submissions.views

Complexity

Total Complexity

40

Size/Duplication

Total Lines	440
Duplicated Lines	8.18 %

Importance

Changes

0

15 Methods

Rating	Name	Duplication	Size	Complexity
A	DeleteSubmissionView.delete()	0	16	1
A	EditSubmissionView.dispatch()	18	18	3
A	EditSubmissionView.get_context_data()	0	8	1
A	DeleteSubmissionView.get_context_data()	0	21	3
A	ReloadSubmissionView.form_valid()	0	45	3
A	ReloadSubmissionView.form_invalid()	0	7	1
A	DeleteSubmissionView.dispatch()	18	18	3
A	EditSubmissionView.get_queryset()	0	16	1
B	MessagesSubmissionMixin.get_context_data()	0	26	5
A	CreateSubmissionView.form_invalid()	0	7	1
A	SubmissionValidationSummaryView.get_context_data()	0	10	2
A	SubmissionValidationSummaryFixErrorsView.get_queryset()	0	15	5
A	DetailSubmissionView.get_context_data()	0	15	1
A	SubmissionValidationSummaryFixErrorsView.get_context_data()	0	24	2
A	CreateSubmissionView.form_valid()	0	43	3

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Tue Jul 24 15:49:23 2018

@author: Paolo Cozzi <cozzi@ibba.cnr.it>
"""

import logging
import ast
import re
from django.core.exceptions import ObjectDoesNotExist

from django.contrib import messages
from django.contrib.auth.mixins import LoginRequiredMixin
from django.db.models import Q
from django.http import HttpResponseRedirect
from django.views.generic import (
    CreateView, DetailView, ListView, UpdateView, DeleteView)
from django.shortcuts import get_object_or_404, redirect
from django.urls import reverse_lazy, reverse

from common.constants import (
    WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE,
    VALIDATION_MESSAGES, VALIDATION_MESSAGES_ATTRIBUTES)
from common.helpers import get_deleted_objects
from common.views import OwnerMixin
from cryoweb.tasks import import_from_cryoweb
from image_app.models import Submission, Name, Animal, Sample
from crbanim.tasks import ImportCRBAnimTask
from validation.helpers import construct_validation_message
from validation.models import ValidationSummary
from animals.tasks import BatchUpdateAnimals
from samples.tasks import BatchUpdateSamples

from .forms import SubmissionForm, ReloadForm

# Get an instance of a logger
logger = logging.getLogger(__name__)


class CreateSubmissionView(LoginRequiredMixin, CreateView):
    form_class = SubmissionForm
    model = Submission

    # template name is derived from model position and views type.
    # in this case, ir will be 'image_app/submission_form.html' so
    # i need to clearly specify it
    template_name = "submissions/submission_form.html"

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(CreateSubmissionView, self).form_invalid(form)

    # add user to this object
    def form_valid(self, form):
        self.object = form.save(commit=False)
        self.object.owner = self.request.user

        # I will have a different loading function accordingly with data type
        if self.object.datasource_type == CRYOWEB_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb importing process with task %s" % res.task_id)

        # I will have a different loading function accordingly with data type
        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # update object and force status
            self.object.message = "waiting for data loading"
            self.object.status = WAITING
            self.object.save()

            # create a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim importing process with task %s" % res.task_id)

        else:
            message = "{datasource} import is not implemented".format(
                datasource=self.object.get_datasource_type_display())

            self.object.message = message
            self.object.status = ERROR
            self.object.save()

            logger.error(message)

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class MessagesSubmissionMixin(object):
    """Display messages in SubmissionViews"""

    # https://stackoverflow.com/a/45696442
    def get_context_data(self, **kwargs):
        data = super().get_context_data(**kwargs)

        # get the submission message
        message = self.submission.message

        # check if data are loaded or not
        if self.submission.status in [WAITING, SUBMITTED]:
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

        elif self.submission.status in [ERROR, NEED_REVISION]:
            messages.error(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-danger")

        elif message is not None and message != '':
            messages.info(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-info")

        return data


class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_detail.html"

    def get_context_data(self, **kwargs):
        # pass self.object to a new submission attribute in order to call
        # MessagesSubmissionMixin.get_context_data()
        self.submission = self.object

        # Call the base implementation first to get a context
        context = super(DetailSubmissionView, self).get_context_data(**kwargs)

