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# -*- coding: utf-8 -*- |
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# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- |
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# vi: set ft=python sts=4 ts=4 sw=4 et: |
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""" |
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Crumb class: the smart path model class. |
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""" |
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import os.path as op |
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from copy import deepcopy |
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from collections import OrderedDict, Mapping, Sequence |
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from pathlib import Path |
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from functools import partial |
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from six import string_types |
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from .utils import remove_duplicates, list_children |
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from ._utils import (_get_path, _arg_name, |
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_is_crumb_arg, _replace, |
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_split_exists, _split, |
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_touch, has_crumbs, is_valid, |
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#_arg_format, |
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) |
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class Crumb(object): |
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""" The crumb path model class. |
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Parameters |
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---------- |
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crumb_path: str |
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A file or folder path with crumb arguments. See Examples. |
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ignore_list: sequence of str |
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A list of `fnmatch` patterns of filenames to be ignored. |
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Examples |
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-------- |
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>>> crumb = Crumb("{base_dir}/raw/{subject_id}/{session_id}/{modality}/{image}") |
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>>> cr = Crumb(op.join(op.expanduser('~'), '{user_folder}')) |
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""" |
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_arg_start_sym = '{' |
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_arg_end_sym = '}' |
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# specify partial functions from _utils with _arg_start_sym and _arg_end_sym |
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# everything would be much simpler if I hardcoded these symbols but I still |
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# feel that this flexibility is nice to have. |
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# _arg_format = partial(_arg_format, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_is_crumb_arg = partial(_is_crumb_arg, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_arg_name = partial(_arg_name, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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is_valid = partial(is_valid, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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has_crumbs = partial(has_crumbs, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_replace = partial(_replace, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_split = partial(_split, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_touch = partial(_touch, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_split_exists = partial(_split_exists, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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def __init__(self, crumb_path, ignore_list=()): |
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self._path = _get_path(crumb_path) |
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self._argidx = OrderedDict() |
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self._ignore = ignore_list |
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self._update() |
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@property |
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def path(self): |
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"""Return the current crumb path string.""" |
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return self._path |
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@path.setter |
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def path(self, value): |
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""" Set the current crumb path string and updates the internal members. |
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Parameters |
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---------- |
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value: str |
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A file or folder path with crumb arguments. See Examples in class docstring. |
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""" |
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self._path = value |
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self._update() |
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def _check(self): |
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if not self.is_valid(self._path): |
