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# -*- coding: utf-8 -*- |
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# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- |
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# vi: set ft=python sts=4 ts=4 sw=4 et: |
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""" |
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Crumb class: the smart path model class. |
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""" |
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import os.path as op |
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from copy import deepcopy |
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from collections import OrderedDict, Mapping, Sequence |
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from pathlib import Path |
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from functools import partial |
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from six import string_types |
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from .utils import remove_duplicates, list_children |
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from ._utils import (_get_path, _arg_name, |
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_is_crumb_arg, _replace, |
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_split_exists, _split, |
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_touch, has_crumbs, is_valid, |
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#_arg_format, |
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) |
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class Crumb(object): |
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""" The crumb path model class. |
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Parameters |
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---------- |
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crumb_path: str |
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A file or folder path with crumb arguments. See Examples. |
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ignore_list: sequence of str |
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A list of `fnmatch` patterns of filenames to be ignored. |
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Examples |
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-------- |
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>>> crumb = Crumb("{base_dir}/raw/{subject_id}/{session_id}/{modality}/{image}") |
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>>> cr = Crumb(op.join(op.expanduser('~'), '{user_folder}')) |
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""" |
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# symbols indicating start and end of a crumb argument |
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_start_end_syms = ('{', '}') |
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# specify partial functions from _utils with _arg_start_sym and _arg_end_sym |
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# everything would be much simpler if I hardcoded these symbols but I still |
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# feel that this flexibility is nice to have. |
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# _arg_format = partial(_arg_format, start_sym=_arg_start_sym, end_sym=_arg_end_sym) |
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_is_crumb_arg = partial(_is_crumb_arg, start_end_syms=_start_end_syms) |
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_arg_name = partial(_arg_name, start_end_syms=_start_end_syms) |
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is_valid = partial(is_valid, start_end_syms=_start_end_syms) |
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has_crumbs = partial(has_crumbs, start_end_syms=_start_end_syms) |
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_replace = partial(_replace, start_end_syms=_start_end_syms) |
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_split = partial(_split, start_end_syms=_start_end_syms) |
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_touch = partial(_touch, start_end_syms=_start_end_syms) |
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_split_exists = partial(_split_exists, start_end_syms=_start_end_syms) |
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def __init__(self, crumb_path, ignore_list=()): |
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self._path = _get_path(crumb_path) |
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self._argidx = OrderedDict() |
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self._ignore = ignore_list |
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self._update() |
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@property |
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def path(self): |
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"""Return the current crumb path string.""" |
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return self._path |
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@path.setter |
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def path(self, value): |
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""" Set the current crumb path string and updates the internal members. |
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Parameters |
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---------- |
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value: str |
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A file or folder path with crumb arguments. See Examples in class docstring. |
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""" |
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self._path = value |
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self._update() |
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def _check(self): |
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if not self.is_valid(self._path): |
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raise ValueError("The current crumb path has errors, got {}.".format(self.path)) |
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def _update(self): |
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""" Clean up, parse the current crumb path and fill the internal |
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members for functioning.""" |
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self._clean() |
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self._check() |
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self._set_argidx() |
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# self._set_replace_func() |
