diff() - Code Metrics - Inspection of "add difference function" - alexsavio/hansel - Measure and Improve Code Quality continuously with Scrutinizer

Completed

Push — master ( c8d778...5b8e36 )

by Alexandre M.

created 2016-12-16 16:30 UTC

diff() B

↳ Parent: Project

Complexity

Conditions

Size

Total Lines

Duplication

Lines	31
Ratio	100 %

Importance

Changes	1
Bugs	0	Features	1

Metric	Value
cc	3
c	1
b	0
f	1
dl	31
loc	31
rs	8.8571

#!python
import click

from .utils import (CONTEXT_SETTINGS,
                    CrumbPath,
                    echo_list,
                    _print_values_map_as_csv,
                    check_not_none,)


# declare the CLI group
@click.group(context_settings=CONTEXT_SETTINGS)
def cli():
    pass


@cli.command(context_settings=CONTEXT_SETTINGS)
@click.argument('crumb', type=CrumbPath(), callback=check_not_none)
@click.option('-i', '--ignore', type=str, multiple=True,
              help='A global ignore fnmatch expression for the listing. '
                   'You can add as many of this argument as you want. '
                   'Example: ".*" or "*~"')
@click.option('-a', '--arg', type=str,
              help='Name of the argument in `crumb` to print the values from.'
                   'Will not print full paths, but only values for this '
                   'crumb argument.')
def ls(crumb, ignore, arg):
    """List all the possible values that match the given crumb path.

    Examples: \n
    crumb ls "/data/hansel/cobre/{sid:4*100}/{session}/{img}"\n
    crumb ls -i ".*" "/data/hansel/cobre/{sid}/{session}/{img:anat*}"\n
    crumb ls -a "sid" "/data/hansel/cobre/{sid}/{session}/{img:anat*}"\n
    """
    if not crumb.isabs():
        crumb = crumb.abspath()

    crumb._ignore = ignore
    if arg:
        lst = crumb[arg]
    else:
        lst = crumb.ls()

    if not lst:
        exit(-1)

    echo_list(lst)


@cli.command(context_settings=CONTEXT_SETTINGS)

@click.argument('src_crumb', type=CrumbPath(), callback=check_not_none)
@click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none)
@click.option('-q', '--quiet', is_flag=True, flag_value=True,
              help='Flag to remove verbose.')
@click.option('-e', '--exist_ok', is_flag=True, flag_value=True,
              help='Flag to allow overwriting destination path.')
@click.option('-i', '--ignore', type=str, multiple=True,
              help='A global ignore fnmatch expression for the listing. '
                   'You can add as many of this argument as you want. '
                   'Example: ".*" or "*~"')
def copy(src_crumb, dst_crumb, quiet, ignore, exist_ok):
    """Copy one file tree to another file tree. The
    structure of the destination tree can be modified.

    Examples: \n
    crumb copy "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n
    crumb copy "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n
    """
    from .. import crumb_copy

    if ignore:
        src_crumb._ignore = ignore
        dst_crumb._ignore = ignore

    if not src_crumb.ls():
        click.echo('Could not find any file that matched {}.'.format(src_crumb))
        exit(-1)

    crumb_copy(src_crumb, dst_crumb,
               exist_ok=exist_ok,
               verbose=(not quiet))



@cli.command(context_settings=CONTEXT_SETTINGS)

@click.argument('src_crumb', type=CrumbPath(), callback=check_not_none)
@click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none)
@click.option('-q', '--quiet', is_flag=True, flag_value=True,
              help='Flag to remove verbose.')
@click.option('-e', '--exist_ok', is_flag=True, flag_value=True,
              help='Flag to allow overwriting destination path.')
@click.option('-i', '--ignore', type=str, multiple=True,
              help='A global ignore fnmatch expression for the listing. '
                   'You can add as many of this argument as you want. '
                   'Example: ".*" or "*~"')
def link(src_crumb, dst_crumb, quiet, ignore, exist_ok):
    """Link one file tree to another file tree. The
    structure of the destination tree can be modified.
    Only the leaf nodes will be linked, the folder structure above will be
    created.

