj)) |
70
|
|
|
return no_edit_link |
71
|
|
|
|
72
|
|
|
to_delete = collector.nested(format_callback) |
73
|
|
|
protected = [format_callback(obj) for obj in collector.protected] |
74
|
|
|
model_count = { |
75
|
|
|
model._meta.verbose_name_plural: |
76
|
|
|
len(objs) for model, objs in collector.model_objs.items()} |
77
|
|
|
|
78
|
|
|
return to_delete, model_count, protected |
79
|
|
|
|
80
|
|
|
|
81
|
|
|
def construct_validation_message(submission): |
82
|
|
|
""" |
83
|
|
|
Function will return dict with all the data required to construct |
84
|
|
|
validation message |
85
|
|
|
|
86
|
|
|
Args: |
87
|
|
|
submission : submission to get data from |
88
|
|
|
|
89
|
|
|
Returns: |
90
|
|
|
dict: dictionary with all required data for validation message |
91
|
|
|
""" |
92
|
|
|
validation_summary = ValidationSummary(submission) |
93
|
|
|
validation_message = dict() |
94
|
|
|
|
95
|
|
|
# Number of animal and samples |
96
|
|
|
validation_message['animals'] = validation_summary.n_animals |
97
|
|
|
validation_message['samples'] = validation_summary.n_samples |
98
|
|
|
|
99
|
|
|
# Number of unknow validations |
100
|
|
|
validation_message['animal_unkn'] = validation_summary.n_animal_unknown |
101
|
|
|
validation_message['sample_unkn'] = validation_summary.n_sample_unknown |
102
|
|
|
|
103
|
|
|
# Number of problem validations |
104
|
|
|
validation_message['animal_issues'] = validation_summary.n_animal_issues |
105
|
|
|
validation_message['sample_issues'] = validation_summary.n_sample_issues |
106
|
|
|
|
107
|
|
|
return validation_message |
108
|
|
|
|
109
|
|
|
|
110
|
|
|
async def send_message_to_websocket(message, pk): |
111
|
|
|
""" |
112
|
|
|
Function will create websocket object and send message to django-channels |
113
|
|
|
Args: |
114
|
|
|
message (dict): message to send to websocket |
115
|
|
|
pk (str): primary key of submission |
116
|
|
|
""" |
117
|
|
|
# Need to have it here as in case with small test data message sent to |
118
|
|
|
# websocket will overcome response from server |
119
|
|
|
time.sleep(3) |
120
|
|
|
async with websockets.connect( |
121
|
|
|
'ws://asgi:8001/image/ws/submissions/{}/'.format(pk)) as websocket: |
122
|
|
|
await websocket.send(json.dumps(message)) |
123
|
|
|
|