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def _clean(self): |
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""" Clean up the private utility members, i.e., _argidx. """ |
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self._argidx = OrderedDict() |
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@classmethod |
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def copy(cls, crumb): |
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""" Return a deep copy of the given `crumb`. |
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Parameters |
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---------- |
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crumb: str or Crumb |
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Returns |
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------- |
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copy: Crumb |
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""" |
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if isinstance(crumb, cls): |
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return cls(crumb._path, ignore_list=crumb._ignore) |
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elif isinstance(crumb, string_types): |
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return cls.from_path(crumb) |
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else: |
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raise TypeError("Expected a Crumb or a str to copy, got {}.".format(type(crumb))) |
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def _set_argidx(self): |
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""" Initialize the self._argidx dict. It holds arg_name -> index. |
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The index is the position in the whole `_path.split(op.sep)` where each argument is. |
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""" |
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fs = self._path_split() |
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for idx, f in enumerate(fs): |
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if self._is_crumb_arg(f): |
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self._argidx[self._arg_name(f)] = idx |
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def _find_arg(self, arg_name): |
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""" Return the index in the current path of the crumb |
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argument with name `arg_name`. |
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""" |
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return self._argidx.get(arg_name, -1) |
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def isabs(self): |
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""" Return True if the current crumb path has an |
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absolute path, False otherwise. |
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This means that if it is valid and does not start with a `op.sep` character |
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or hard disk letter. |
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""" |
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if not self.is_valid(self._path): |
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raise ValueError("The given crumb path has errors, got {}.".format(self.path)) |
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start_sym, _ = self._start_end_syms |
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subp = self._path.split(start_sym)[0] |
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return op.isabs(subp) |
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def abspath(self, first_is_basedir=False): |
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""" Return a copy of `self` with an absolute crumb path. |
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Add as prefix the absolute path to the current directory if the current |
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crumb is not absolute. |
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Parameters |
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---------- |
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first_is_basedir: bool |
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If True and the current crumb path starts with a crumb argument and first_is_basedir, |
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the first argument will be replaced by the absolute path to the current dir, |
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otherwise the absolute path to the current dir will be added as a prefix. |
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Returns |
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------- |
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abs_crumb: Crumb |
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""" |
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if not self.is_valid(self._path): |
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raise ValueError("The given crumb path has errors, got {}.".format(self.path)) |
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if self.isabs(): |
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return deepcopy(self) |
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return self.copy(self._abspath(first_is_basedir=first_is_basedir)) |
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def _path_split(self): |
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return self._path.split(op.sep) |
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def _abspath(self, first_is_basedir=False): |
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""" Return the absolute path of the current crumb path. |
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Parameters |
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---------- |
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first_is_basedir: bool |
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If True and the current crumb path starts with a crumb argument and first_is_basedir, |
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the first argument will be replaced by the absolute path to the current dir, |
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otherwise the absolute path to the current dir will be added as a prefix. |
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Returns |
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------- |
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abspath: str |
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""" |
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if not self.has_crumbs(self._path): |
