| 1 |  |  | #!/usr/bin/env python3 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 2 |  |  | # -*- coding: utf-8 -*- | 
            
                                                                                                            
                            
            
                                    
            
            
                | 3 |  |  | """ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 4 |  |  | Created on Tue Jul 24 15:49:23 2018 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 5 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 6 |  |  | @author: Paolo Cozzi <[email protected]> | 
            
                                                                                                            
                            
            
                                    
            
            
                | 7 |  |  | """ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 8 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 9 |  |  | import logging | 
            
                                                                                                            
                            
            
                                    
            
            
                | 10 |  |  | import ast | 
            
                                                                                                            
                            
            
                                    
            
            
                | 11 |  |  | import re | 
            
                                                                                                            
                            
            
                                    
            
            
                | 12 |  |  | from django.core.exceptions import ObjectDoesNotExist | 
            
                                                                                                            
                            
            
                                    
            
            
                | 13 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 14 |  |  | from django.contrib import messages | 
            
                                                                                                            
                            
            
                                    
            
            
                | 15 |  |  | from django.contrib.auth.mixins import LoginRequiredMixin | 
            
                                                                                                            
                            
            
                                    
            
            
                | 16 |  |  | from django.db.models import Q | 
            
                                                                                                            
                            
            
                                    
            
            
                | 17 |  |  | from django.http import HttpResponseRedirect | 
            
                                                                                                            
                            
            
                                    
            
            
                | 18 |  |  | from django.views.generic import ( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 19 |  |  |     CreateView, DetailView, ListView, UpdateView, DeleteView) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 20 |  |  | from django.shortcuts import get_object_or_404, redirect | 
            
                                                                                                            
                            
            
                                    
            
            
                | 21 |  |  | from django.urls import reverse_lazy, reverse | 
            
                                                                                                            
                            
            
                                    
            
            
                | 22 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 23 |  |  | from common.constants import ( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 24 |  |  |     WAITING, ERROR, SUBMITTED, NEED_REVISION, CRYOWEB_TYPE, CRB_ANIM_TYPE, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 25 |  |  |     VALIDATION_MESSAGES, VALIDATION_MESSAGES_ATTRIBUTES) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 26 |  |  | from common.helpers import get_deleted_objects, uid2biosample | 
            
                                                                                                            
                            
            
                                    
            
            
                | 27 |  |  | from common.views import OwnerMixin | 
            
                                                                                                            
                            
            
                                    
            
            
                | 28 |  |  | from crbanim.tasks import ImportCRBAnimTask | 
            
                                                                                                            
                            
            
                                    
            
            
                | 29 |  |  | from cryoweb.tasks import import_from_cryoweb | 
            
                                                                                                            
                            
            
                                    
            
            
                | 30 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 31 |  |  | from image_app.models import Submission, Name, Animal, Sample | 
            
                                                                                                            
                            
            
                                    
            
            
                | 32 |  |  | from excel.tasks import ImportTemplateTask | 
            
                                                                                                            
                            
            
                                    
            
            
                | 33 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 34 |  |  | from validation.helpers import construct_validation_message | 
            
                                                                                                            
                            
            
                                    
            
            
                | 35 |  |  | from validation.models import ValidationSummary | 
            
                                                                                                            
                            
            
                                    
            
            
                | 36 |  |  | from animals.tasks import BatchUpdateAnimals | 
            
                                                                                                            
                            
            
                                    
            
            
                | 37 |  |  | from samples.tasks import BatchUpdateSamples | 
            
                                                                                                            
                            
            
                                    
            
            
                | 38 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 39 |  |  | from .forms import SubmissionForm, ReloadForm | 
            
                                                                                                            
                            
            
                                    
            
            
                | 40 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 41 |  |  | # Get an instance of a logger | 
            
                                                                                                            
                            
            
                                    
            
            
                | 42 |  |  | logger = logging.getLogger(__name__) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 43 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 44 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 45 |  |  | class CreateSubmissionView(LoginRequiredMixin, CreateView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 46 |  |  |     form_class = SubmissionForm | 
            
                                                                                                            
                            
            
                                    
