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#!/usr/bin/env python3 |
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# -*- coding: utf-8 -*- |
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""" |
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Created on Mon May 7 16:23:17 2018 |
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@author: Paolo Cozzi <[email protected]> |
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""" |
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from unittest.mock import patch |
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from django.test import TestCase |
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from image_app.models import DictBreed, DictSpecie, DictCountry, DictUberon |
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from common.constants import OBO_URL, GOOD |
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from ..helpers import ( |
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annotate_breed, annotate_specie, annotate_country, annotate_uberon) |
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class TestAnnotateBreed(TestCase): |
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"""A class to test annotate breeds""" |
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fixtures = [ |
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"image_app/dictbreed", |
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"image_app/dictcountry", |
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"image_app/dictspecie" |
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] |
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def setUp(self): |
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# get a breed object |
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self.breed = DictBreed.objects.get(pk=1) |
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# erase attributes |
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self.breed.mapped_breed = None |
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self.breed.mapped_breed_term = None |
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self.breed.confidence = None |
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self.breed.save() |
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@patch("zooma.helpers.use_zooma") |
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def test_annotate_breed(self, my_zooma): |
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"""Testing annotate breed""" |
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my_zooma.return_value = { |
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'type': 'breed', |
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'confidence': 'Good', |
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'text': 'Bentheim Black Pied', |
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'ontologyTerms': '%s/LBO_0000347' % (OBO_URL) |
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} |
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# call my method |
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annotate_breed(self.breed) |
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self.assertTrue(my_zooma.called) |
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# ensure annotation |
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self.breed.refresh_from_db() |
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self.assertEqual(self.breed.mapped_breed, "Bentheim Black Pied") |
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self.assertEqual(self.breed.mapped_breed_term, "LBO_0000347") |
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self.assertEqual(self.breed.confidence, GOOD) |
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class TestAnnotateCountry(TestCase): |
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"""A class to test annotate countries""" |
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fixtures = [ |
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"image_app/dictcountry", |
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] |
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def setUp(self): |
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# get a country object |
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self.country = DictCountry.objects.get(pk=1) |
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# erase attributes |
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self.country.term = None |
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self.country.confidence = None |
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self.country.save() |
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@patch("zooma.helpers.use_zooma") |
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def test_annotate_country(self, my_zooma): |
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"""Testing annotate country""" |
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my_zooma.return_value = { |
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'type': 'country', |
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'confidence': 'Good', |
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'text': 'United Kingdom', |
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'ontologyTerms': '%s/NCIT_C17233' % (OBO_URL)} |
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# call my method |
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annotate_country(self.country) |
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self.assertTrue(my_zooma.called) |
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# ensure annotation |
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self.country.refresh_from_db() |
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self.assertEqual(self.country.label, "United Kingdom") |
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self.assertEqual(self.country.term, "NCIT_C17233") |
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self.assertEqual(self.country.confidence, GOOD) |
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class TestAnnotateSpecie(TestCase): |
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"""A class to test annotate species""" |
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fixtures = [ |
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"image_app/dictspecie", |
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] |
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def setUp(self): |
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# get a specie object |
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self.specie = DictSpecie.objects.get(pk=1) |
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# erase attributes |
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self.specie.term = None |
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self.specie.confidence = None |
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self.specie.save() |
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@patch("zooma.helpers.use_zooma") |
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def test_annotate_specie(self, my_zooma): |
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"""Testing annotate specie""" |
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my_zooma.return_value = { |
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'type': 'specie', |
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'confidence': 'Good', |
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'text': 'Sus scrofa', |
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'ontologyTerms': '%s/NCBITaxon_9823' % (OBO_URL) |
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} |
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# call my method |
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annotate_specie(self.specie) |
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self.assertTrue(my_zooma.called) |
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# ensure annotation |
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self.specie.refresh_from_db() |
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self.assertEqual(self.specie.label, "Sus scrofa") |
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self.assertEqual(self.specie.term, "NCBITaxon_9823") |
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self.assertEqual(self.specie.confidence, GOOD) |
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class TestAnnotateUberon(TestCase): |
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"""A class to test annotate uberon""" |
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fixtures = [ |
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"image_app/dictuberon", |
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] |
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def setUp(self): |
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# get a specie object |
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self.part = DictUberon.objects.get(pk=1) |
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# erase attributes |
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self.part.term = None |
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self.part.confidence = None |
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self.part.save() |
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@patch("zooma.helpers.use_zooma") |
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def test_annotate_uberon(self, my_zooma): |
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"""Testing annotate uberon""" |
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my_zooma.return_value = { |
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'type': 'organism part', |
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'confidence': 'Good', |
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'text': 'semen', |
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'ontologyTerms': '%s/UBERON_0001968' % (OBO_URL) |
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} |
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# call my method |
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annotate_uberon(self.part) |
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self.assertTrue(my_zooma.called) |
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# ensure annotation |
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self.part.refresh_from_db() |
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self.assertEqual(self.part.label, "semen") |
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self.assertEqual(self.part.term, "UBERON_0001968") |
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self.assertEqual(self.part.confidence, GOOD) |
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cnr-ibba /
IMAGE-InjectTool
