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                #!/usr/bin/env python3  | 
            
            
                                                        
            
                                    
            
            
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                # -*- coding: utf-8 -*-  | 
            
            
                                                        
            
                                    
            
            
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                """  | 
            
            
                                                        
            
                                    
            
            
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                Created on Tue Feb  6 15:04:07 2018  | 
            
            
                                                        
            
                                    
            
            
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                @author: Paolo Cozzi <[email protected]>  | 
            
            
                                                        
            
                                    
            
            
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                """  | 
            
            
                                                        
            
                                    
            
            
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                import os  | 
            
            
                                                        
            
                                    
            
            
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                import logging  | 
            
            
                                                        
            
                                    
            
            
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                import mimetypes  | 
            
            
                                                        
            
                                    
            
            
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                from django.utils.encoding import smart_str  | 
            
            
                                                        
            
                                    
            
            
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                from django.contrib.auth.decorators import login_required  | 
            
            
                                                        
            
                                    
            
            
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                from django.contrib.auth.mixins import LoginRequiredMixin  | 
            
            
                                                        
            
                                    
            
            
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                from django.shortcuts import get_object_or_404  | 
            
            
                                                        
            
                                    
            
            
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                from django.views.generic import TemplateView  | 
            
            
                                                        
            
                                    
            
            
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                from django.conf import settings  | 
            
            
                                                        
            
                                    
            
            
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                from django.http import HttpResponse  | 
            
            
                                                        
            
                                    
            
            
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                from common.storage import ProtectedFileSystemStorage  | 
            
            
                                                        
            
                                    
            
            
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                from common.constants import COMPLETED  | 
            
            
                                                        
            
                                    
            
            
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                from .models import Submission, uid_report  | 
            
            
                                                        
            
                                    
            
            
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                # Get an instance of a logger  | 
            
            
                                                        
            
                                    
            
            
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                logger = logging.getLogger(__name__)  | 
            
            
                                                        
            
                                    
            
            
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                class IndexView(TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    # Just set this Class Object Attribute to the template page.  | 
            
            
                                                        
            
                                    
            
            
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                    # template_name = 'app_name/site.html'  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = 'uid/index.html'  | 
            
            
                                                        
            
                                    
            
            
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                class AboutView(TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    # Just set this Class Object Attribute to the template page.  | 
            
            
                                                        
            
                                    
            
            
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                    # template_name = 'app_name/site.html'  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = 'uid/about.html'  | 
            
            
                                                        
            
                                    
            
            
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                class PrivacyView(TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = "uid/privacy_policy.html"  | 
            
            
                                                        
            
                                    
            
            
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                class TermsView(TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = "uid/terms_and_conditions.html"  | 
            
            
                                                        
            
                                    
            
            
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                class AboutUploadingView(TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = "uid/uploading_data.html"  | 
            
            
                                                        
            
                                    
            
            
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                class DashBoardView(LoginRequiredMixin, TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = "uid/dashboard.html"  | 
            
            
                                                        
            
                                    
            
            
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                class SummaryView(LoginRequiredMixin, TemplateView):  | 
            
            
                                                        
            
                                    
            
            
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                    template_name = "uid/summary.html"  | 
            
            
                                                        
            
                                    
            
            
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                    def get_context_data(self, **kwargs):  | 
            
            
                                                        
            
                                    
            
            
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                        # Call the base implementation first to get a context  | 
            
            
                                                        
            
                                    
            
            
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                        context = super(SummaryView, self).get_context_data(**kwargs)  | 
            
            
                                                        
            
                                    
            
            
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                        # add content to context  | 
            
            
                                                        
            
                                    
            
            
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                        # Add info for datasource  | 
            
            
                                                        
            
                                    
            
            
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                        # count object for a certain user  | 
            
            
                                                        
            
                                    
            
            
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                        context['datasource_count'] = Submission.objects.filter(  | 
            
            
                                                        
            
                                    
            
            
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                            owner=self.request.user).count()  | 
            
            
                                                        
            
                                    
            
            
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                        # count loaded objects into biosample  | 
            
            
                                                        
            
                                    
            
            
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                        context['datasource_completed'] = Submission.objects.filter(  | 
            
            
                                                        
            
                                    
            
            
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                            status=COMPLETED, owner=self.request.user).count()  | 
            
            
                                                        