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raise ValueError("The current crumb path has errors, got {}.".format(self.path)) |
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def _update(self): |
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""" Clean up, parse the current crumb path and fill the internal |
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members for functioning.""" |
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self._clean() |
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self._check() |
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self._set_argidx() |
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# self._set_replace_func() |
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def _clean(self): |
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""" Clean up the private utility members, i.e., _argidx. """ |
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self._argidx = OrderedDict() |
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@classmethod |
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def copy(cls, crumb): |
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""" Return a deep copy of the given `crumb`. |
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Parameters |
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---------- |
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crumb: str or Crumb |
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Returns |
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------- |
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copy: Crumb |
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""" |
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if isinstance(crumb, cls): |
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return cls(crumb._path, ignore_list=crumb._ignore) |
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elif isinstance(crumb, string_types): |
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return cls.from_path(crumb) |
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else: |
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raise TypeError("Expected a Crumb or a str to copy, got {}.".format(type(crumb))) |
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def _set_argidx(self): |
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""" Initialize the self._argidx dict. It holds arg_name -> index. |
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The index is the position in the whole `_path.split(op.sep)` where each argument is. |
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""" |
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fs = self._path_split() |
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for idx, f in enumerate(fs): |
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if self._is_crumb_arg(f): |
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self._argidx[self._arg_name(f)] = idx |
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def _find_arg(self, arg_name): |
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""" Return the index in the current path of the crumb |
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argument with name `arg_name`. |
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""" |
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return self._argidx.get(arg_name, -1) |
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def isabs(self): |
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""" Return True if the current crumb path has an |
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absolute path, False otherwise. |
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This means that if it is valid and does not start with a `op.sep` character |
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or hard disk letter. |
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""" |
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if not self.is_valid(self._path): |
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raise ValueError("The given crumb path has errors, got {}.".format(self.path)) |
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subp = self._path.split(self._arg_start_sym)[0] |
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return op.isabs(subp) |
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def abspath(self, first_is_basedir=False): |
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""" Return a copy of `self` with an absolute crumb path. |
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Add as prefix the absolute path to the current directory if the current |
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crumb is not absolute. |
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Parameters |
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---------- |
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first_is_basedir: bool |
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If True and the current crumb path starts with a crumb argument and first_is_basedir, |
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the first argument will be replaced by the absolute path to the current dir, |
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otherwise the absolute path to the current dir will be added as a prefix. |
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Returns |
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------- |
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abs_crumb: Crumb |
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""" |
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if not self.is_valid(self._path): |
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raise ValueError("The given crumb path has errors, got {}.".format(self.path)) |
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if self.isabs(): |