            
            
                | 47 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 48 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 49 |  |  |     # template name is derived from model position and views type. | 
            
                                                                                                            
                            
            
                                    
            
            
                | 50 |  |  |     # in this case, ir will be 'image_app/submission_form.html' so | 
            
                                                                                                            
                            
            
                                    
            
            
                | 51 |  |  |     # i need to clearly specify it | 
            
                                                                                                            
                            
            
                                    
            
            
                | 52 |  |  |     template_name = "submissions/submission_form.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 53 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 54 |  |  |     def form_invalid(self, form): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 55 |  |  |         messages.error( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 56 |  |  |             self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 57 |  |  |             message="Please correct the errors below", | 
            
                                                                                                            
                            
            
                                    
            
            
                | 58 |  |  |             extra_tags="alert alert-dismissible alert-danger") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 59 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 60 |  |  |         return super(CreateSubmissionView, self).form_invalid(form) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 61 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 62 |  |  |     # add user to this object | 
            
                                                                                                            
                            
            
                                    
            
            
                | 63 |  |  |     def form_valid(self, form): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 64 |  |  |         self.object = form.save(commit=False) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 65 |  |  |         self.object.owner = self.request.user | 
            
                                                                                                            
                            
            
                                    
            
            
                | 66 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 67 |  |  |         # I will have a different loading function accordingly with data type | 
            
                                                                                                            
                            
            
                                    
            
            
                | 68 |  |  |         if self.object.datasource_type == CRYOWEB_TYPE: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 69 |  |  |             # update object and force status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 70 |  |  |             self.object.message = "waiting for data loading" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 71 |  |  |             self.object.status = WAITING | 
            
                                                                                                            
                            
            
                                    
            
            
                | 72 |  |  |             self.object.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 73 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 74 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 75 |  |  |             res = import_from_cryoweb.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 76 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 77 |  |  |                 "Start cryoweb importing process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 78 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 79 |  |  |         # I will have a different loading function accordingly with data type | 
            
                                                                                                            
                            
            
                                    
            
            
                | 80 |  |  |         elif self.object.datasource_type == CRB_ANIM_TYPE: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 81 |  |  |             # update object and force status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 82 |  |  |             self.object.message = "waiting for data loading" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 83 |  |  |             self.object.status = WAITING | 
            
                                                                                                            
                            
            
                                    
            
            
                | 84 |  |  |             self.object.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 85 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 86 |  |  |             # create a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 87 |  |  |             my_task = ImportCRBAnimTask() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 88 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 89 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 90 |  |  |             res = my_task.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 91 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 92 |  |  |                 "Start crbanim importing process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 93 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 94 |  |  |         else: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 95 |  |  |             # update object and force status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 96 |  |  |             self.object.message = "waiting for data loading" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 97 |  |  |             self.object.status = WAITING | 
            
                                                                                                            
                            
            
                                    
            
            
                | 98 |  |  |             self.object.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 99 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 100 |  |  |             # create a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 101 |  |  |             my_task = ImportTemplateTask() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 102 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 103 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 104 |  |  |             res = my_task.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 105 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 106 |  |  |                 "Start template importing process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 107 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 108 |  |  |         # a redirect to self.object.get_absolute_url() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 109 |  |  |         return HttpResponseRedirect(self.get_success_url()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 110 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 111 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 112 |  |  | class MessagesSubmissionMixin(object): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 113 |  |  |     """Display messages in SubmissionViews""" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 114 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 115 |  |  |     # https://stackoverflow.com/a/45696442 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 116 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 117 |  |  |         data = super().get_context_data(**kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 118 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 119 |  |  |         # get the submission message | 
            
                                                                                                            
                            
            
                                    
            
            
                | 120 |  |  |         message = self.submission.message | 
            
                                                                                                            
                            
            
                                    
            
            
                | 121 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 122 |  |  |         # check if data are loaded or not | 
            
                                                                                                            
                            
            
                                    
