Enable duplicate code detection for Python code
1 | #!python |
||
2 | import click |
||
3 | |||
4 | from .utils import (CONTEXT_SETTINGS, |
||
5 | CrumbPath, |
||
6 | echo_list, |
||
7 | check_not_none,) |
||
8 | |||
9 | |||
10 | # declare the CLI group |
||
11 | @click.group(context_settings=CONTEXT_SETTINGS) |
||
12 | def cli(): |
||
13 | pass |
||
14 | |||
15 | |||
16 | @cli.command(context_settings=CONTEXT_SETTINGS) |
||
17 | @click.argument('crumb', type=CrumbPath(), callback=check_not_none) |
||
18 | @click.option('-i', '--ignore', type=str, multiple=True, |
||
19 | help='A global ignore fnmatch expression for the listing. ' |
||
20 | 'You can add as many of this argument as you want. ' |
||
21 | 'Example: ".*" or "*~"') |
||
22 | @click.option('-a', '--arg', type=str, |
||
23 | help='Name of the argument in `crumb` to print the values from.' |
||
24 | 'Will not print full paths, but only values for this ' |
||
25 | 'crumb argument.') |
||
26 | def ls(crumb, ignore, arg): |
||
27 | """List all the possible values that match the given crumb path. |
||
28 | |||
29 | Examples: \n |
||
30 | crumb ls "/data/hansel/cobre/{sid:4*100}/{session}/{img}"\n |
||
31 | crumb ls -i ".*" "/data/hansel/cobre/{sid}/{session}/{img:anat*}"\n |
||
32 | crumb ls -a "sid" "/data/hansel/cobre/{sid}/{session}/{img:anat*}"\n |
||
33 | """ |
||
34 | if not crumb.isabs(): |
||
35 | crumb = crumb.abspath() |
||
36 | |||
37 | crumb._ignore = ignore |
||
38 | if arg: |
||
39 | lst = crumb[arg] |
||
40 | else: |
||
41 | lst = crumb.ls() |
||
42 | |||
43 | if not lst: |
||
44 | exit(-1) |
||
45 | |||
46 | echo_list(lst) |
||
47 | |||
48 | |||
49 | @cli.command(context_settings=CONTEXT_SETTINGS) |
||
50 | View Code Duplication | @click.argument('src_crumb', type=CrumbPath(), callback=check_not_none) |
|
0 ignored issues
–
show
Duplication
introduced
by
Loading history...
|
|||
51 | @click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none) |
||
52 | @click.option('-q', '--quiet', is_flag=True, flag_value=True, |
||
53 | help='Flag to remove verbose.') |
||
54 | @click.option('-e', '--exist_ok', is_flag=True, flag_value=True, |
||
55 | help='Flag to allow overwriting destination path.') |
||
56 | @click.option('-i', '--ignore', type=str, multiple=True, |
||
57 | help='A global ignore fnmatch expression for the listing. ' |
||
58 | 'You can add as many of this argument as you want. ' |
||
59 | 'Example: ".*" or "*~"') |
||
60 | def copy(src_crumb, dst_crumb, quiet, ignore, exist_ok): |
||
61 | """Copy one file tree to another file tree. The |
||
62 | structure of the destination tree can be modified. |
||
63 | |||
64 | Examples: \n |
||
65 | crumb copy "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n |
||
66 | crumb copy "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n |
||
67 | """ |
||
68 | from .. import crumb_copy |
||
69 | |||
70 | if ignore: |
||
71 | src_crumb._ignore = ignore |
||
72 | dst_crumb._ignore = ignore |
||
73 | |||
74 | if not src_crumb.ls(): |
||
75 | click.echo('Could not find any file that matched {}.'.format(src_crumb)) |
||
76 | exit(-1) |
||
77 | |||
78 | crumb_copy(src_crumb, dst_crumb, |
||
79 | exist_ok=exist_ok, |
||
80 | verbose=(not quiet)) |
||
81 | |||
82 | |||
83 | |||
84 | @cli.command(context_settings=CONTEXT_SETTINGS) |
||
85 | View Code Duplication | @click.argument('src_crumb', type=CrumbPath(), callback=check_not_none) |
|
86 | @click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none) |
||
87 | @click.option('-q', '--quiet', is_flag=True, flag_value=True, |
||
88 | help='Flag to remove verbose.') |
||
89 | @click.option('-e', '--exist_ok', is_flag=True, flag_value=True, |
||
90 | help='Flag to allow overwriting destination path.') |
||
91 | @click.option('-i', '--ignore', type=str, multiple=True, |
||
92 | help='A global ignore fnmatch expression for the listing. ' |
||
93 | 'You can add as many of this argument as you want. ' |
||
94 | 'Example: ".*" or "*~"') |
||
95 | def link(src_crumb, dst_crumb, quiet, ignore, exist_ok): |
||
96 | """Link one file tree to another file tree. The |
||
97 | structure of the destination tree can be modified. |
||
98 | Only the leaf nodes will be linked, the folder structure above will be |
||
99 | created. |
||
100 | |||
101 | Examples: \n |
||
102 | crumb link "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n |
||
103 | crumb link "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n |
||
104 | """ |
||
105 | from .. import crumb_link |
||
106 | |||
107 | if ignore: |
||
108 | src_crumb._ignore = ignore |
||
109 | dst_crumb._ignore = ignore |
||
110 | |||
111 | if not src_crumb.ls(): |
||
112 | click.echo('Could not find any file that matched {}.'.format(src_crumb)) |
||
113 | exit(-1) |
||
114 | |||
115 | crumb_link(src_crumb, dst_crumb, |
||
116 | exist_ok=exist_ok, |
||
117 | verbose=(not quiet)) |
||
118 | |||
119 | |||
120 | @cli.command(context_settings=CONTEXT_SETTINGS) |
||
121 | @click.argument('crumb1', type=CrumbPath(), callback=check_not_none) |
||
122 | @click.argument('crumb2', type=CrumbPath(), callback=check_not_none) |
||
123 | @click.option('-o', '--on', type=str, multiple=True, |
||
124 | help='Argument name to check for intersection. You can use this ' |
||
125 | 'argument more than once.') |
||
126 | @click.option('-a', '--arg', type=str, |
||
127 | help='Will not print full paths, but only values for this ' |
||
128 | 'crumb argument.') |
||
129 | def intersect(crumb1, crumb2, on, arg): |
||
130 | """Return the intersection between crumb1 and crumb2 on a given argument. |
||
131 | |||
132 | Examples: \n |
||
133 | crumb intersect --on "sid" "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}"\n |
||
134 | """ |
||
135 | from .. import intersection |
||
136 | |||
137 | intersects = intersection(crumb1, crumb2, on=on) |
||
138 | for values in intersects: |
||
139 | click.echo(', '.join([arg[1] for arg in values])) |
||
140 |