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#!/usr/bin/env python3 |
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# -*- coding: utf-8 -*- |
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""" |
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Created on Thu Nov 14 16:19:41 2019 |
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@author: Paolo Cozzi <[email protected]> |
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""" |
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from unittest.mock import patch, Mock |
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from django.core import mail |
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from django.test import TestCase |
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from django.utils import timezone |
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from common.constants import COMPLETED |
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from ..models import Submission |
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from ..tasks import CleanUpTask, SearchOrphanTask |
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from .common import BioSamplesMixin |
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class CleanUpTaskTestCase(TestCase): |
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fixtures = [ |
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"biosample/submission", |
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"uid/dictcountry", |
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"uid/dictrole", |
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"uid/organization", |
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"uid/submission", |
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"uid/user", |
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] |
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def setUp(self): |
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# calling my base setup |
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super().setUp() |
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# fix status for objects |
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Submission.objects.update(status=COMPLETED) |
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# get one objcet and updatete time |
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Submission.objects.filter(pk=1).update(updated_at=timezone.now()) |
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# define my task |
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self.my_task = CleanUpTask() |
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# change lock_id (useful when running test during cron) |
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self.my_task.lock_id = "test-CleanUpTask" |
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def test_clean_up(self): |
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"""Test clean_up task""" |
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for submission in Submission.objects.all(): |
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print(submission, submission.updated_at) |
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# NOTE that I'm calling the function directly, without delay |
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# (AsyncResult). I've patched the time consuming task |
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res = self.my_task.run() |
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# assert a success with data uploading |
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self.assertEqual(res, "success") |
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# assert one object in the database |
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self.assertEqual(Submission.objects.count(), 1) |
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# Test a non blocking instance |
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@patch("redis.lock.Lock.acquire", return_value=False) |
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def test_clean_up_nb(self, my_lock): |
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"""Test CleanUpTask while a lock is present""" |
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res = self.my_task.run() |
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# assert database is locked |
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self.assertEqual(res, "%s already running!" % (self.my_task.name)) |
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# assert two object in the database (fake running) |
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self.assertEqual(Submission.objects.count(), 2) |
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class SearchOrphanTaskTestCase(TestCase): |
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fixtures = [ |
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'biosample/managedteam', |
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'biosample/orphansample', |
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'uid/dictspecie', |
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] |
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def setUp(self): |
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# calling my base setup |
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super().setUp() |
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# ovveride the base patcher method |
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self.asyncio_mock_patcher = patch( |
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'asyncio.new_event_loop') |
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self.asyncio_mock = self.asyncio_mock_patcher.start() |
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# mocking asyncio return value |
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self.run_until = self.asyncio_mock.return_value |
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self.run_until.run_until_complete = Mock() |
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# another patch |
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self.check_samples_patcher = patch( |
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'biosample.tasks.cleanup.check_samples') |
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self.check_samples = self.check_samples_patcher.start() |
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# define my task |
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self.my_task = SearchOrphanTask() |
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# change lock_id (useful when running test during cron) |
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self.my_task.lock_id = "test-SearchOrphanTask" |
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def tearDown(self): |
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# stopping mock objects |
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self.asyncio_mock_patcher.stop() |
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self.check_samples_patcher.stop() |
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# calling base methods |
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super().tearDown() |
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def test_search_orphan(self): |
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"""Test SearchOrphanTask task""" |
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# NOTE that I'm calling the function directly, without delay |
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# (AsyncResult). I've patched the time consuming task |
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res = self.my_task.run() |
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# assert a success with data uploading |
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self.assertEqual(res, "success") |
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# assert function called |
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self.assertEqual(self.asyncio_mock.call_count, 1) |
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self.assertEqual(self.run_until.run_until_complete.call_count, 1) |
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self.assertEqual(self.check_samples.call_count, 1) |
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# test email sent |
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self.assertEqual(len(mail.outbox), 1) |
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# read email |
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email = mail.outbox[0] |
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self.assertEqual( |
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"Some entries in BioSamples are orphan", |
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email.subject) |
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# Test a non blocking instance |
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@patch("redis.lock.Lock.acquire", return_value=False) |
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def test_search_orphan_nb(self, my_lock): |
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"""Test SearchOrphanTask while a lock is present""" |
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res = self.my_task.run() |
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# assert database is locked |
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self.assertEqual(res, "%s already running!" % (self.my_task.name)) |
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# assert function not called |
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self.assertEqual(self.asyncio_mock.call_count, 0) |
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self.assertEqual(self.run_until.run_until_complete.call_count, 0) |
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self.assertEqual(self.check_samples.call_count, 0) |
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cnr-ibba /
IMAGE-InjectTool