            
            
                | 123 |  |  |         if self.submission.status in [WAITING, SUBMITTED]: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 124 |  |  |             messages.warning( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 125 |  |  |                 request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 126 |  |  |                 message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 127 |  |  |                 extra_tags="alert alert-dismissible alert-warning") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 128 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 129 |  |  |         elif self.submission.status in [ERROR, NEED_REVISION]: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 130 |  |  |             messages.error( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 131 |  |  |                 request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 132 |  |  |                 message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 133 |  |  |                 extra_tags="alert alert-dismissible alert-danger") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 134 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 135 |  |  |         elif message is not None and message != '': | 
            
                                                                                                            
                            
            
                                    
            
            
                | 136 |  |  |             messages.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 137 |  |  |                 request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 138 |  |  |                 message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 139 |  |  |                 extra_tags="alert alert-dismissible alert-info") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 140 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 141 |  |  |         return data | 
            
                                                                                                            
                            
            
                                    
            
            
                | 142 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 143 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 144 |  |  | class DetailSubmissionView(MessagesSubmissionMixin, OwnerMixin, DetailView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 145 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 146 |  |  |     template_name = "submissions/submission_detail.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 147 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 148 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 149 |  |  |         # pass self.object to a new submission attribute in order to call | 
            
                                                                                                            
                            
            
                                    
            
            
                | 150 |  |  |         # MessagesSubmissionMixin.get_context_data() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 151 |  |  |         self.submission = self.object | 
            
                                                                                                            
                            
            
                                    
            
            
                | 152 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 153 |  |  |         # Call the base implementation first to get a context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 154 |  |  |         context = super(DetailSubmissionView, self).get_context_data(**kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 155 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 156 |  |  |         # add submission report to context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 157 |  |  |         validation_summary = construct_validation_message(self.submission) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 158 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 159 |  |  |         # HINT: is this computational intensive? | 
            
                                                                                                            
                            
            
                                    
            
            
                | 160 |  |  |         context["validation_summary"] = validation_summary | 
            
                                                                                                            
                            
            
                                    
            
            
                | 161 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 162 |  |  |         return context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 163 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 164 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 165 |  |  | class SubmissionValidationSummaryView(OwnerMixin, DetailView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 166 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 167 |  |  |     template_name = "submissions/submission_validation_summary.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 168 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 169 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 170 |  |  |         context = super().get_context_data(**kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 171 |  |  |         summary_type = self.kwargs['type'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 172 |  |  |         try: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 173 |  |  |             context['validation_summary'] = self.object.validationsummary_set\ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 174 |  |  |                 .get(type=summary_type) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 175 |  |  |         except ObjectDoesNotExist: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 176 |  |  |             context['validation_summary'] = None | 
            
                                                                                                            
                            
            
                                    
            
            
                | 177 |  |  |         context['submission'] = Submission.objects.get(pk=self.kwargs['pk']) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 178 |  |  |         return context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 179 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 180 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 181 |  |  | class SubmissionValidationSummaryFixErrorsView(OwnerMixin, ListView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 182 |  |  |     template_name = "submissions/submission_validation_summary_fix_errors.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 183 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 184 |  |  |     def get_queryset(self): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 185 |  |  |         ids = list() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 186 |  |  |         self.summary_type = self.kwargs['type'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 187 |  |  |         self.submission = Submission.objects.get(pk=self.kwargs['pk']) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 188 |  |  |         self.validation_summary = ValidationSummary.objects.get( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 189 |  |  |             pk=self.kwargs['vk']) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 190 |  |  |         self.message = ast.literal_eval(self.validation_summary.messages[int(self.kwargs['message_counter'])]) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 191 |  |  |         self.offending_column = self.message['offending_column'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 192 |  |  |         if self.summary_type == 'animal': | 
            
                                                                                                            
                            
            
                                    
            
            
                | 193 |  |  |             return Animal.objects.filter(id__in=self.message['ids']) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 194 |  |  |         elif self.summary_type == 'sample': | 
            
                                                                                                            
                            
            
                                    
            
            
                | 195 |  |  |             return Sample.objects.filter(id__in=self.message['ids']) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 196 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 197 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 198 |  |  |         # Call the base implementation first to get a context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 199 |  |  |         context = super( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 200 |  |  |             SubmissionValidationSummaryFixErrorsView, self | 
            
