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@@ 165-199 (lines=35) @@
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| 162 |
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sample = OrphanSample.objects.get(pk=2) |
| 163 |
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self.assertEqual(sample.status, ERROR) |
| 164 |
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| 165 |
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def test_patch_orphan_biosamples_with_limit(self): |
| 166 |
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"""test patch_orphan_biosamples command""" |
| 167 |
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| 168 |
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# calling commands |
| 169 |
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args = ["--limit", 1] |
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call_command('patch_orphan_biosamples', *args) |
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| 172 |
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# assert a submission created |
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self.assertTrue(self.my_root.get_team_by_name.called) |
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self.assertTrue(self.my_team.create_submission.called) |
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self.assertTrue(self.new_submission.create_sample.called) |
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self.assertEqual(self.new_submission.create_sample.call_count, 1) |
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# check for an object into database |
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submissions = OrphanSubmission.objects.all() |
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self.assertEqual(len(submissions), 1) |
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# test submission attributes |
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submission = submissions[0] |
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self.assertEqual(submission.usi_submission_name, "new-submission") |
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self.assertEqual(submission.samples_count, 1) |
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self.assertEqual(submission.status, SUBMITTED) |
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# assert sample status |
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sample = OrphanSample.objects.get(pk=1) |
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self.assertEqual(sample.status, SUBMITTED) |
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# assert exactly one sample associated with this submission |
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self.assertEqual(submission.submission_data.count(), 1) |
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self.assertEqual(sample, submission.submission_data.get()) |
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# This was supposed to have a problem in this tests, However this |
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# was not called by our limits |
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sample = OrphanSample.objects.get(pk=2) |
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self.assertEqual(sample.status, READY) |
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class FetchRemovalTestCase(CommandsMixin, BioSamplesMixin, TestCase): |
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@@ 131-163 (lines=33) @@
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| 128 |
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super().tearDown() |
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| 131 |
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def test_patch_orphan_biosamples(self): |
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"""test patch_orphan_biosamples command""" |
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| 134 |
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# calling commands |
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call_command('patch_orphan_biosamples') |
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# assert a submission created |
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self.assertTrue(self.my_root.get_team_by_name.called) |
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self.assertTrue(self.my_team.create_submission.called) |
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self.assertTrue(self.new_submission.create_sample.called) |
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self.assertEqual(self.new_submission.create_sample.call_count, 2) |
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# check for an object into database |
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submissions = OrphanSubmission.objects.all() |
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self.assertEqual(len(submissions), 1) |
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| 147 |
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# test submission attributes |
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submission = submissions[0] |
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self.assertEqual(submission.usi_submission_name, "new-submission") |
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self.assertEqual(submission.samples_count, 1) |
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self.assertEqual(submission.status, SUBMITTED) |
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| 153 |
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# assert sample status |
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sample = OrphanSample.objects.get(pk=1) |
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self.assertEqual(sample.status, SUBMITTED) |
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# assert exactly one sample associated with this submission |
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self.assertEqual(submission.submission_data.count(), 1) |
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self.assertEqual(sample, submission.submission_data.get()) |
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# This was supposed to have a problem in this tests |
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sample = OrphanSample.objects.get(pk=2) |
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self.assertEqual(sample.status, ERROR) |
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| 165 |
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def test_patch_orphan_biosamples_with_limit(self): |
| 166 |
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"""test patch_orphan_biosamples command""" |
cnr-ibba /
IMAGE-InjectTool