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return deepcopy(self) |
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return self.copy(self._abspath(first_is_basedir=first_is_basedir)) |
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def _path_split(self): |
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return self._path.split(op.sep) |
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def _abspath(self, first_is_basedir=False): |
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""" Return the absolute path of the current crumb path. |
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Parameters |
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---------- |
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first_is_basedir: bool |
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If True and the current crumb path starts with a crumb argument and first_is_basedir, |
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the first argument will be replaced by the absolute path to the current dir, |
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otherwise the absolute path to the current dir will be added as a prefix. |
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Returns |
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------- |
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abspath: str |
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""" |
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if not self.has_crumbs(self._path): |
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return op.abspath(self._path) |
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splt = self._path_split() |
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path = [] |
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if self._is_crumb_arg(splt[0]): |
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path.append(op.abspath(op.curdir)) |
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if not first_is_basedir: |
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path.append(splt[0]) |
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if splt[1:]: |
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path.extend(splt[1:]) |
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return op.sep.join(path) |
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def split(self): |
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""" Return a list of sub-strings of the current crumb path where the |
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path parts are separated from the crumb arguments. |
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Returns |
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------- |
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crumbs: list of str |
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""" |
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return self._split(self._path) |
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@classmethod |
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def from_path(cls, crumb_path): |
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""" Create an instance of Crumb or pathlib.Path out of `crumb_path`. |
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It will return a Crumb if `crumb_path` has crumbs or |
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Parameters |
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---------- |
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val: str, Crumb or pathlib.Path |
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Returns |
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------- |
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path: Crumb or pathlib.Path |
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""" |
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if isinstance(crumb_path, (cls, Path)): |
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return crumb_path |
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if isinstance(crumb_path, string_types): |
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if cls.has_crumbs(crumb_path): |
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return cls(crumb_path) |
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else: |
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return Path(crumb_path) |
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else: |
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raise TypeError("Expected a `val` to be a `str`, got {}.".format(type(crumb_path))) |
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# def _set_replace_func(self): |
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# """ Set the fastest replace algorithm depending on how |
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# many arguments the path has.""" |
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# self._replace = self._replace2 |
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# if len(self._argidx) > 5: |
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# self._replace = self._replace1 |
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# def _replace2(self, start_sym='{', end_sym='}', **kwargs): |
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# |
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# if start_sym != '{' or end_sym != '}': |
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# raise NotImplementedError |
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# |
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# if not kwargs: |
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# return self._path |
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# |
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# args = {v: self._arg_format(v) for v in self._argidx} |