    Examples: \n
    crumb link "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n
    crumb link "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n
    """
    from .. import crumb_link

    if ignore:
        src_crumb._ignore = ignore
        dst_crumb._ignore = ignore

    if not src_crumb.ls():
        click.echo('Could not find any file that matched {}.'.format(src_crumb))
        exit(-1)

    crumb_link(src_crumb, dst_crumb,
               exist_ok=exist_ok,
               verbose=(not quiet))


@cli.command(context_settings=CONTEXT_SETTINGS)

@click.argument('crumb1', type=CrumbPath(), callback=check_not_none)
@click.argument('crumb2', type=CrumbPath(), callback=check_not_none)
@click.option('-o', '--on', type=str, multiple=True,
              help='Argument name to check for intersection. You can use this '
                   'argument more than once.')
@click.option('-b', '--base', type=click.Choice(['1', '2']), default='0',
              help='1 or 2, to indicate `crumb1` or `crumb2` as a base crumb2 '
                   'to print the results')
def intersect(crumb1, crumb2, on, base):
    """Return the intersection between crumb1 and crumb2 on a given argument.

    Will not print full paths, but only values for the crumb arguments in `on`.
    Unless you specify the crumb you want to use as a base with the `base`
    argument.

    Examples: \n
    crumb intersect --on "sid" "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}"\n
    """
    from .. import intersection

    values = intersection(crumb1, crumb2, on=on)
    if base == '0':
        _print_values_map_as_csv(values)
    else:
        if base == '1':
            base_crumb = crumb1
        else:
            base_crumb = crumb2

        echo_list(base_crumb.build_paths(values))


@cli.command(context_settings=CONTEXT_SETTINGS)

@click.argument('crumb1', type=CrumbPath(), callback=check_not_none)
@click.argument('crumb2', type=CrumbPath(), callback=check_not_none)
@click.option('-o', '--on', type=str, multiple=True,
              help='Argument name to check for intersection. You can use this '
                   'argument more than once.')
@click.option('-b', '--base', type=click.Choice(['1', '2']), default='0',
              help='1 or 2, to indicate `crumb1` or `crumb2` as a base crumb2 '
                   'to print the results')
def diff(crumb1, crumb2, on, base):
    """Return the difference crumb1 - crumb2 on a given argument.

    Will not print full paths, but only values for the crumb arguments in `on`.
    Unless you specify the crumb you want to use as a base with the `base`
    argument.

    Examples: \n
    crumb diff --on "sid" "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}"\n
    """
    from .. import difference

    values = difference(crumb1, crumb2, on=on)
    if base == '0':
        _print_values_map_as_csv(values)
    else:
        if base == '1':
            base_crumb = crumb1
        else:
            base_crumb = crumb2

        echo_list(base_crumb.build_paths(values))


