common.tests.test_helpers.TestAttributes.test_format_attribute() - Code Metrics - Inspection of ":twisted_rightwards_arrows: Merge pull request #55..." - cnr-ibba/IMAGE-InjectTool - Measure and Improve Code Quality continuously with Scrutinizer

Completed

Push — master ( ba462b...d97c8b )

by Paolo

created 2019-10-01 13:51 UTC

TestAttributes.test_format_attribute() A

↳ Parent: common.tests.test_helpers

Complexity

Conditions

Size

Total Lines	25
Code Lines	16

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	16
dl	0
loc	25
rs	9.6
c	0
b	0
f	0
cc	1
nop	1

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Wed Mar 27 14:35:36 2019

@author: Paolo Cozzi <[email protected]>
"""

from django.test import TestCase
from django.utils.dateparse import parse_date
from django.core import mail
from django.core.validators import validate_email

from .. import constants
from ..helpers import (
    format_attribute, get_admin_emails, image_timedelta, parse_image_timedelta,
    uid2biosample, send_mail_to_admins)


class TestImageTimedelta(TestCase):
    """A class to test common.helpers.image_timedelta functions"""

    def test_years(self):
        t1 = parse_date("2019-03-27")
        t2 = parse_date("2018-03-27")

        years, units = image_timedelta(t1, t2)

        self.assertEqual(years, 1)
        self.assertEqual(units, constants.YEARS)

        with self.assertLogs('common.helpers', level="WARNING") as cm:
            # assert date inversion (returns None)
            years, units = image_timedelta(t2, t1)

        self.assertEqual(years, None)
        self.assertEqual(units, constants.YEARS)
        self.assertEqual(len(cm.output), 1)
        self.assertIn("t2>t1", cm.output[0])

    def test_months(self):
        t1 = parse_date("2019-03-27")
        t2 = parse_date("2019-01-27")

        months, units = image_timedelta(t1, t2)

        self.assertEqual(months, 2)
        self.assertEqual(units, constants.MONTHS)

    def test_days(self):
        t1 = parse_date("2019-03-27")
        t2 = parse_date("2019-03-20")

        days, units = image_timedelta(t1, t2)

        self.assertEqual(days, 7)
        self.assertEqual(units, constants.DAYS)

    def test_unknown_date(self):

        t1 = parse_date("2019-03-20")
        t2 = parse_date("1900-01-01")

        with self.assertLogs('common.helpers', level="WARNING") as cm:
            years, units = image_timedelta(t1, t2)

        self.assertIsNone(years)
        self.assertEqual(units, constants.YEARS)
        self.assertEqual(len(cm.output), 1)
        self.assertIn("Ignoring one date", cm.output[0])

    def test_null_date(self):

        t1 = None
        t2 = parse_date("1900-01-01")

        with self.assertLogs('common.helpers', level="WARNING") as cm:
            years, units = image_timedelta(t1, t2)

        self.assertIsNone(years)
        self.assertEqual(units, constants.YEARS)
        self.assertEqual(len(cm.output), 1)
        self.assertIn("One date is NULL", cm.output[0])

    def test_parse_image_timedelta(self):
        interval = "7 days"
        reference = (7, 2)  # days in common constants

        test = parse_image_timedelta(interval)
        self.assertEqual(reference, test)

        interval = "1 year"
        reference = (1, 5)  # years in common constants

        test = parse_image_timedelta(interval)
        self.assertEqual(reference, test)


class TestAttributes(TestCase):

    def test_format_attribute(self):
        reference = [{
            "value": "54.20944444444445",
            "units": "Decimal degrees"
        }]

        test = format_attribute(
            value="54.20944444444445",
            units="Decimal degrees")

        self.assertEqual(reference, test, msg="testing units")

        # another test
        reference = [{
            "value": "organism",
            "terms": [{
                "url": "%s/OBI_0100026" % (constants.OBO_URL)
            }]
        }]

        test = format_attribute(
            value="organism",
            terms="OBI_0100026")

        self.assertEqual(reference, test, msg="testing terms")

    def test_null(self):
        test = format_attribute(value=None)

        self.assertIsNone(test)


class TestAdminEmails(TestCase):

    def setUp(self):
        # tracking admin emails
        self.admin_emails = get_admin_emails()

    def test_admin_emails(self):
        """Test admin emails are valid"""

        for email in self.admin_emails:
            self.assertIsNone(validate_email(email))

    def test_send_mail_to_admins(self):
        """Test mails sent to admin"""

        # sending mails
        send_mail_to_admins("subject", "body")

        # checking messages
        email = mail.outbox[0]
        self.assertEqual(email.subject, "subject")
        self.assertEqual(email.body, "body")
        self.assertEqual(email.to, self.admin_emails)


class TestUid2Biosample(TestCase):

    def test_uid2biosample(self):
        test = uid2biosample('Sample storage')
        self.assertEqual(test, 'storage')

        test = uid2biosample('Sample storage processing')
        self.assertEqual(test, 'storage_processing')

        test = uid2biosample('Sampling to preparation interval')
        self.assertEqual(test, 'preparation_interval_units')

        test = uid2biosample('Specimen collection protocol')
        self.assertEqual(test, 'protocol')

        test = uid2biosample('meow bark')
        self.assertEqual(test, 'meow_bark')


