cnn_visualizer.show_observation_matrix() - Code Metrics - Inspection of "[pyclustering.nnet] Added prototype of chaotic neu..." - annoviko/pyclustering - Measure and Improve Code Quality continuously with Scrutinizer

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by Andrei

created 2016-06-21 12:47 UTC

cnn_visualizer.show_observation_matrix() A

↳ Parent: cnn_visualizer

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cc	1
dl	0
loc	4
rs	10
c	0
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"""!

@brief Chaotic Neural Network
@details Based on article description:
         - 

@authors Andrei Novikov ([email protected])
@date 2014-2016
@copyright GNU Public License

@cond GNU_PUBLIC_LICENSE
    PyClustering is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
    
    PyClustering is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
    
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
@endcond

"""

import math;

import random;

from enum import IntEnum;

from pyclustering.utils import euclidean_distance_sqrt, average_neighbor_distance, heaviside, draw_dynamics;


class type_conn(IntEnum):
    """!
    @brief Enumeration of connection types for Chaotic Neural Network.
    
    @see cnn_network
    
    """
    
    ## All oscillators have connection with each other.
    ALL_TO_ALL  = 0,
    
    ## Connections between oscillators are created in line with Delaunay triangulation.
    TRIANGULATION_DELAUNAY = 1,


class cnn_dynamic:
    def __init__(self, output = [], time = []):
# Bad:
# If array_param is modified inside the function, the next invocation will
# receive the modified object.
def some_function(array_param=[]):
    # ...

# Better: Create an array on each invocation
def some_function(array_param=None):
    array_param = array_param or []
    # ...
        self.output = output;
        self.time = time;


    def __len__(self):
        return len(self.output);


    def allocate_observation_matrix(self):
        number_neurons = len(self.output[0]);
        observation_matrix = [];
        
        for iteration in range(len(self.output)):
            obervation_column = [];
            for index_neuron in range(number_neurons):
                obervation_column.append(heaviside(self.output[iteration][index_neuron]));
            
            observation_matrix.append(obervation_column);
        
        return observation_matrix;


class cnn_visualizer:
    @staticmethod
    def show_output_dynamic(cnn_output_dynamic):
        draw_dynamics(cnn_output_dynamic.time, cnn_output_dynamic.output, x_title = "t", y_title = "x");
    
    @staticmethod
    def show_observation_matrix(cnn_output_dynamic):
        observation_matrix = cnn_output_dynamic.allocate_observation_matrix();
        draw_dynamics(cnn_output_dynamic.time, observation_matrix, x_title = "t", y_title = "outputs");


class cnn_network:
    def __init__(self, num_osc, conn_type = type_conn.ALL_TO_ALL, amount_neighbors = 3):
        self.__num_osc = num_osc;
        self.__conn_type = conn_type;
        self.__amount_neighbors = amount_neighbors;
        
        self.__average_distance = 0.0;
        self.__weights = None;
        self.__weights_summary = None;
        
        self.__output = [ random.random() for _ in range(num_osc) ];
    
    
    def __len__(self):
        return self.__num_osc;
    
    
    def simulate(self, steps, stimulus):
        self.__create_weights(stimulus);
        
        dynamic = cnn_dynamic([], []);
        dynamic.output.append(self.__output);
        dynamic.time.append(0);
        
        for step in range(1, steps, 1):
            self.__output = self.__calculate_states();
            
            dynamic.output.append(self.__output);
            dynamic.time.append(step);
            
        return dynamic;
    
    
    def __calculate_states(self):
        output = [ 0.0 for _ in range(self.__num_osc) ];
        
        for i in range(self.__num_osc):
            output[i] = self.__neuron_evolution(i);
        
        return output;
    
    
    def __neuron_evolution(self, index):
        value = 0.0;
        state = 1.0 - 2.0 * self.__output[index];
        
        for index in range(self.__num_osc):
            value += self.__weights[index][index] * state;
        
        return value / self.__weights_summary[index];
    
    
    def __create_weights(self, stimulus):
        self.__average_distance = average_neighbor_distance(stimulus, self.__amount_neighbors);
        
        self.__weights = [ [ 0.0 for _ in range(len(stimulus)) ] for _ in range(len(stimulus)) ];
        self.__weights_summary = [ 0.0 for _ in range(self.__num_osc) ];
        
        if (self.__conn_type == type_conn.ALL_TO_ALL):
            self.__create_weights_all_to_all(stimulus);
        
        elif (self.__conn_type == type_conn.TRIANGULATION_DELAUNAY):
            self.__create_weights_delaunay_triangulation(stimulus);
    
    
    def __create_weights_all_to_all(self, stimulus):
        for i in range(len(stimulus)):
            for j in range(i + 1, len(stimulus)):
                weight = self.__calculate_weight(stimulus[i], stimulus[j]);
                
                self.__weights[i][j] = weight;
                self.__weights[j][i] = weight;
                
                self.__weights_summary[i] += weight;
                self.__weights_summary[j] += weight;
    
    
    def __create_weights_delaunay_triangulation(self, stimulus):
        pass;
    
    
    def __calculate_weight(self, oscillator_location1, oscillator_location2):
        distance = euclidean_distance_sqrt(oscillator_location1, oscillator_location2);
        return math.exp(-distance / (2.0 * self.__amount_neighbors));