                                                                                                            
                            
            
                                    
            
            
                | 201 |  |  |         ).get_context_data(**kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 202 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 203 |  |  |         # add submission to context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 204 |  |  |         context["message"] = self.message | 
            
                                                                                                            
                            
            
                                    
            
            
                | 205 |  |  |         context["type"] = self.summary_type | 
            
                                                                                                            
                            
            
                                    
            
            
                | 206 |  |  |         context["offending_column"] = self.offending_column.lower() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 207 |  |  |         if re.search(VALIDATION_MESSAGES['coordinate_check'], | 
            
                                                                                                            
                            
            
                                    
            
            
                | 208 |  |  |                      self.message['message']): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 209 |  |  |             type_of_check = f"coordinate_check_{self.summary_type}" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 210 |  |  |             context['attributes_to_show'] = VALIDATION_MESSAGES_ATTRIBUTES[ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 211 |  |  |                 type_of_check]['attributes_to_show'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 212 |  |  |             context['attributes_to_edit'] = [ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 213 |  |  |                 uid2biosample(self.offending_column)] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 214 |  |  |             context['error_type'] = 'coordinate_check' | 
            
                                                                                                            
                            
            
                                    
            
            
                | 215 |  |  |         # TODO add checks for other messages | 
            
                                                                                                            
                            
            
                                    
            
            
                | 216 |  |  |         else: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 217 |  |  |             context['attributes_to_show'] = [] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 218 |  |  |             context['attributes_to_edit'] = [ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 219 |  |  |                 uid2biosample(self.offending_column)] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 220 |  |  |             context['error_type'] = 'error' | 
            
                                                                                                            
                            
            
                                    
            
            
                | 221 |  |  |         context['submission'] = self.submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 222 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 223 |  |  |         return context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 224 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 225 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 226 |  |  | # a detail view since I need to operate on a submission object | 
            
                                                                                                            
                            
            
                                    
            
            
                | 227 |  |  | # HINT: rename to a more informative name? | 
            
                                                                                                            
                            
            
                                    
            
            
                | 228 |  |  | class EditSubmissionView(MessagesSubmissionMixin, OwnerMixin, ListView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 229 |  |  |     template_name = "submissions/submission_edit.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 230 |  |  |     paginate_by = 10 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 231 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 232 |  |  |     def get_queryset(self): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 233 |  |  |         """Subsetting names relying submission id""" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 234 |  |  |         self.submission = get_object_or_404( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 235 |  |  |             Submission, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 236 |  |  |             pk=self.kwargs['pk'], | 
            
                                                                                                            
                            
            
                                    
            
            
                | 237 |  |  |             owner=self.request.user) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 238 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 239 |  |  |         # unknown animals should be removed from a submission. They have no | 
            
                                                                                                            
                            
            
                                    
            
            
                | 240 |  |  |         # data in animal table nor sample | 
            
                                                                                                            
                            
            
                                    
            
            
                | 241 |  |  |         return Name.objects.select_related( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 242 |  |  |                 "validationresult", | 
            
                                                                                                            
                            
            
                                    
            
            
                | 243 |  |  |                 "animal", | 
            
                                                                                                            
                            
            
                                    
            
            
                | 244 |  |  |                 "sample").filter( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 245 |  |  |             Q(submission=self.submission) & ( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 246 |  |  |                 Q(animal__isnull=False) | Q(sample__isnull=False)) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 247 |  |  |             ).order_by('id') | 
            
                                                                                                            
                            
            
                                    
            
            
                | 248 |  |  |  | 
            
                                                                                                            
                            
            
                                                                    
                                                                                                        
            
            
                | 249 |  | View Code Duplication |     def dispatch(self, request, *args, **kwargs): | 
                            
                    |  |  |  | 
                                                                                        
                                                                                     | 
            
                                                                                                            
                            
            
                                    