1		#!/usr/bin/env python3
2		# -- coding: utf-8 --
3		"""
4		Created on Wed Mar 27 14:35:36 2019
5
6		@author: Paolo Cozzi <[email protected]>
7		"""
8
9		from django.test import TestCase
10		from django.utils.dateparse import parse_date
11		from django.core import mail
12		from django.core.validators import validate_email
13
14		from .. import constants
15		from ..helpers import (
16		format_attribute, get_admin_emails, image_timedelta, parse_image_timedelta,
17		uid2biosample, send_mail_to_admins)
18
19
20		class TestImageTimedelta(TestCase):
21		"""A class to test common.helpers.image_timedelta functions"""
22
23		def test_years(self):
24		t1 = parse_date("2019-03-27")
25		t2 = parse_date("2018-03-27")
26
27		years, units = image_timedelta(t1, t2)
28
29		self.assertEqual(years, 1)
30		self.assertEqual(units, constants.YEARS)
31
32		with self.assertLogs('common.helpers', level="WARNING") as cm:
33		# assert date inversion (returns None)
34		years, units = image_timedelta(t2, t1)
35
36		self.assertEqual(years, None)
37		self.assertEqual(units, constants.YEARS)
38		self.assertEqual(len(cm.output), 1)
39		self.assertIn("t2>t1", cm.output[0])
40
41		def test_months(self):
42		t1 = parse_date("2019-03-27")
43		t2 = parse_date("2019-01-27")
44
45		months, units = image_timedelta(t1, t2)
46
47		self.assertEqual(months, 2)
48		self.assertEqual(units, constants.MONTHS)
49
50		def test_days(self):
51		t1 = parse_date("2019-03-27")
52		t2 = parse_date("2019-03-20")
53
54		days, units = image_timedelta(t1, t2)
55
56		self.assertEqual(days, 7)
57		self.assertEqual(units, constants.DAYS)
58
59	View Code Duplication	def test_unknown_date(self):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
60		t1 = parse_date("2019-03-20")
61		t2 = parse_date("1900-01-01")
62
63		with self.assertLogs('common.helpers', level="WARNING") as cm:
64		years, units = image_timedelta(t1, t2)
65
66		self.assertIsNone(years)
67		self.assertEqual(units, constants.YEARS)
68		self.assertEqual(len(cm.output), 1)
69		self.assertIn("Ignoring one date", cm.output[0])
70
71	View Code Duplication	def test_null_date(self):
		0 ignored issues – show Duplication introduced 2019-06-07 17:57 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
72		t1 = None
73		t2 = parse_date("1900-01-01")
74
75		with self.assertLogs('common.helpers', level="WARNING") as cm:
76		years, units = image_timedelta(t1, t2)
77
78		self.assertIsNone(years)
79		self.assertEqual(units, constants.YEARS)
80		self.assertEqual(len(cm.output), 1)
81		self.assertIn("One date is NULL", cm.output[0])
82
83		def test_parse_image_timedelta(self):
84		interval = "7 days"
85		reference = (7, 2) # days in common constants
86
87		test = parse_image_timedelta(interval)
88		self.assertEqual(reference, test)
89
90		interval = "1 year"
91		reference = (1, 5) # years in common constants
92
93		test = parse_image_timedelta(interval)
94		self.assertEqual(reference, test)
95
96
97		class TestAttributes(TestCase):
98
99		def test_format_attribute(self):
100		reference = [{
101		"value": "54.20944444444445",
102		"units": "Decimal degrees"
103		}]
104
105		test = format_attribute(
106		value="54.20944444444445",
107		units="Decimal degrees")
108
109		self.assertEqual(reference, test, msg="testing units")
110
111		# another test
112		reference = [{
113		"value": "organism",
114		"terms": [{
115		"url": "%s/OBI_0100026" % (constants.OBO_URL)
116		}]
117		}]
118
119		test = format_attribute(
120		value="organism",
121		terms="OBI_0100026")
122
123		self.assertEqual(reference, test, msg="testing terms")
124
125		def test_null(self):
126		test = format_attribute(value=None)
127
128		self.assertIsNone(test)
129
130
131		class TestAdminEmails(TestCase):
132
133		def setUp(self):
134		# tracking admin emails
135		self.admin_emails = get_admin_emails()
136
137		def test_admin_emails(self):
138		"""Test admin emails are valid"""
139
140		for email in self.admin_emails:
141		self.assertIsNone(validate_email(email))
142
143		def test_send_mail_to_admins(self):
144		"""Test mails sent to admin"""
145
146		# sending mails
147		send_mail_to_admins("subject", "body")
148
149		# checking messages
150		email = mail.outbox[0]
151		self.assertEqual(email.subject, "subject")
152		self.assertEqual(email.body, "body")
153		self.assertEqual(email.to, self.admin_emails)
154
155
156		class TestUid2Biosample(TestCase):
157
158		def test_uid2biosample(self):
159		test = uid2biosample('Sample storage')
160		self.assertEqual(test, 'storage')
161
162		test = uid2biosample('Sample storage processing')
163		self.assertEqual(test, 'storage_processing')
164
165		test = uid2biosample('Sampling to preparation interval')
166		self.assertEqual(test, 'preparation_interval_units')
167
168		test = uid2biosample('Specimen collection protocol')
169		self.assertEqual(test, 'protocol')
170
171		test = uid2biosample('meow bark')
172		self.assertEqual(test, 'meow_bark')
173

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TestAttributes.test_format_attribute() A

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