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# |
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# for k in kwargs: |
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# if k not in args: |
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# raise KeyError("Could not find argument {}" |
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# " in `path` {}.".format(k, self._path)) |
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# |
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# args[k] = kwargs[k] |
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# |
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# return self._path.format_map(args) |
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def _lastarg(self): |
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""" Return the name and idx of the last argument.""" |
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for arg, idx in reversed(list(self._argidx.items())): |
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return arg, idx |
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def _firstarg(self): |
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""" Return the name and idx of the first argument.""" |
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for arg, idx in self._argidx.items(): |
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return arg, idx |
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def _is_firstarg(self, arg_name): |
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""" Return True if `arg_name` is the first argument.""" |
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# Take into account that self._argidx is OrderedDict |
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return arg_name == self._firstarg()[0] |
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def _arg_values(self, arg_name, arg_values=None): |
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""" Return the existing values in the file system for the crumb argument |
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with name `arg_name`. |
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The `arg_values` must be a sequence with the tuples with valid values of the dependent |
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(previous in the path) crumb arguments. |
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The format of `arg_values` work in such a way that `self._path.format(dict(arg_values[0]))` |
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would give me a valid path or crumb. |
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Parameters |
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---------- |
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arg_name: str |
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arg_values: list of tuples |
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Returns |
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------- |
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vals: list of tuples |
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Raises |
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------ |
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ValueError: if `arg_values` is None and `arg_name` is not the |
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first crumb argument in self._path |
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IOError: if this crosses to any path that is non-existing. |
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""" |
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if arg_values is None and not self._is_firstarg(arg_name): |
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raise ValueError("Cannot get the list of values for {} if" |
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" the previous arguments are not filled" |
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" in `paths`.".format(arg_name)) |
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aidx = self._find_arg(arg_name) |
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# check if the path is absolute, do it absolute |
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apath = self._abspath() |
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splt = apath.split(op.sep) |
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if aidx == len(splt) - 1: # this means we have to list files too |
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just_dirs = False |
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else: # this means we have to list folders |
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just_dirs = True |
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vals = [] |
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if arg_values is None: |
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base = op.sep.join(splt[:aidx]) |
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vals = [[(arg_name, val)] for val in list_children(base, just_dirs=just_dirs, ignore=self._ignore)] |
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else: |
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for aval in arg_values: |
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# create the part of the crumb path that is already specified |
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path = self._split(self._replace(self._path, **dict(aval)))[0] |
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# list the children of `path` |
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subpaths = list_children(path, just_dirs=just_dirs, ignore=self._ignore) |
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# extend `val` tuples with the new list of values for `aval` |
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vals.extend([aval + [(arg_name, sp)] for sp in subpaths]) |