1			"""!
2
3			@brief Chaotic Neural Network
4			@details Based on article description:
5			-
6
7			@authors Andrei Novikov ([email protected])
8			@date 2014-2016
9			@copyright GNU Public License
10
11			@cond GNU_PUBLIC_LICENSE
12			PyClustering is free software: you can redistribute it and/or modify
13			it under the terms of the GNU General Public License as published by
14			the Free Software Foundation, either version 3 of the License, or
15			(at your option) any later version.
16
17			PyClustering is distributed in the hope that it will be useful,
18			but WITHOUT ANY WARRANTY; without even the implied warranty of
19			MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
20			GNU General Public License for more details.
21
22			You should have received a copy of the GNU General Public License
23			along with this program. If not, see <http://www.gnu.org/licenses/>.
24			@endcond
25
26			"""
27
28			import math;
29
30			import random;
31
32			from enum import IntEnum;
33
34			from pyclustering.utils import euclidean_distance_sqrt, average_neighbor_distance, heaviside, draw_dynamics;
35
36
37			class type_conn(IntEnum):
38			"""!
39			@brief Enumeration of connection types for Chaotic Neural Network.
40
41			@see cnn_network
42
43			"""
44
45			## All oscillators have connection with each other.
46			ALL_TO_ALL = 0,
47
48			## Connections between oscillators are created in line with Delaunay triangulation.
49			TRIANGULATION_DELAUNAY = 1,
50
51
52			class cnn_dynamic:
53			def __init__(self, output = [], time = []):
			0 ignored issues – show Bug Best Practice introduced 2016-06-21 12:49 UTC by Report Bug Copy Issue Report The default value `[]` might cause unintended side-effects. Objects as default values are only created once in Python and not on each invocation of the function. If the default object is modified, this modification is carried over to the next invocation of the method. # Bad: # If array_param is modified inside the function, the next invocation will # receive the modified object. def some_function(array_param=[]): # ... # Better: Create an array on each invocation def some_function(array_param=None): array_param = array_param or [] # ... Loading history...
54			self.output = output;
55			self.time = time;
56
57
58			def __len__(self):
59			return len(self.output);
60
61
62			def allocate_observation_matrix(self):
63			number_neurons = len(self.output[0]);
64			observation_matrix = [];
65
66			for iteration in range(len(self.output)):
67			obervation_column = [];
68			for index_neuron in range(number_neurons):
69			obervation_column.append(heaviside(self.output[iteration][index_neuron]));
70
71			observation_matrix.append(obervation_column);
72
73			return observation_matrix;
74
75
76			class cnn_visualizer:
77			@staticmethod
78			def show_output_dynamic(cnn_output_dynamic):
79			draw_dynamics(cnn_output_dynamic.time, cnn_output_dynamic.output, x_title = "t", y_title = "x");
80
81			@staticmethod
82			def show_observation_matrix(cnn_output_dynamic):
83			observation_matrix = cnn_output_dynamic.allocate_observation_matrix();
84			draw_dynamics(cnn_output_dynamic.time, observation_matrix, x_title = "t", y_title = "outputs");
85
86
87			class cnn_network:
88			def __init__(self, num_osc, conn_type = type_conn.ALL_TO_ALL, amount_neighbors = 3):
89			self.__num_osc = num_osc;
90			self.__conn_type = conn_type;
91			self.__amount_neighbors = amount_neighbors;
92
93			self.__average_distance = 0.0;
94			self.__weights = None;
95			self.__weights_summary = None;
96
97			self.__output = [ random.random() for _ in range(num_osc) ];
98
99
100			def __len__(self):
101			return self.__num_osc;
102
103
104			def simulate(self, steps, stimulus):
105			self.__create_weights(stimulus);
106
107			dynamic = cnn_dynamic([], []);
108			dynamic.output.append(self.__output);
109			dynamic.time.append(0);
110
111			for step in range(1, steps, 1):
112			self.__output = self.__calculate_states();
113
114			dynamic.output.append(self.__output);
115			dynamic.time.append(step);
116
117			return dynamic;
118
119
120			def __calculate_states(self):
121			output = [ 0.0 for _ in range(self.__num_osc) ];
122
123			for i in range(self.__num_osc):
124			output[i] = self.__neuron_evolution(i);
125
126			return output;
127
128
129			def __neuron_evolution(self, index):
130			value = 0.0;
131			state = 1.0 - 2.0 * self.__output[index];
132
133			for index in range(self.__num_osc):
134			value += self.__weights[index][index] * state;
135
136			return value / self.__weights_summary[index];
137
138
139			def __create_weights(self, stimulus):
140			self.__average_distance = average_neighbor_distance(stimulus, self.__amount_neighbors);
141
142			self.__weights = [ [ 0.0 for _ in range(len(stimulus)) ] for _ in range(len(stimulus)) ];
143			self.__weights_summary = [ 0.0 for _ in range(self.__num_osc) ];
144
145			if (self.__conn_type == type_conn.ALL_TO_ALL):
146			self.__create_weights_all_to_all(stimulus);
147
148			elif (self.__conn_type == type_conn.TRIANGULATION_DELAUNAY):
149			self.__create_weights_delaunay_triangulation(stimulus);
150
151
152			def __create_weights_all_to_all(self, stimulus):
153			for i in range(len(stimulus)):
154			for j in range(i + 1, len(stimulus)):
155			weight = self.__calculate_weight(stimulus[i], stimulus[j]);
156
157			self.__weights[i][j] = weight;
158			self.__weights[j][i] = weight;
159
160			self.__weights_summary[i] += weight;
161			self.__weights_summary[j] += weight;
162
163
164			def __create_weights_delaunay_triangulation(self, stimulus):
165			pass;
166
167
168			def __calculate_weight(self, oscillator_location1, oscillator_location2):
169			distance = euclidean_distance_sqrt(oscillator_location1, oscillator_location2);
170			return math.exp(-distance / (2.0 * self.__amount_neighbors));
171

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cnn_visualizer.show_observation_matrix() A

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