|
1
|
|
|
#!/usr/bin/env python3 |
|
2
|
|
|
# -*- coding: utf-8 -*- |
|
3
|
|
|
""" |
|
4
|
|
|
Created on Thu Sep 13 16:19:19 2018 |
|
5
|
|
|
|
|
6
|
|
|
@author: Paolo Cozzi <[email protected]> |
|
7
|
|
|
""" |
|
8
|
|
|
|
|
9
|
|
|
from unittest.mock import patch, Mock |
|
10
|
|
|
|
|
11
|
|
|
from django.test import TestCase |
|
12
|
|
|
|
|
13
|
|
|
from ..tasks import ImportCryowebTask |
|
14
|
|
|
from ..helpers import CryoWebImportError |
|
15
|
|
|
|
|
16
|
|
|
|
|
17
|
|
|
class ImportCryowebTest(TestCase): |
|
18
|
|
|
# import this file and populate database once |
|
19
|
|
|
fixtures = [ |
|
20
|
|
|
"image_app/user", |
|
21
|
|
|
"image_app/dictrole", |
|
22
|
|
|
"image_app/organization", |
|
23
|
|
|
"image_app/dictcountry", |
|
24
|
|
|
"image_app/submission", |
|
25
|
|
|
"image_app/dictsex", |
|
26
|
|
|
"language/dictspecie", |
|
27
|
|
|
"language/speciesynonym" |
|
28
|
|
|
] |
|
29
|
|
|
|
|
30
|
|
|
def setUp(self): |
|
31
|
|
|
# calling my base setup |
|
32
|
|
|
super().setUp() |
|
33
|
|
|
|
|
34
|
|
|
# define my task |
|
35
|
|
|
self.my_task = ImportCryowebTask() |
|
36
|
|
|
|
|
37
|
|
|
# change lock_id (useful when running test during cron) |
|
38
|
|
|
self.my_task.lock_id = "test-ImportCryowebTask" |
|
39
|
|
|
|
|
40
|
|
|
# mocking annotate with zooma function |
|
41
|
|
|
self.mock_annotateall_patcher = patch('submissions.tasks.AnnotateAll') |
|
42
|
|
|
self.mock_annotateall = self.mock_annotateall_patcher.start() |
|
43
|
|
|
|
|
44
|
|
|
def tearDown(self): |
|
45
|
|
|
# stopping mock objects |
|
46
|
|
|
self.mock_annotateall_patcher.stop() |
|
47
|
|
|
|
|
48
|
|
|
# calling base methods |
|
49
|
|
|
super().tearDown() |
|
50
|
|
|
|
|
51
|
|
|
# patching upload_cryoweb and truncate database |
|
52
|
|
|
@patch("cryoweb.tasks.truncate_database") |
|
53
|
|
|
@patch("cryoweb.tasks.cryoweb_import", return_value=True) |
|
54
|
|
|
@patch("cryoweb.tasks.upload_cryoweb", return_value=True) |
|
55
|
|
|
def test_import_from_cryoweb( |
|
56
|
|
|
self, my_upload, my_import, my_truncate): |
|
57
|
|
|
"""Testing cryoweb import""" |
|
58
|
|
|
|
|
59
|
|
|
# NOTE that I'm calling the function directly, without delay |
|
60
|
|
|
# (AsyncResult). I've patched the time consuming task |
|
61
|
|
|
res = self.my_task.run(submission_id=1) |
|
62
|
|
|
|
|
63
|
|
|
# assert a success with data uploading |
|
64
|
|
|
self.assertEqual(res, "success") |
|
65
|
|
|
|
|
66
|
|
|
# assert that method were called |
|
67
|
|
|
self.assertTrue(my_upload.called) |
|
68
|
|
|
self.assertTrue(my_import.called) |
|
69
|
|
|
|
|
70
|
|
|
# ensure that database is truncated |
|
71
|
|
|
self.assertTrue(my_truncate.called) |
|
72
|
|
|
|
|
73
|
|
|
# assering zooma called |
|
74
|
|
|
self.assertTrue(self.mock_annotateall.called) |
|
75
|
|
|
|
|
76
|
|
|
@patch('submissions.helpers.send_message_to_websocket') |
|
77
|
|
|
@patch('asyncio.get_event_loop') |
|
78
|
|
|
@patch("cryoweb.helpers.cryoweb_has_data", return_value=True) |
|
79
|
|
|
@patch("cryoweb.tasks.truncate_database") |
|
80
|
|
|
def test_import_has_data( |
|
81
|
|
|
self, |
|
82
|
|
|
my_truncate, |
|
83
|
|
|
my_has_data, |
|
84
|
|
|
asyncio_mock, |
|
85
|
|
|
send_message_to_websocket_mock): |
|
86
|
|
|
"""Test cryoweb import with data in cryoweb database""" |
|
87
|
|
|
|
|
88
|
|
|
# mocking asyncio |
|
89
|
|
|
tmp = asyncio_mock.return_value |
|
90
|
|
|
tmp.run_until_complete = Mock() |
|
91
|
|
|
|
|
92
|
|
|
# importing data in staged area with data raises an exception |
|
93
|
|
|
self.assertRaises( |
|
94
|
|
|
CryoWebImportError, |
|
95
|
|
|
self.my_task.run, |
|
96
|
|
|
submission_id=1) |
|
97
|
|
|
|
|
98
|
|
|
self.assertTrue(my_has_data.called) |
|
99
|
|
|
|
|
100
|
|
|
# When I got an exception, task escapes without cleaning database |
|