            
                                    
            
            
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                        # call report from UID model  | 
            
            
                                                        
            
                                    
            
            
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                        context["uid_report"] = uid_report(self.request.user)  | 
            
            
                                                        
            
                                    
            
            
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                        return context  | 
            
            
                                                        
            
                                    
            
            
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                # https://gist.github.com/cobusc/ea1d01611ef05dacb0f33307e292abf4  | 
            
            
                                                        
            
                                    
            
            
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                @login_required  | 
            
            
                                                        
            
                                    
            
            
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                def protected_view(request, path):  | 
            
            
                                                        
            
                                    
            
            
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                    """  | 
            
            
                                                        
            
                                    
            
            
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                    Redirect the request to the path used by nginx for protected media.  | 
            
            
                                                        
            
                                    
            
            
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                    """  | 
            
            
                                                        
            
                                    
            
            
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                    logger.debug("Received path %s for download" % (path)) | 
            
            
                                                        
            
                                    
            
            
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                    # test for submission ownership  | 
            
            
                                                        
            
                                    
            
            
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                    dirname = os.path.dirname(path)  | 
            
            
                                                        
            
                                    
            
            
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                    if dirname == 'data_source':  | 
            
            
                                                        
            
                                    
            
            
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                        # I got a submission. Get a submission belonging to owner or 404  | 
            
            
                                                        
            
                                    
            
            
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                        submission = get_object_or_404(  | 
            
            
                                                        
            
                                    
            
            
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                            Submission,  | 
            
            
                                                        
            
                                    
            
            
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                            owner=request.user,  | 
            
            
                                                        
            
                                    
            
            
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                            uploaded_file=path)  | 
            
            
                                                        
            
                                    
            
            
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                        logger.debug("Got submission %s" % (submission)) | 
            
            
                                                        
            
                                    
            
            
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                    # derive downloadable path. Applies to any protected file  | 
            
            
                                                        
            
                                    
            
            
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                    full_path = os.path.join(  | 
            
            
                                                        
            
                                    
            
            
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                        settings.PROTECTED_MEDIA_LOCATION_PREFIX, path  | 
            
            
                                                        
            
                                    
            
            
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                    )  | 
            
            
                                                        
            
                                    
            
            
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                    file_name = os.path.basename(path)  | 
            
            
                                                        
            
                                    
            
            
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                    # try to determine file type  | 
            
            
                                                        
            
                                    
            
            
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                    file_type, encoding = mimetypes.guess_type(path)  | 
            
            
                                                        
            
                                    
            
            
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                    logger.debug("Detected content type: %s" % (file_type)) | 
            
            
                                                        
            
                                    
            
            
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                    # get file size using protected storage  | 
            
            
                                                        
            
                                    
            
            
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                    storage = ProtectedFileSystemStorage()  | 
            
            
                                                        
            
                                    
            
            
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                    file_size = storage.size(path)  | 
            
            
                                                        
            
                                    
            
            
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                    # try to set file type to response  | 
            
            
                                                        
            
                                    
            
            
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                    # https://djangosnippets.org/snippets/1710/  | 
            
            
                                                        
            
                                    
            
            
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                    if file_type is None:  | 
            
            
                                                        
            
                                    
            
            
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                        file_type = 'application/octet-stream'  | 
            
            
                                                        
            
                                    
            
            
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                    # force django to attach file in response  | 
            
            
                                                        
            
                                    
            
            
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                    response = HttpResponse(content_type=file_type)  | 
            
            
                                                        
            
                                    
            
            
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                    if encoding is not None:  | 
            
            
                                                        
            
                                    
            
            
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                        response['Content-Encoding'] = encoding  | 
            
            
                                                        
            
                                    
            
            
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                    # https://stackoverflow.com/a/1158750/4385116  | 
            
            
                                                        
            
                                    
            
            
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                    response["X-Accel-Redirect"] = smart_str(full_path)  | 
            
            
                                                        
            
                                    
            
            
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                    response['Content-Disposition'] = 'attachment; filename="{}"'.format( | 
            
            
                                                        
            
                                    
            
            
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                        file_name)  | 
            
            
                                                        
            
                                    
            
            
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                    response['Content-Length'] = file_size  | 
            
            
                                                        
            
                                    
            
            
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                    return response  | 
            
            
                                                        
            
                                    
            
            
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