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return vals |
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def replace(self, **kwargs): |
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""" Return a copy of self with the crumb arguments in |
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`kwargs` replaced by its values. |
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Parameters |
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---------- |
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kwargs: strings |
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Returns |
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------- |
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crumb: |
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""" |
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for arg_name in kwargs: |
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if arg_name not in self._argidx: |
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raise KeyError("Expected `arg_name` to be one of ({})," |
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" got {}.".format(list(self._argidx), arg_name)) |
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cr = self.copy(self) |
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cr._path = cr._replace(self._path, **kwargs) |
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return Crumb.from_path(cr._path) |
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def _arg_deps(self, arg_name): |
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""" Return a subdict of `self._argidx` with the |
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values from the crumb arguments that come before |
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`arg_name` in the crumb path. |
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Parameters |
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|
|
|
---------- |
354
|
|
|
arg_name: str |
355
|
|
|
|
356
|
|
|
Returns |
357
|
|
|
------- |
358
|
|
|
arg_deps: Mapping[str, int] |
359
|
|
|
""" |
360
|
|
|
argidx = self._find_arg(arg_name) |
361
|
|
|
return OrderedDict([(arg, idx) for arg, idx in self._argidx.items() if idx <= argidx]) |
362
|
|
|
|
363
|
|
|
def values_map(self, arg_name, check_exists=False): |
364
|
|
|
""" Return a list of tuples of crumb arguments with their values. |
365
|
|
|
|
366
|
|
|
Parameters |
367
|
|
|
---------- |
368
|
|
|
arg_name: str |
369
|
|
|
|
370
|
|
|
check_exists: bool |
371
|
|
|
|
372
|
|
|
Returns |
373
|
|
|
------- |
374
|
|
|
values_map: list of lists of 2-tuples |
375
|
|
|
""" |
376
|
|
|
arg_deps = self._arg_deps(arg_name) |
377
|
|
|
values_map = None |
378
|
|
|
for arg in arg_deps: |
379
|
|
|
values_map = self._arg_values(arg, values_map) |
380
|
|
|
|
381
|
|
|
if check_exists: |
382
|
|
|
paths = [self.from_path(path) for path in self._build_paths(values_map)] |
383
|
|
|
values_map_checked = [args for args, path in zip(values_map, paths) if path.exists()] |
384
|
|
|
else: |
385
|
|
|
values_map_checked = values_map |
386
|
|
|
|
387
|
|
|
return values_map_checked |
388
|
|
|
|
389
|
|
|
def _build_paths(self, values_map): |
390
|
|
|
""" Return a list of paths from each tuple of args from `values_map` |
391
|
|
|
Parameters |
392
|
|
|
---------- |
393
|
|
|
values_map: list of sequences of 2-tuple |
394
|
|
|
|
395
|
|
|
Returns |
396
|
|
|
------- |
397
|
|
|
paths: list of str |
398
|
|
|
""" |
399
|
|
|
return [self._replace(self._path, **dict(val)) for val in values_map] |
400
|
|
|
|
401
|
|
|
def ls(self, arg_name, fullpath=True, rm_dups=False, make_crumbs=True, check_exists=False): |
402
|
|
|
""" |
403
|
|
|
Return the list of values for the argument crumb `arg_name`. |
404
|
|
|
This will also unfold any other argument crumb that appears before in the |
405
|
|
|
path. |
406
|
|
|
Parameters |
407
|
|
|
---------- |
408
|
|
|
arg_name: str |
409
|
|
|
Name of the argument crumb to be unfolded. |
410
|
|
|
|
411
|
|
|
fullpath: bool |
412
|
|
|
If True will build the full path of the crumb path, will also append |
413
|
|
|
the rest of crumbs not unfolded. |
414
|
|
|
If False will only return the values for the argument with name |
415
|
|
|
`arg_name`. |
416
|
|
|
|
417
|
|
|
rm_dups: bool |
418
|
|
|
If True will remove and sort the duplicate values from the result. |
419
|
|
|
Otherwise it will leave it as it is. |
420
|
|
|
|
421
|
|
|
make_crumbs: bool |
422
|
|
|
If `fullpath` and `make_crumbs` is True will create a Crumb or a pathlib.Path |
423
|
|
|
for each element of the result. This will depende if the result item still has |
424
|
|
|
crumb arguments or not. |
425
|
|
|
|
426
|
|
|
check_exists: bool |
427
|
|
|
If True will return only str, Crumb or Path if it exists |
428
|
|
|
in the file path, otherwise it may create file paths |
429
|
|
|
that don't have to exist. |
430
|
|
|
|
431
|
|
|
Returns |
432
|
|
|
------- |
433
|
|
|
values: list of str or Crumb |
434
|
|
|
|
435
|
|
|
Examples |
436
|
|
|
-------- |
437
|
|
|
>>> cr = Crumb(op.join(op.expanduser('~'), '{user_folder}')) |
438
|
|
|
>>> user_folders = cr.ls('user_folder', fullpath=True, rm_dups=True, make_crumbs=True) |
439
|
|
|
""" |
440
|
|
|
if arg_name not in self._argidx: |
441
|
|
|
raise ValueError("Expected `arg_name` to be one of ({})," |
442
|
|
|
" got {}.".format(list(self._argidx), arg_name)) |
443
|
|
|
|
444
|
|
|
# if the first chunk of the path is a parameter, I am not interested in this (for now) |
445
|
|
|
if self._path.startswith(self._arg_start_sym): |
446
|
|
|
raise NotImplementedError("Can't list paths that starts" |
447
|
|
|
" with an argument.") |
448
|
|
|
|
449
|
|
|
if make_crumbs and not fullpath: |
450
|
|
|
raise ValueError("`make_crumbs` can only work if `fullpath` is also True.") |
451
|
|
|
|
452
|
|
|
values_map = self.values_map(arg_name, check_exists=check_exists) |