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return op.abspath(self._path) |
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splt = self._path_split() |
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path = [] |
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if self._is_crumb_arg(splt[0]): |
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path.append(op.abspath(op.curdir)) |
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if not first_is_basedir: |
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path.append(splt[0]) |
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if splt[1:]: |
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path.extend(splt[1:]) |
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return op.sep.join(path) |
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def split(self): |
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""" Return a list of sub-strings of the current crumb path where the |
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path parts are separated from the crumb arguments. |
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Returns |
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------- |
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crumbs: list of str |
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""" |
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return self._split(self._path) |
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@classmethod |
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def from_path(cls, crumb_path): |
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""" Create an instance of Crumb out of `crumb_path`. |
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Parameters |
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---------- |
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val: str or Crumb or pathlib.Path |
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Returns |
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------- |
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path: Crumb |
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""" |
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if isinstance(crumb_path, (cls, Path)): |
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return cls.copy(crumb_path) |
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if isinstance(crumb_path, string_types): |
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return cls(crumb_path) |
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else: |
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raise TypeError("Expected a `val` to be a `str`, got {}.".format(type(crumb_path))) |
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def _lastarg(self): |
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""" Return the name and idx of the last argument.""" |
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for arg, idx in reversed(list(self._argidx.items())): |
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return arg, idx |
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def _firstarg(self): |
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""" Return the name and idx of the first argument.""" |
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for arg, idx in self._argidx.items(): |
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return arg, idx |
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def _is_firstarg(self, arg_name): |
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""" Return True if `arg_name` is the first argument.""" |
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# Take into account that self._argidx is OrderedDict |
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return arg_name == self._firstarg()[0] |
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def _arg_values(self, arg_name, arg_values=None): |
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""" Return the existing values in the file system for the crumb argument |
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with name `arg_name`. |
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The `arg_values` must be a sequence with the tuples with valid values of the dependent |
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(previous in the path) crumb arguments. |
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The format of `arg_values` work in such a way that `self._path.format(dict(arg_values[0]))` |
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would give me a valid path or crumb. |
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Parameters |
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---------- |
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arg_name: str |
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arg_values: list of tuples |
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Returns |
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------- |
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vals: list of tuples |
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Raises |
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------ |
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ValueError: if `arg_values` is None and `arg_name` is not the |
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first crumb argument in self._path |
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IOError: if this crosses to any path that is non-existing. |
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""" |
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if arg_values is None and not self._is_firstarg(arg_name): |
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raise ValueError("Cannot get the list of values for {} if" |
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" the previous arguments are not filled" |
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" in `paths`.".format(arg_name)) |
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aidx = self._find_arg(arg_name) |
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# check if the path is absolute, do it absolute |
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apath = self._abspath() |
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splt = apath.split(op.sep) |
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if aidx == len(splt) - 1: # this means we have to list files too |
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just_dirs = False |
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else: # this means we have to list folders |
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just_dirs = True |
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vals = [] |