            
            
                | 250 |  |  |         handler = super(EditSubmissionView, self).dispatch( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 251 |  |  |                 request, *args, **kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 252 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 253 |  |  |         # here I've done get_queryset. Check for submission status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 254 |  |  |         if hasattr(self, "submission") and not self.submission.can_edit(): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 255 |  |  |             message = "Cannot edit submission: current status is: %s" % ( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 256 |  |  |                     self.submission.get_status_display()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 257 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 258 |  |  |             logger.warning(message) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 259 |  |  |             messages.warning( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 260 |  |  |                 request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 261 |  |  |                 message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 262 |  |  |                 extra_tags="alert alert-dismissible alert-warning") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 263 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 264 |  |  |             return redirect(self.submission.get_absolute_url()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 265 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 266 |  |  |         return handler | 
            
                                                                                                            
                                                                
            
                                    
            
            
                | 267 |  |  |  | 
            
                                                                        
                            
            
                                    
            
            
                | 268 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                        
                            
            
                                    
            
            
                | 269 |  |  |         # Call the base implementation first to get a context | 
            
                                                                        
                            
            
                                    
            
            
                | 270 |  |  |         context = super(EditSubmissionView, self).get_context_data(**kwargs) | 
            
                                                                        
                            
            
                                    
            
            
                | 271 |  |  |  | 
            
                                                                        
                            
            
                                    
            
            
                | 272 |  |  |         # add submission to context | 
            
                                                                        
                            
            
                                    
            
            
                | 273 |  |  |         context["submission"] = self.submission | 
            
                                                                        
                            
            
                                    
            
            
                | 274 |  |  |  | 
            
                                                                        
                            
            
                                    
            
            
                | 275 |  |  |         return context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 276 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 277 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 278 |  |  | class ListSubmissionsView(OwnerMixin, ListView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 279 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 280 |  |  |     template_name = "submissions/submission_list.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 281 |  |  |     ordering = ['-created_at'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 282 |  |  |     paginate_by = 10 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 283 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 284 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 285 |  |  | class ReloadSubmissionView(OwnerMixin, UpdateView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 286 |  |  |     form_class = ReloadForm | 
            
                                                                                                            
                            
            
                                    
            
            
                | 287 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 288 |  |  |     template_name = 'submissions/submission_reload.html' | 
            
                                                                                                            
                            
            
                                    
            
            
                | 289 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 290 |  |  |     def form_invalid(self, form): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 291 |  |  |         messages.error( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 292 |  |  |             self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 293 |  |  |             message="Please correct the errors below", | 
            
                                                                                                            
                            
            
                                    
            
            
                | 294 |  |  |             extra_tags="alert alert-dismissible alert-danger") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 295 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 296 |  |  |         return super(ReloadSubmissionView, self).form_invalid(form) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 297 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 298 |  |  |     def form_valid(self, form): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 299 |  |  |         self.object = form.save(commit=False) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 300 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 301 |  |  |         # update object and force status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 302 |  |  |         self.object.message = "waiting for data loading" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 303 |  |  |         self.object.status = WAITING | 
            
                                                                                                            
                            
            
                                    
            
            
                | 304 |  |  |         self.object.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 305 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 306 |  |  |         # HINT: can I change datasource type? | 
            
                                                                                                            
                            
            
                                    
            
            
                | 307 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 308 |  |  |         # call the proper method | 
            
                                                                                                            
                            
            
                                    
            
            
                | 309 |  |  |         if self.object.datasource_type == CRYOWEB_TYPE: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 310 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 311 |  |  |             res = import_from_cryoweb.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 312 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 313 |  |  |                 "Start cryoweb reload process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 314 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 315 |  |  |         elif self.object.datasource_type == CRB_ANIM_TYPE: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 316 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 317 |  |  |             my_task = ImportCRBAnimTask() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 318 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 319 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 320 |  |  |             res = my_task.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 321 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 322 |  |  |                 "Start crbanim reload process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 323 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 324 |  |  |         else: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 325 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 326 |  |  |             my_task = ImportTemplateTask() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 327 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 328 |  |  |             # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 329 |  |  |             res = my_task.delay(self.object.pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 330 |  |  |             logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 331 |  |  |                 "Start template reload process with task %s" % res.task_id) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 332 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 333 |  |  |         # a redirect to self.object.get_absolute_url() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 334 |  |  |         return HttpResponseRedirect(self.get_success_url()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 335 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 336 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 337 |  |  | class DeleteSubmissionView(OwnerMixin, DeleteView): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 338 |  |  |     model = Submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 339 |  |  |     template_name = "submissions/submission_confirm_delete.html" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 340 |  |  |     success_url = reverse_lazy('image_app:dashboard') | 
            
