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#!/usr/bin/env python3 |
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# -*- coding: utf-8 -*- |
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""" |
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Created on Mon Jan 21 15:15:09 2019 |
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@author: Paolo Cozzi <[email protected]> |
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""" |
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import redis |
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import python_jwt |
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from billiard.einfo import ExceptionInfo |
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from unittest.mock import patch, PropertyMock |
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from django.core import mail |
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from django.conf import settings |
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from django.db.models import Q |
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from django.utils import timezone |
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from common.constants import READY, ERROR, WAITING |
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from common.tests import PersonMixinTestCase, WebSocketMixin |
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from image_app.models import Submission, Person, Name |
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def generate_token(now=None, domains=['subs.test-team-1']): |
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"""A function to generate a 'fake' token""" |
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if not now: |
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now = int(timezone.now().timestamp()) |
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claims = { |
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'iss': 'https://explore.aai.ebi.ac.uk/sp', |
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'iat': now, |
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'exp': now+3600, |
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'sub': 'usr-f1801430-51e1-4718-8fca-778887087bad', |
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'email': '[email protected]', |
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'nickname': 'foo', |
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'name': 'Foo Bar', |
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'domains': domains |
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} |
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return python_jwt.generate_jwt( |
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claims, |
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algorithm='RS256') |
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class BaseMixin(PersonMixinTestCase): |
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# an attribute for PersonMixinTestCase |
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person = Person |
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fixtures = [ |
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'biosample/account', |
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'biosample/managedteam', |
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'image_app/animal', |
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'image_app/dictbreed', |
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'image_app/dictcountry', |
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'image_app/dictrole', |
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'image_app/dictsex', |
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'image_app/dictspecie', |
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'image_app/dictstage', |
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'image_app/dictuberon', |
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'image_app/name', |
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'image_app/ontology', |
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'image_app/organization', |
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'image_app/publication', |
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'image_app/sample', |
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'image_app/submission', |
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'image_app/user' |
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] |
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def setUp(self): |
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# calling my base class setup |
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super().setUp() |
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# track submission ID |
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self.submission_id = 1 |
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# get a submission object |
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self.submission_obj = Submission.objects.get(pk=self.submission_id) |
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# set a status which I can submit (equal as calling submit by view) |
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self.submission_obj.status = WAITING |
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self.submission_obj.message = "Waiting for biosample submission" |
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self.submission_obj.save() |
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# get the names I want to submit |
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self.name_qs = Name.objects.filter( |
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Q(animal__isnull=False) | Q(sample__isnull=False), |
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submission=self.submission_obj) |
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# set status for names, like validation does. Update only animal |
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# and sample names (excluding unkwnon animals) |
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self.name_qs.update(status=READY) |
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# count number of names in UID for such submission (exclude |
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# unknown animals) |
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self.n_to_submit = self.name_qs.count() |
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# starting mocked objects |
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self.mock_root_patcher = patch('pyUSIrest.client.Root') |
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self.mock_root = self.mock_root_patcher.start() |
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# start root object |
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self.my_root = self.mock_root.return_value |
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# mocking chain |
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self.my_team = self.my_root.get_team_by_name.return_value |
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self.my_team.name = "subs.test-team-1" |
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# mocking a new submission |
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self.new_submission = self.my_team.create_submission.return_value |
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self.new_submission.name = "new-submission" |
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# set status. Because of the way mock attributes are stored you can’t |
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# directly attach a PropertyMock to a mock object. Instead you can |
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# attach it to the mock type object: |
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self.new_submission.propertymock = PropertyMock(return_value='Draft') |
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type(self.new_submission).status = self.new_submission.propertymock |
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# mocking get_submission_by_name |
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self.my_submission = self.my_root.get_submission_by_name.return_value |
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self.my_submission.name = "test-submission" |
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self.my_submission.propertymock = PropertyMock(return_value='Draft') |
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type(self.my_submission).status = self.my_submission.propertymock |
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class TaskFailureMixin(WebSocketMixin, BaseMixin): |
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View Code Duplication |
def test_on_failure(self): |
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"""Testing on failure methods""" |
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exc = Exception("Test") |
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task_id = "test_task_id" |
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args = [self.submission_id] |
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kwargs = {} |
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einfo = ExceptionInfo |
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# call on_failure method |
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self.my_task.on_failure(exc, task_id, args, kwargs, einfo) |
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# check submission status and message |
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submission = Submission.objects.get(pk=self.submission_id) |
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# check submission.state changed |
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self.assertEqual(submission.status, ERROR) |
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self.assertEqual( |
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submission.message, |
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"Error in biosample submission: Test") |
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# test email sent |
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self.assertEqual(len(mail.outbox), 1) |
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# read email |
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email = mail.outbox[0] |
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self.assertEqual( |
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"Error in biosample submission %s" % self.submission_id, |
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email.subject) |
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message = 'Error' |
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notification_message = 'Error in biosample submission: Test' |
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# calling a WebSocketMixin method |
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self.check_message(message, notification_message) |
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class RedisMixin(): |
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"""A class to setup a test token in redis database""" |
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# this will be the token key in redis database |
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submission_key = "token:submission:1:test" |
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@classmethod |
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def setUpClass(cls): |
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# calling my base class setup |
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super().setUpClass() |
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cls.redis = redis.StrictRedis( |
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host=settings.REDIS_HOST, |
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port=settings.REDIS_PORT, |
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db=settings.REDIS_DB) |
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# generate a token |
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cls.token = generate_token(domains=['subs.test-team-1']) |
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# write token to database |
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cls.redis.set(cls.submission_key, cls.token, ex=3600) |
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@classmethod |
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def tearDownClass(cls): |
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if cls.redis.exists(cls.submission_key): |
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cls.redis.delete(cls.submission_key) |
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super().tearDownClass() |
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cnr-ibba /
IMAGE-InjectTool
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