        # add submission report to context
        validation_summary = construct_validation_message(self.submission)

        # HINT: is this computational intensive?
        context["validation_summary"] = validation_summary

        return context


class SubmissionValidationSummaryView(OwnerMixin, DetailView):
    model = Submission
    template_name = "submissions/submission_validation_summary.html"

    def get_context_data(self, **kwargs):
        context = super().get_context_data(**kwargs)
        summary_type = self.kwargs['type']
        try:
            context['validation_summary'] = self.object.validationsummary_set\
                .get(type=summary_type)
        except ObjectDoesNotExist:
            context['validation_summary'] = None
        context['submission'] = Submission.objects.get(pk=self.kwargs['pk'])
        return context


class SubmissionValidationSummaryFixErrorsView(OwnerMixin, ListView):
    template_name = "submissions/submission_validation_summary_fix_errors.html"

    def get_queryset(self):
        ids = list()
        self.summary_type = self.kwargs['type']
        self.submission = Submission.objects.get(pk=self.kwargs['pk'])
        validation_summary = ValidationSummary.objects.get(
            submission=self.submission, type=self.summary_type)
        self.request_message = self.kwargs['msg']
        for message in validation_summary.messages:
            message = ast.literal_eval(message)
            if message['message'] == self.request_message:
                ids = message['ids']
        if self.summary_type == 'animal':
            return Animal.objects.filter(id__in=ids)
        elif self.summary_type == 'sample':
            return Sample.objects.filter(id__in=ids)

    def get_context_data(self, **kwargs):
        # Call the base implementation first to get a context
        context = super(
            SubmissionValidationSummaryFixErrorsView, self
        ).get_context_data(**kwargs)

        # add submission to context
        context["message"] = self.request_message
        context["type"] = self.summary_type

        if re.search(VALIDATION_MESSAGES['coordinate_check'],
                     self.request_message):
            type_of_check = f"coordinate_check_{self.summary_type}"
            context['attributes_to_show'] = VALIDATION_MESSAGES_ATTRIBUTES[
                type_of_check]['attributes_to_show']
            context['attributes_to_edit'] = VALIDATION_MESSAGES_ATTRIBUTES[
                type_of_check]['attributes_to_edit']
        # TODO add checks for other messages
        else:
            context['attributes_to_show'] = []
            context['attributes_to_edit'] = []
        context['submission'] = self.submission

        return context


# a detail view since I need to operate on a submission object
# HINT: rename to a more informative name?
class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView):
    template_name = "submissions/submission_edit.html"
    paginate_by = 10

    def get_queryset(self):
        """Subsetting names relying submission id"""
        self.submission = get_object_or_404(
            Submission,
            pk=self.kwargs['pk'],
            owner=self.request.user)

        # unknown animals should be removed from a submission. They have no
        # data in animal table nor sample
        return Name.objects.select_related(
                "validationresult",
                "animal",
                "sample").filter(
            Q(submission=self.submission) & (
                Q(animal__isnull=False) | Q(sample__isnull=False))
            ).order_by('id')

    def dispatch(self, request, *args, **kwargs):

This code seems to be duplicated in your project.

        handler = super(EditSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "submission") and not self.submission.can_edit():
            message = "Cannot edit submission: current status is: %s" % (
                    self.submission.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.submission.get_absolute_url())

        return handler

    def get_context_data(self, **kwargs):
        # Call the base implementation first to get a context
        context = super(EditSubmissionView, self).get_context_data(**kwargs)

        # add submission to context
        context["submission"] = self.submission

        return context


class ListSubmissionsView(OwnerMixin, ListView):
    model = Submission
    template_name = "submissions/submission_list.html"
    ordering = ['-created_at']
    paginate_by = 10


class ReloadSubmissionView(OwnerMixin, UpdateView):
    form_class = ReloadForm
    model = Submission
    template_name = 'submissions/submission_reload.html'

    def form_invalid(self, form):
        messages.error(
            self.request,
            message="Please correct the errors below",
            extra_tags="alert alert-dismissible alert-danger")

        return super(ReloadSubmissionView, self).form_invalid(form)

    def form_valid(self, form):
        self.object = form.save(commit=False)

        # update object and force status
        self.object.message = "waiting for data loading"
        self.object.status = WAITING
        self.object.save()