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if arg_values is None: |
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base = op.sep.join(splt[:aidx]) |
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vals = [[(arg_name, val)] for val in list_children(base, just_dirs=just_dirs, ignore=self._ignore)] |
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else: |
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for aval in arg_values: |
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# create the part of the crumb path that is already specified |
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path = self._split(self._replace(self._path, **dict(aval)))[0] |
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# list the children of `path` |
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subpaths = list_children(path, just_dirs=just_dirs, ignore=self._ignore) |
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# extend `val` tuples with the new list of values for `aval` |
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vals.extend([aval + [(arg_name, sp)] for sp in subpaths]) |
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return vals |
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def replace(self, **kwargs): |
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""" Return a copy of self with the crumb arguments in |
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`kwargs` replaced by its values. |
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Parameters |
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---------- |
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kwargs: strings |
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Returns |
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------- |
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crumb: |
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""" |
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for arg_name in kwargs: |
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if arg_name not in self._argidx: |
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raise KeyError("Expected `arg_name` to be one of ({})," |
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" got {}.".format(list(self._argidx), arg_name)) |
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cr = self.copy(self) |
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cr._path = cr._replace(self._path, **kwargs) |
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return Crumb.from_path(cr._path) |
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def _arg_deps(self, arg_name): |
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""" Return a subdict of `self._argidx` with the |
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values from the crumb arguments that come before |
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`arg_name` in the crumb path. |
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Parameters |
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---------- |
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arg_name: str |
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Returns |
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------- |
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arg_deps: Mapping[str, int] |
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""" |
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argidx = self._find_arg(arg_name) |
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return OrderedDict([(arg, idx) for arg, idx in self._argidx.items() if idx <= argidx]) |
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def values_map(self, arg_name, check_exists=False): |
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""" Return a list of tuples of crumb arguments with their values. |
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Parameters |
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---------- |
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arg_name: str |
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check_exists: bool |
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Returns |
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------- |
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values_map: list of lists of 2-tuples |
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""" |
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arg_deps = self._arg_deps(arg_name) |
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values_map = None |
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for arg in arg_deps: |
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values_map = self._arg_values(arg, values_map) |
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if check_exists: |
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paths = [self.from_path(path) for path in self._build_paths(values_map)] |
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values_map_checked = [args for args, path in zip(values_map, paths) if path.exists()] |
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else: |
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values_map_checked = values_map |
357
|
|
|
|
358
|
|
|
return values_map_checked |
359
|
|
|
|
360
|
|
|
def _build_paths(self, values_map): |
361
|
|
|
""" Return a list of paths from each tuple of args from `values_map` |
362
|
|
|
Parameters |
363
|
|
|
---------- |
364
|
|
|
values_map: list of sequences of 2-tuple |
365
|
|
|
|
366
|
|
|
Returns |
367
|
|
|
------- |
368
|
|
|
paths: list of str |
369
|
|
|
""" |
370
|
|
|
return [self._replace(self._path, **dict(val)) for val in values_map] |
371
|
|
|
|
372
|
|
|
def ls(self, arg_name, fullpath=True, make_crumbs=True, check_exists=False): |
373
|
|
|
""" |
374
|
|
|
Return the list of values for the argument crumb `arg_name`. |
375
|
|
|
This will also unfold any other argument crumb that appears before in the |
376
|
|
|
path. |
377
|
|
|
Parameters |
378
|
|
|
---------- |
379
|
|
|
arg_name: str |
380
|
|
|
Name of the argument crumb to be unfolded. |
381
|
|
|
|
382
|
|
|
fullpath: bool |
383
|
|
|
If True will build the full path of the crumb path, will also append |
384
|
|
|
the rest of crumbs not unfolded. |
385
|
|
|
If False will only return the values for the argument with name |
386
|
|
|
`arg_name`. |
387
|
|
|
|
388
|
|
|
make_crumbs: bool |
389
|
|
|
If `fullpath` and `make_crumbs` is True will create a Crumb for |
390
|
|
|
each element of the result. |
391
|
|
|
|
392
|
|
|
check_exists: bool |
393
|
|
|
If True will return only str, Crumb or Path if it exists |
394
|
|
|
in the file path, otherwise it may create file paths |
395
|
|
|
