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Branch — master (cebbe9)
by Chad
34:07 queued 19:22
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test_imagej.test_run_tracking()   A

↳ Parent: test_imagej

Complexity

Conditions 3

Size

Total Lines 9
Code Lines 8

Duplication

Lines 0
Ratio 0 %

Importance

Changes 0
Metric Value
eloc 8
dl 0
loc 9
rs 9.6666
c 0
b 0
f 0
cc 3
nop 0
1 
import os
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import pytest
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import sys
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import diff_classifier.imagej as ij
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import os.path as op
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import tempfile
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from diff_classifier.utils import csv_to_pd
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is_travis = "CI" in os.environ.keys()

            


            
                                                                                                            
                            
            
                                    
            
            

                
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is_mac = sys.platform == "darwin"

            


            
                                                                                                            
                            
            
                                    
            
            

                
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@pytest.mark.skipif(is_travis, reason="We're running this on Travis")

            


            
                                                        
            
                                    
            
            

                
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@pytest.mark.skipif(is_mac, reason="This doesn't work on Macs yet")

            


            
                                                        
            
                                    
            
            

                
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def test_run_tracking():

            


            
                                                        
            
                                    
            
            

                
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    tf  = tempfile.NamedTemporaryFile(suffix='.csv')

            


            
                                                        
            
                                    
            
            

                
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    ij.track('http://fiji.sc/samples/FakeTracks.tif', tf.name)

            


            
                                                        
            
                                    
            
            

                
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    assert op.exists(tf.name)

            


            
                                                        
            
                                    
            
            

                
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    df = csv_to_pd(tf.name)

            


            
                                                        
            
                                    
            
            

                
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    assert df.shape == (84, 8)

            


            
                                                        
            
                                    
            
            

                
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