                                                                                                            
                            
            
                                    
            
            
                | 341 |  |  |  | 
            
                                                                                                            
                            
            
                                                                    
                                                                                                        
            
            
                | 342 |  | View Code Duplication |     def dispatch(self, request, *args, **kwargs): | 
                            
                    |  |  |  | 
                                                                                        
                                                                                     | 
            
                                                                                                            
                            
            
                                    
            
            
                | 343 |  |  |         handler = super(DeleteSubmissionView, self).dispatch( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 344 |  |  |                 request, *args, **kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 345 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 346 |  |  |         # here I've done get_queryset. Check for submission status | 
            
                                                                                                            
                            
            
                                    
            
            
                | 347 |  |  |         if hasattr(self, "object") and not self.object.can_edit(): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 348 |  |  |             message = "Cannot delete %s: submission status is: %s" % ( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 349 |  |  |                     self.object, self.object.get_status_display()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 350 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 351 |  |  |             logger.warning(message) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 352 |  |  |             messages.warning( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 353 |  |  |                 request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 354 |  |  |                 message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 355 |  |  |                 extra_tags="alert alert-dismissible alert-warning") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 356 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 357 |  |  |             return redirect(self.object.get_absolute_url()) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 358 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 359 |  |  |         return handler | 
            
                                                                                                            
                            
            
                                    
            
            
                | 360 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 361 |  |  |     # https://stackoverflow.com/a/39533619/4385116 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 362 |  |  |     def get_context_data(self, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 363 |  |  |         # determining related objects | 
            
                                                                                                            
                            
            
                                    
            
            
                | 364 |  |  |         # TODO: move this to a custom AJAX call | 
            
                                                                                                            
                            
            
                                    
            
            
                | 365 |  |  |         context = super().get_context_data(**kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 366 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 367 |  |  |         deletable_objects, model_count, protected = get_deleted_objects( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 368 |  |  |             [self.object]) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 369 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 370 |  |  |         # get only sample and animals from model_count | 
            
                                                                                                            
                            
            
                                    
            
            
                | 371 |  |  |         info_deleted = {} | 
            
                                                                                                            
                            
            
                                    
            
            
                | 372 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 373 |  |  |         items = ['animals', 'samples'] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 374 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 375 |  |  |         for item in items: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 376 |  |  |             if item in model_count: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 377 |  |  |                 info_deleted[item] = model_count[item] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 378 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 379 |  |  |         # add info to context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 380 |  |  |         context['info_deleted'] = dict(info_deleted).items() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 381 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 382 |  |  |         return context | 
            
                                                                                                            
                            
            
                                    
            
            
                | 383 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 384 |  |  |     # https://ccbv.co.uk/projects/Django/1.11/django.views.generic.edit/DeleteView/#delete | 
            
                                                                                                            
                            
            
                                    
            
            
                | 385 |  |  |     def delete(self, request, *args, **kwargs): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 386 |  |  |         """ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 387 |  |  |         Add a message after calling base delete method | 
            
                                                                                                            
                            
            
                                    
            
            
                | 388 |  |  |         """ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 389 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 390 |  |  |         httpresponseredirect = super().delete(request, *args, **kwargs) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 391 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 392 |  |  |         message = "Submission %s was successfully deleted" % self.object.title | 
            
                                                                                                            
                            
            
                                    
            
            
                | 393 |  |  |         logger.info(message) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 394 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 395 |  |  |         messages.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 396 |  |  |             request=self.request, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 397 |  |  |             message=message, | 
            
                                                                                                            
                            
            
                                    
            
            
                | 398 |  |  |             extra_tags="alert alert-dismissible alert-info") | 
            
                                                                                                            
                            
            
                                    
            
            
                | 399 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 400 |  |  |         return httpresponseredirect | 
            