101
|
|
|
self.assertFalse(my_truncate.called) |
|
102
|
|
|
|
|
103
|
|
|
# asserting mocked asyncio |
|
104
|
|
|
self.assertEqual(asyncio_mock.call_count, 1) |
|
105
|
|
|
self.assertEqual(tmp.run_until_complete.call_count, 1) |
|
106
|
|
|
self.assertEqual(send_message_to_websocket_mock.call_count, 1) |
|
107
|
|
|
send_message_to_websocket_mock.assert_called_with( |
|
108
|
|
|
{'message': 'Error', |
|
109
|
|
|
'notification_message': 'Error in importing data: ' |
|
110
|
|
|
'Cryoweb has data'}, 1) |
|
111
|
|
|
|
|
112
|
|
|
# assering zooma not called |
|
113
|
|
|
self.assertFalse(self.mock_annotateall.called) |
|
114
|
|
|
|
|
115
|
|
|
@patch("cryoweb.tasks.truncate_database") |
|
116
|
|
|
@patch("cryoweb.tasks.cryoweb_import") |
|
117
|
|
|
@patch("cryoweb.tasks.upload_cryoweb", return_value=False) |
|
118
|
|
|
def test_error_in_uploading( |
|
119
|
|
|
self, my_upload, my_import, my_truncate): |
|
120
|
|
|
"""Testing error in importing data into cryoweb""" |
|
121
|
|
|
|
|
122
|
|
|
res = self.my_task.run(submission_id=1) |
|
123
|
|
|
|
|
124
|
|
|
# assert an error in data uploading |
|
125
|
|
|
self.assertEqual(res, "Error in cryoweb import") |
|
126
|
|
|
|
|
127
|
|
|
# assert that method were called |
|
128
|
|
|
self.assertTrue(my_upload.called) |
|
129
|
|
|
self.assertFalse(my_import.called) |
|
130
|
|
|
|
|
131
|
|
|
# ensure that database is truncated |
|
132
|
|
|
self.assertTrue(my_truncate.called) |
|
133
|
|
|
|
|
134
|
|
|
# assering zooma not called |
|
135
|
|
|
self.assertFalse(self.mock_annotateall.called) |
|
136
|
|
|
|
|
137
|
|
|
@patch("cryoweb.tasks.truncate_database") |
|
138
|
|
|
@patch("cryoweb.tasks.cryoweb_import", return_value=False) |
|
139
|
|
|
@patch("cryoweb.tasks.upload_cryoweb", return_value=True) |
|
140
|
|
|
def test_error_in_uploading2( |
|
141
|
|
|
self, my_upload, my_import, my_truncate): |
|
142
|
|
|
"""Testing error in importing data from cryoweb to UID""" |
|
143
|
|
|
|
|
144
|
|
|
res = self.my_task.run(submission_id=1) |
|
145
|
|
|
|
|
146
|
|
|
# assert an error in data uploading |
|
147
|
|
|
self.assertEqual(res, "Error in cryoweb import") |
|
148
|
|
|
|
|
149
|
|
|
# assert that method were called |
|
150
|
|
|
self.assertTrue(my_upload.called) |
|
151
|
|
|
self.assertTrue(my_import.called) |
|
152
|
|
|
|
|
153
|
|
|
# ensure that database is truncated |
|
154
|
|
|
self.assertTrue(my_truncate.called) |
|
155
|
|
|
|
|
156
|
|
|
# assering zooma not called |
|
157
|
|
|
self.assertFalse(self.mock_annotateall.called) |
|
158
|
|
|
|
|
159
|
|
|
# Test a non blocking instance |
|
160
|
|
|
@patch("redis.lock.Lock.acquire", return_value=False) |
|
161
|
|
|
@patch("cryoweb.helpers.cryoweb_import") |
|
162
|
|
|
@patch("cryoweb.helpers.upload_cryoweb", return_value=True) |
|
163
|
|
|
@patch("cryoweb.models.db_has_data", return_value=False) |
|
164
|
|
|
@patch("cryoweb.models.truncate_database") |
|
165
|
|
|
def test_import_from_cryoweb_nb( |
|
166
|
|
|
self, my_truncate, my_has_data, my_upload, my_import, my_lock): |
|
167
|
|
|
|
|
168
|
|
|
# NOTE that I'm calling the function directly, without delay |
|
169
|
|
|
# (AsyncResult). I've patched the time consuming task |
|
170
|
|
|
res = self.my_task.run(submission_id=1) |
|
171
|
|
|
|
|
172
|
|
|
# assert database is locked |
|
173
|
|
|
self.assertEqual(res, "Import Cryoweb already running!") |
|
174
|
|
|
|
|
175
|
|
|
# assert that methods were not called |
|
176
|
|
|
self.assertFalse(my_truncate.called) |
|
177
|
|
|
self.assertFalse(my_upload.called) |
|
178
|
|
|
self.assertFalse(my_import.called) |
|
179
|
|
|
self.assertTrue(my_lock.called) |
|
180
|
|
|
|
|
181
|
|
|
# assering zooma not called |
|
182
|
|
|
self.assertFalse(self.mock_annotateall.called) |
|
183
|
|
|
|
cnr-ibba /
IMAGE-InjectTool