        # HINT: can I change datasource type?

        # call the proper method
        if self.object.datasource_type == CRYOWEB_TYPE:
            # a valid submission start a task
            res = import_from_cryoweb.delay(self.object.pk)
            logger.info(
                "Start cryoweb reload process with task %s" % res.task_id)

        elif self.object.datasource_type == CRB_ANIM_TYPE:
            # a valid submission start a task
            my_task = ImportCRBAnimTask()

            # a valid submission start a task
            res = my_task.delay(self.object.pk)
            logger.info(
                "Start crbanim reload process with task %s" % res.task_id)

        else:
            # this is not an invalid form. Template is not implemented
            # it is a error in our application
            # TODO: call the proper method
            message = "{datasource} reload is not implemented".format(
                datasource=self.object.get_datasource_type_display())

            messages.error(
                self.request,
                message,
                extra_tags="alert alert-dismissible alert-danger")

            # set an error message to this submission
            self.object.message = message
            self.object.status = ERROR
            self.object.save()

        # a redirect to self.object.get_absolute_url()
        return HttpResponseRedirect(self.get_success_url())


class DeleteSubmissionView(OwnerMixin, DeleteView):
    model = Submission
    template_name = "submissions/submission_confirm_delete.html"
    success_url = reverse_lazy('image_app:dashboard')

    def dispatch(self, request, *args, **kwargs):

This code seems to be duplicated in your project.

        handler = super(DeleteSubmissionView, self).dispatch(
                request, *args, **kwargs)

        # here I've done get_queryset. Check for submission status
        if hasattr(self, "object") and not self.object.can_edit():
            message = "Cannot delete %s: submission status is: %s" % (
                    self.object, self.object.get_status_display())

            logger.warning(message)
            messages.warning(
                request=self.request,
                message=message,
                extra_tags="alert alert-dismissible alert-warning")

            return redirect(self.object.get_absolute_url())

        return handler

    # https://stackoverflow.com/a/39533619/4385116
    def get_context_data(self, **kwargs):
        # determining related objects
        # TODO: move this to a custom AJAX call
        context = super().get_context_data(**kwargs)

        deletable_objects, model_count, protected = get_deleted_objects(
            [self.object])

        # get only sample and animals from model_count
        info_deleted = {}

        items = ['animals', 'samples']

        for item in items:
            if item in model_count:
                info_deleted[item] = model_count[item]

        # add info to context
        context['info_deleted'] = dict(info_deleted).items()

        return context

    # https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete
    def delete(self, request, *args, **kwargs):
        """
        Add a message after calling base delete method
        """

        httpresponseredirect = super().delete(request, *args, **kwargs)

        message = "Submission %s was successfully deleted" % self.object.title
        logger.info(message)

        messages.info(
            request=self.request,
            message=message,
            extra_tags="alert alert-dismissible alert-info")

        return httpresponseredirect


def fix_validation(request, pk, type):
    # Fetch all required ids from input names and use it as keys
    keys_to_fix = dict()
    for key_to_fix in request.POST:
        if 'to_edit' in key_to_fix:
            keys_to_fix[int(re.search('to_edit(.*)', key_to_fix).groups()[0])] \

The variable int does not seem to be defined.

                = request.POST[key_to_fix]

    submission = Submission.objects.get(pk=pk)
    submission.message = "waiting for data updating"
    submission.status = WAITING
    submission.save()

    # Update validation summary
    summary_obj, created = ValidationSummary.objects.get_or_create(
        submission=submission, type=type)
    summary_obj.submission = submission
    summary_obj.pass_count = 0
    summary_obj.warning_count = 0
    summary_obj.error_count = 0
    summary_obj.issues_count = 0
    summary_obj.validation_known_count = 0
    summary_obj.messages = list()
    summary_obj.save()

    # create a task
    if type == 'animal':
        my_task = BatchUpdateAnimals()
    elif type == 'sample':
        my_task = BatchUpdateSamples()

    # a valid submission start a task
    res = my_task.delay(pk, keys_to_fix)

The variable my_task does not seem to be defined for all execution paths.

    logger.info(
        "Start crbanim importing process with task %s" % res.task_id)
    return HttpResponseRedirect(reverse('submissions:detail', args=(pk,)))