that don't have to exist. |
396
|
|
|
|
397
|
|
|
Returns |
398
|
|
|
------- |
399
|
|
|
values: list of str or Crumb |
400
|
|
|
|
401
|
|
|
Examples |
402
|
|
|
-------- |
403
|
|
|
>>> cr = Crumb(op.join(op.expanduser('~'), '{user_folder}')) |
404
|
|
|
>>> user_folders = cr.ls('user_folder',fullpath=True,make_crumbs=True) |
405
|
|
|
""" |
406
|
|
|
if arg_name not in self._argidx: |
407
|
|
|
raise ValueError("Expected `arg_name` to be one of ({})," |
408
|
|
|
" got {}.".format(list(self._argidx), arg_name)) |
409
|
|
|
|
410
|
|
|
start_sym, _ = self._start_end_syms |
411
|
|
|
|
412
|
|
|
# if the first chunk of the path is a parameter, I am not interested in this (for now) |
413
|
|
|
if self._path.startswith(start_sym): |
414
|
|
|
raise NotImplementedError("Can't list paths that starts" |
415
|
|
|
" with an argument.") |
416
|
|
|
|
417
|
|
|
if make_crumbs and not fullpath: |
418
|
|
|
raise ValueError("`make_crumbs` can only work if `fullpath` is also True.") |
419
|
|
|
|
420
|
|
|
values_map = self.values_map(arg_name, check_exists=check_exists) |
421
|
|
|
|
422
|
|
|
if not fullpath and not make_crumbs: |
423
|
|
|
paths = [dict(val)[arg_name] for val in values_map] |
424
|
|
|
|
425
|
|
|
elif fullpath and not make_crumbs: |
426
|
|
|
paths = sorted(self._build_paths(values_map)) |
427
|
|
|
|
428
|
|
|
elif fullpath and make_crumbs: |
429
|
|
|
paths = sorted(self._build_paths(values_map)) |
430
|
|
|
paths = [self.from_path(path) for path in paths] |
431
|
|
|
|
432
|
|
|
return paths |
433
|
|
|
|
434
|
|
|
def _remaining_deps(self, arg_names): |
435
|
|
|
""" Return the name of the arguments that are dependencies of `arg_names`. |
436
|
|
|
Parameters |
437
|
|
|
---------- |
438
|
|
|
arg_names: Sequence[str] |
439
|
|
|
|
440
|
|
|
Returns |
441
|
|
|
------- |
442
|
|
|
rem_deps: Sequence[str] |
443
|
|
|
""" |
444
|
|
|
started = False |
445
|
|
|
rem_deps = [] |
446
|
|
|
for an in reversed(list(self._argidx.keys())): # take into account that argidx is ordered |
447
|
|
|
if an in arg_names: |
448
|
|
|
started = True |
449
|
|
|
else: |
450
|
|
|
if started: |
451
|
|
|
rem_deps.append(an) |
452
|
|
|
|
453
|
|
|
return rem_deps |
454
|
|
|
|
455
|
|
|
def touch(self): |
456
|
|
|
""" Create a leaf directory and all intermediate ones |
457
|
|
|
using the non crumbed part of `crumb_path`. |
458
|
|
|
If the target directory already exists, raise an IOError |
459
|
|
|
if exist_ok is False. Otherwise no exception is raised. |
460
|
|
|
Parameters |
461
|
|
|
---------- |
462
|
|
|
crumb_path: str |
463
|
|
|
|
464
|
|
|
exist_ok: bool |
465
|
|
|
Default = True |
466
|
|
|
|
467
|
|
|
Returns |
468
|
|
|
------- |
469
|
|
|
nupath: str |
470
|
|
|
The new path created. |
471
|
|
|
""" |
472
|
|
|
return self._touch(self._path) |
473
|
|
|
|
474
|
|
|
def joinpath(self, suffix): |
475
|
|
|
""" Return a copy of the current crumb with the `suffix` path appended. |
476
|
|
|
If suffix has crumb arguments, the whole crumb will be updated. |
477
|
|
|
Parameters |
478
|
|
|
---------- |
479
|
|
|
suffix: str |
480
|
|
|
|
481
|
|
|
Returns |
482
|
|
|
------- |
483
|
|
|
cr: Crumb |
484
|
|
|
""" |
485
|
|
|
return Crumb(op.join(self._path, suffix)) |
486
|
|
|
|
487
|
|
|
def exists(self): |
488
|
|
|
""" Return True if the current crumb path is a possibly existing path, |
489
|
|
|
False otherwise. |
490
|
|
|
Returns |
491
|
|
|
------- |
492
|
|
|
exists: bool |
493
|
|
|
""" |
494
|
|
|
if not self.has_crumbs(self._path): |
495
|
|
|
return op.exists(str(self)) or op.islink(str(self)) |
496
|
|
|
|
497
|
|
|
if not op.exists(self.split()[0]): |
498
|
|
|
return False |
499
|
|
|
|
500
|
|
|
last, _ = self._lastarg() |
501
|
|
|
paths = self.ls(last, fullpath=True, make_crumbs=False, check_exists=False) |
502
|
|
|
|
503
|
|
|
return all([self._split_exists(lp) for lp in paths]) |
504
|
|
|
|
505
|
|
|
def has_files(self): |
506
|
|
|
""" Return True if the current crumb path has any file in its |
507
|
|
|
possible paths. |
508
|
|
|
Returns |
509
|
|
|
------- |
510
|
|
|
has_files: bool |
511
|
|
|
""" |
512
|
|
|
if not op.exists(self.split()[0]): |
513
|
|
|
return False |
514
|
|
|
|
515
|
|
|
last, _ = self._lastarg() |
516
|
|
|
paths = self.ls(last, fullpath=True, make_crumbs=True, check_exists=True) |
517
|
|
|
|
518
|
|
|
return any([op.isfile(str(lp)) for lp in paths]) |
519
|
|
|
|
520
|
|
|
def unfold(self): |
521
|
|
|
""" Return a list of all the existing paths until the last crumb argument. |
522
|
|
|
Returns |
523
|
|
|
------- |
524
|
|
|
paths: list of pathlib.Path |
525
|
|
|
""" |
526
|
|
|
return self.ls(self._lastarg()[0], fullpath=True, make_crumbs=True, check_exists=True) |
527
|
|
|
|
528
|
|
|
def __getitem__(self, arg_name): |
529
|
|
|
""" Return the existing values of the crumb argument `arg_name` |
530
|
|
|
without removing duplicates. |
531
|
|
|
Parameters |
532
|
|
|
---------- |
533
|
|
|
arg_name: str |
534
|
|
|
|
535
|
|
|
Returns |
536
|
|
|
------- |
537
|
|
|
values: list of str |
538
|
|
|
""" |
539
|
|
|
return self.ls(arg_name, fullpath=False, make_crumbs=False, check_exists=True) |
540
|
|
|
|
541
|
|
|
def __setitem__(self, key, value): |
542
|
|
|
if key not in self._argidx: |
543
|
|
|
raise KeyError("Expected `arg_name` to be one of ({})," |
544
|
|
|
" got {}.".format(list(self._argidx), key)) |
545
|
|
|
|
546
|
|
|
self._path = self._replace(self._path, **{key: value}) |
547
|
|
|
self._update() |
548
|
|
|
|
549
|
|
|
def __ge__(self, other): |
550
|
|
|
return self._path >= str(other) |
551
|
|
|
|
552
|
|
|
def __le__(self, other): |
553
|
|
|
return self._path <= str(other) |
554
|
|
|
|
555
|
|
|
def __gt__(self, other): |
556
|
|
|
return self._path > str(other) |
557
|
|
|
|
558
|
|
|
def __lt__(self, other): |
559
|
|
|
return self._path < str(other) |
560
|
|
|
|
561
|
|
|
def __hash__(self): |
562
|
|
|
return self._path.__hash__() |
563
|
|
|
|
564
|
|
|
def __contains__(self, item): |
565
|
|
|
return item in self._argidx |
566
|
|
|
|
567
|
|
|
def __repr__(self): |
568
|
|
|
return '{}("{}")'.format(__class__.__name__, self._path) |
569
|
|
|
|
570
|
|
|
def __str__(self): |
571
|
|
|
return str(self._path) |
572
|
|
|
|
573
|
|
|
def __eq__(self, other): |
574
|
|
|
""" Return True if `self` and `other` are equal, False otherwise. |
575
|
|
|
Parameters |
576
|
|
|
---------- |
577
|
|
|
other: Crumb |
578
|
|
|
|
579
|
|
|
Returns |
580
|
|
|
------- |
581
|
|
|
is_equal: bool |
582
|
|
|
""" |
583
|
|
|
if self._path != other._path: |
584
|
|
|
return False |
585
|
|
|
|
586
|
|
|
if self._argidx != other._argidx: |
587
|
|
|
return False |
588
|
|
|
|
589
|
|
|
if self._ignore != other._ignore: |
590
|
|
|
return False |
591
|
|
|
|
592
|
|
|
return True |
593
|
|
|
|
594
|
|
|
|