|
1
|
|
|
#!/usr/bin/env python3 |
|
2
|
|
|
# -*- coding: utf-8 -*- |
|
3
|
|
|
""" |
|
4
|
|
|
Created on Mon Jan 28 11:09:02 2019 |
|
5
|
|
|
|
|
6
|
|
|
@author: Paolo Cozzi <[email protected]> |
|
7
|
|
|
""" |
|
8
|
|
|
|
|
9
|
|
|
from django.db import models |
|
10
|
|
|
from django.contrib.postgres.fields import ArrayField |
|
11
|
|
|
|
|
12
|
|
|
from image_app.models import Name, Animal, Sample, Submission |
|
13
|
|
|
|
|
14
|
|
|
|
|
15
|
|
|
class ValidationResult(models.Model): |
|
16
|
|
|
name = models.OneToOneField( |
|
17
|
|
|
Name, |
|
18
|
|
|
on_delete=models.CASCADE) |
|
19
|
|
|
|
|
20
|
|
|
status = models.CharField( |
|
21
|
|
|
max_length=255, |
|
22
|
|
|
blank=False, |
|
23
|
|
|
null=True) |
|
24
|
|
|
|
|
25
|
|
|
messages = ArrayField( |
|
26
|
|
|
models.TextField(max_length=255, blank=True), |
|
27
|
|
|
default=list |
|
28
|
|
|
) |
|
29
|
|
|
|
|
30
|
|
|
def __str__(self): |
|
31
|
|
|
return "%s:%s" % (self.name, self.status) |
|
32
|
|
|
|
|
33
|
|
|
|
|
34
|
|
|
class ValidationSummary(models.Model): |
|
35
|
|
|
submission = models.ForeignKey( |
|
36
|
|
|
Submission, |
|
37
|
|
|
on_delete=models.CASCADE) |
|
38
|
|
|
|
|
39
|
|
|
all_count = models.PositiveIntegerField( |
|
40
|
|
|
default=0, |
|
41
|
|
|
help_text="number of all samples or animals in a submission") |
|
42
|
|
|
|
|
43
|
|
|
validation_known_count = models.PositiveIntegerField(default=0) |
|
44
|
|
|
|
|
45
|
|
|
issues_count = models.PositiveIntegerField( |
|
46
|
|
|
default=0, |
|
47
|
|
|
help_text="number of samples or animals with issues in validation") |
|
48
|
|
|
|
|
49
|
|
|
pass_count = models.PositiveIntegerField(default=0) |
|
50
|
|
|
warning_count = models.PositiveIntegerField(default=0) |
|
51
|
|
|
error_count = models.PositiveIntegerField(default=0) |
|
52
|
|
|
|
|
53
|
|
|
# TODO: should this be a ENUM object? |
|
54
|
|
|
type = models.CharField(max_length=6, blank=True, null=True) |
|
55
|
|
|
|
|
56
|
|
|
messages = ArrayField( |
|
57
|
|
|
models.TextField(max_length=255, blank=True), |
|
58
|
|
|
default=list |
|
59
|
|
|
) |
|
60
|
|
|
|
|
61
|
|
|
def get_unknown_count(self): |
|
62
|
|
|
"""Returns number of samples or animals with unknown validation""" |
|
63
|
|
|
|
|
64
|
|
|
return self.all_count - self.validation_known_count |
|
65
|
|
|
|
|
66
|
|
|
def reset_all_count(self): |
|
67
|
|
|
"""Set all_count column according to Animal/Sample objects""" |
|
68
|
|
|
|
|
69
|
|
|
if self.type == "animal": |
|
70
|
|
|
self.all_count = Animal.objects.filter( |
|
71
|
|
|
name__submission=self.submission).count() |
|
72
|
|
|
|
|
73
|
|
|
elif self.type == "sample": |
|
74
|
|
|
self.all_count = Sample.objects.filter( |
|
75
|
|
|
name__submission=self.submission).count() |
|
76
|
|
|
|
|
77
|
|
|
else: |
|
78
|
|
|
raise Exception("Unknown type '%s'" % (self.type)) |
|
79
|
|
|
|
|
80
|
|
|
self.save() |
|
81
|
|
|
|
|
82
|
|
|
def reset(self): |
|
83
|
|
|
"""Sets all counts to 0, except all_count field""" |
|
84
|
|
|
self.pass_count = 0 |
|
85
|
|
|
self.warning_count = 0 |
|
86
|
|
|
self.error_count = 0 |
|
87
|
|
|
self.issues_count = 0 |
|
88
|
|
|
self.validation_known_count = 0 |
|
89
|
|
|
self.messages = list() |
|
90
|
|
|
self.save() |
|
91
|
|
|
|
cnr-ibba /
IMAGE-InjectTool