453
|
|
|
|
454
|
|
|
if not fullpath and not make_crumbs: |
455
|
|
|
paths = [dict(val)[arg_name] for val in values_map] |
456
|
|
|
else: |
457
|
|
|
paths = self._build_paths(values_map) |
458
|
|
|
|
459
|
|
|
if rm_dups: |
460
|
|
|
paths = remove_duplicates(paths) |
461
|
|
|
|
462
|
|
|
if fullpath and make_crumbs: |
463
|
|
|
paths = sorted([self.from_path(path) for path in paths]) |
464
|
|
|
|
465
|
|
|
return paths |
466
|
|
|
|
467
|
|
|
def _remaining_deps(self, arg_names): |
468
|
|
|
""" Return the name of the arguments that are dependencies of `arg_names`. |
469
|
|
|
Parameters |
470
|
|
|
---------- |
471
|
|
|
arg_names: Sequence[str] |
472
|
|
|
|
473
|
|
|
Returns |
474
|
|
|
------- |
475
|
|
|
rem_deps: Sequence[str] |
476
|
|
|
""" |
477
|
|
|
started = False |
478
|
|
|
rem_deps = [] |
479
|
|
|
for an in reversed(list(self._argidx.keys())): # take into account that argidx is ordered |
480
|
|
|
if an in arg_names: |
481
|
|
|
started = True |
482
|
|
|
else: |
483
|
|
|
if started: |
484
|
|
|
rem_deps.append(an) |
485
|
|
|
|
486
|
|
|
return rem_deps |
487
|
|
|
|
488
|
|
|
def touch(self): |
489
|
|
|
""" Create a leaf directory and all intermediate ones |
490
|
|
|
using the non crumbed part of `crumb_path`. |
491
|
|
|
If the target directory already exists, raise an IOError |
492
|
|
|
if exist_ok is False. Otherwise no exception is raised. |
493
|
|
|
Parameters |
494
|
|
|
---------- |
495
|
|
|
crumb_path: str |
496
|
|
|
|
497
|
|
|
exist_ok: bool |
498
|
|
|
Default = True |
499
|
|
|
|
500
|
|
|
Returns |
501
|
|
|
------- |
502
|
|
|
nupath: str |
503
|
|
|
The new path created. |
504
|
|
|
""" |
505
|
|
|
return self._touch(self._path) |
506
|
|
|
|
507
|
|
|
def joinpath(self, suffix): |
508
|
|
|
""" Return a copy of the current crumb with the `suffix` path appended. |
509
|
|
|
If suffix has crumb arguments, the whole crumb will be updated. |
510
|
|
|
Parameters |
511
|
|
|
---------- |
512
|
|
|
suffix: str |
513
|
|
|
|
514
|
|
|
Returns |
515
|
|
|
------- |
516
|
|
|
cr: Crumb |
517
|
|
|
""" |
518
|
|
|
return Crumb(op.join(self._path, suffix)) |
519
|
|
|
|
520
|
|
|
def exists(self): |
521
|
|
|
""" Return True if the current crumb path is a possibly existing path, |
522
|
|
|
False otherwise. |
523
|
|
|
Returns |
524
|
|
|
------- |
525
|
|
|
exists: bool |
526
|
|
|
""" |
527
|
|
|
if not op.exists(self.split()[0]): |
528
|
|
|
return False |
529
|
|
|
|
530
|
|
|
last, _ = self._lastarg() |
531
|
|
|
paths = self.ls(last, |
532
|
|
|
fullpath = True, |
533
|
|
|
make_crumbs = False, |
534
|
|
|
rm_dups = True, |
535
|
|
|
check_exists = False) |
536
|
|
|
|
537
|
|
|
return all([self._split_exists(lp) for lp in paths]) |
538
|
|
|
|
539
|
|
|
def has_files(self): |
540
|
|
|
""" Return True if the current crumb path has any file in its |
541
|
|
|
possible paths. |
542
|
|
|
Returns |
543
|
|
|
------- |
544
|
|
|
has_files: bool |
545
|
|
|
""" |
546
|
|
|
if not op.exists(self.split()[0]): |
547
|
|
|
return False |
548
|
|
|
|
549
|
|
|
last, _ = self._lastarg() |
550
|
|
|
paths = self.ls(last, |
551
|
|
|
fullpath = True, |
552
|
|
|
make_crumbs = True, |
553
|
|
|
rm_dups = False, |
554
|
|
|
check_exists = True) |
555
|
|
|
|
556
|
|
|
return any([op.isfile(str(lp)) for lp in paths]) |
557
|
|
|
|
558
|
|
|
def unfold(self): |
559
|
|
|
""" Return a list of all the existing paths until the last crumb argument. |
560
|
|
|
Returns |
561
|
|
|
------- |
562
|
|
|
paths: list of pathlib.Path |
563
|
|
|
""" |
564
|
|
|
return self.ls(self._lastarg()[0], |
565
|
|
|
fullpath = True, |
566
|
|
|
rm_dups = True, |
567
|
|
|
make_crumbs = True, |
568
|
|
|
check_exists= True) |
569
|
|
|
|
570
|
|
|
def __getitem__(self, arg_name): |
571
|
|
|
""" Return the existing values of the crumb argument `arg_name` |
572
|
|
|
without removing duplicates. |
573
|
|
|
Parameters |
574
|
|
|
---------- |
575
|
|
|
arg_name: str |
576
|
|
|
|
577
|
|
|
Returns |
578
|
|
|
------- |
579
|
|
|
values: list of str |
580
|
|
|
""" |
581
|
|
|
return self.ls(arg_name, |
582
|
|
|
fullpath = False, |
583
|
|
|
rm_dups = False, |
584
|
|
|
make_crumbs = False, |
585
|
|
|
check_exists= True) |
586
|
|
|
|
587
|
|
|
def __setitem__(self, key, value): |
588
|
|
|
if key not in self._argidx: |
589
|
|
|
raise KeyError("Expected `arg_name` to be one of ({})," |
590
|
|
|
" got {}.".format(list(self._argidx), key)) |
591
|
|
|
|
592
|
|
|
self._path = self._replace(self._path, **{key: value}) |
593
|
|
|
self._update() |
594
|
|
|
|
595
|
|
|
def __ge__(self, other): |
596
|
|
|
return self._path >= str(other) |
597
|
|
|
|
598
|
|
|
def __le__(self, other): |
599
|
|
|
return self._path <= str(other) |
600
|
|
|
|
601
|
|
|
def __gt__(self, other): |
602
|
|
|
return self._path > str(other) |
603
|
|
|
|
604
|
|
|
def __lt__(self, other): |
605
|
|
|
return self._path < str(other) |
606
|
|
|
|
607
|
|
|
def __hash__(self): |
608
|
|
|
return self._path.__hash__() |
609
|
|
|
|
610
|
|
|
def __contains__(self, item): |
611
|
|
|
return item in self._argidx |
612
|
|
|
|
613
|
|
|
def __repr__(self): |
614
|
|
|
return '{}("{}")'.format(__class__.__name__, self._path) |
615
|
|
|
|
616
|
|
|
def __str__(self): |
617
|
|
|
return str(self._path) |
618
|
|
|
|
619
|
|
|
def __eq__(self, other): |
620
|
|
|
""" Return True if `self` and `other` are equal, False otherwise. |
621
|
|
|
Parameters |
622
|
|
|
---------- |
623
|
|
|
other: Crumb |
624
|
|
|
|
625
|
|
|
Returns |
626
|
|
|
------- |
627
|
|
|
is_equal: bool |
628
|
|
|
""" |
629
|
|
|
if self._path != other._path: |
630
|
|
|
return False |
631
|
|
|
|
632
|
|
|
if self._argidx != other._argidx: |
633
|
|
|
return False |
634
|
|
|
|
635
|
|
|
if self._ignore != other._ignore: |
636
|
|
|
return False |
637
|
|
|
|
638
|
|
|
return True |
639
|
|
|
|
640
|
|
|
|