                                                                                                            
                            
            
                                    
            
            
                | 401 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 402 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 403 |  |  | def fix_validation(request, pk, record_type, error): | 
            
                                                                                                            
                            
            
                                    
            
            
                | 404 |  |  |     # Fetch all required ids from input names and use it as keys | 
            
                                                                                                            
                            
            
                                    
            
            
                | 405 |  |  |     keys_to_fix = dict() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 406 |  |  |     for key_to_fix in request.POST: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 407 |  |  |         if 'to_edit' in key_to_fix: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 408 |  |  |             keys_to_fix[int(re.search('to_edit(.*)', key_to_fix).groups()[0])] \ | 
                            
                    |  |  |  | 
                                                                                        
                                                                                     | 
            
                                                                                                            
                            
            
                                    
            
            
                | 409 |  |  |                 = request.POST[key_to_fix] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 410 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 411 |  |  |     submission = Submission.objects.get(pk=pk) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 412 |  |  |     submission.message = "waiting for data updating" | 
            
                                                                                                            
                            
            
                                    
            
            
                | 413 |  |  |     submission.status = WAITING | 
            
                                                                                                            
                            
            
                                    
            
            
                | 414 |  |  |     submission.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 415 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 416 |  |  |     # Update validation summary | 
            
                                                                                                            
                            
            
                                    
            
            
                | 417 |  |  |     summary_obj, created = ValidationSummary.objects.get_or_create( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 418 |  |  |         submission=submission, type=record_type) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 419 |  |  |     summary_obj.submission = submission | 
            
                                                                                                            
                            
            
                                    
            
            
                | 420 |  |  |     summary_obj.pass_count = 0 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 421 |  |  |     summary_obj.warning_count = 0 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 422 |  |  |     summary_obj.error_count = 0 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 423 |  |  |     summary_obj.issues_count = 0 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 424 |  |  |     summary_obj.validation_known_count = 0 | 
            
                                                                                                            
                            
            
                                    
            
            
                | 425 |  |  |     summary_obj.messages = list() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 426 |  |  |     summary_obj.save() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 427 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 428 |  |  |     # create a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 429 |  |  |     if record_type == 'animal': | 
            
                                                                                                            
                            
            
                                    
            
            
                | 430 |  |  |         my_task = BatchUpdateAnimals() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 431 |  |  |         attribute_name = VALIDATION_MESSAGES_ATTRIBUTES[f"{error}_animal"][ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 432 |  |  |             'attributes_to_edit'][0] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 433 |  |  |     elif record_type == 'sample': | 
            
                                                                                                            
                            
            
                                    
            
            
                | 434 |  |  |         my_task = BatchUpdateSamples() | 
            
                                                                                                            
                            
            
                                    
            
            
                | 435 |  |  |         attribute_name = VALIDATION_MESSAGES_ATTRIBUTES[f"{error}_sample"][ | 
            
                                                                                                            
                            
            
                                    
            
            
                | 436 |  |  |             'attributes_to_edit'][0] | 
            
                                                                                                            
                            
            
                                    
            
            
                | 437 |  |  |     else: | 
            
                                                                                                            
                            
            
                                    
            
            
                | 438 |  |  |         return HttpResponseRedirect(reverse('submissions:detail', args=(pk,))) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 439 |  |  |  | 
            
                                                                                                            
                            
            
                                    
            
            
                | 440 |  |  |     # a valid submission start a task | 
            
                                                                                                            
                            
            
                                    
            
            
                | 441 |  |  |     res = my_task.delay(pk, keys_to_fix, attribute_name) | 
            
                                                                                                            
                            
            
                                    
            
            
                | 442 |  |  |     logger.info( | 
            
                                                                                                            
                            
            
                                    
            
            
                | 443 |  |  |         "Start fix validation process with task %s" % res.task_id) | 
            
                                                                                                            
                                                                
            
                                    
            
            
                | 444 |  |  |     return HttpResponseRedirect(reverse('submissions:detail', args=(pk,))) | 
            
                                                        
            
                                    
            
            
                | 445 |  |  |  |