1		#!python
2		import click
3
4		from .utils import (CONTEXT_SETTINGS,
5		CrumbPath,
6		echo_list,
7		_print_values_map_as_csv,
8		check_not_none,)
9
10
11		# declare the CLI group
12		@click.group(context_settings=CONTEXT_SETTINGS)
13		def cli():
14		pass
15
16
17		@cli.command(context_settings=CONTEXT_SETTINGS)
18		@click.argument('crumb', type=CrumbPath(), callback=check_not_none)
19		@click.option('-i', '--ignore', type=str, multiple=True,
20		help='A global ignore fnmatch expression for the listing. '
21		'You can add as many of this argument as you want. '
22		'Example: "." or "~"')
23		@click.option('-a', '--arg', type=str,
24		help='Name of the argument in `crumb` to print the values from.'
25		'Will not print full paths, but only values for this '
26		'crumb argument.')
27		def ls(crumb, ignore, arg):
28		"""List all the possible values that match the given crumb path.
29
30		Examples: \n
31		crumb ls "/data/hansel/cobre/{sid:4*100}/{session}/{img}"\n
32		crumb ls -i "." "/data/hansel/cobre/{sid}/{session}/{img:anat}"\n
33		crumb ls -a "sid" "/data/hansel/cobre/{sid}/{session}/{img:anat*}"\n
34		"""
35		if not crumb.isabs():
36		crumb = crumb.abspath()
37
38		crumb._ignore = ignore
39		if arg:
40		lst = crumb[arg]
41		else:
42		lst = crumb.ls()
43
44		if not lst:
45		exit(-1)
46
47		echo_list(lst)
48
49
50	View Code Duplication	@cli.command(context_settings=CONTEXT_SETTINGS)
		0 ignored issues – show Duplication introduced 2016-09-29 16:17 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
51		@click.argument('src_crumb', type=CrumbPath(), callback=check_not_none)
52		@click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none)
53		@click.option('-q', '--quiet', is_flag=True, flag_value=True,
54		help='Flag to remove verbose.')
55		@click.option('-e', '--exist_ok', is_flag=True, flag_value=True,
56		help='Flag to allow overwriting destination path.')
57		@click.option('-i', '--ignore', type=str, multiple=True,
58		help='A global ignore fnmatch expression for the listing. '
59		'You can add as many of this argument as you want. '
60		'Example: "." or "~"')
61		def copy(src_crumb, dst_crumb, quiet, ignore, exist_ok):
62		"""Copy one file tree to another file tree. The
63		structure of the destination tree can be modified.
64
65		Examples: \n
66		crumb copy "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n
67		crumb copy "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n
68		"""
69		from .. import crumb_copy
70
71		if ignore:
72		src_crumb._ignore = ignore
73		dst_crumb._ignore = ignore
74
75		if not src_crumb.ls():
76		click.echo('Could not find any file that matched {}.'.format(src_crumb))
77		exit(-1)
78
79		crumb_copy(src_crumb, dst_crumb,
80		exist_ok=exist_ok,
81		verbose=(not quiet))
82
83
84
85	View Code Duplication	@cli.command(context_settings=CONTEXT_SETTINGS)
		0 ignored issues – show Duplication introduced 2016-12-16 16:31 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
86		@click.argument('src_crumb', type=CrumbPath(), callback=check_not_none)
87		@click.argument('dst_crumb', type=CrumbPath(), callback=check_not_none)
88		@click.option('-q', '--quiet', is_flag=True, flag_value=True,
89		help='Flag to remove verbose.')
90		@click.option('-e', '--exist_ok', is_flag=True, flag_value=True,
91		help='Flag to allow overwriting destination path.')
92		@click.option('-i', '--ignore', type=str, multiple=True,
93		help='A global ignore fnmatch expression for the listing. '
94		'You can add as many of this argument as you want. '
95		'Example: "." or "~"')
96		def link(src_crumb, dst_crumb, quiet, ignore, exist_ok):
97		"""Link one file tree to another file tree. The
98		structure of the destination tree can be modified.
99		Only the leaf nodes will be linked, the folder structure above will be
100		created.
101
102		Examples: \n
103		crumb link "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}" \n
104		crumb link "cobre/{sid}/{session}/{img:anat*}" "cobre_anat/{sid}/{img}" \n
105		"""
106		from .. import crumb_link
107
108		if ignore:
109		src_crumb._ignore = ignore
110		dst_crumb._ignore = ignore
111
112		if not src_crumb.ls():
113		click.echo('Could not find any file that matched {}.'.format(src_crumb))
114		exit(-1)
115
116		crumb_link(src_crumb, dst_crumb,
117		exist_ok=exist_ok,
118		verbose=(not quiet))
119
120
121	View Code Duplication	@cli.command(context_settings=CONTEXT_SETTINGS)
		0 ignored issues – show Duplication introduced 2016-12-16 16:31 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
122		@click.argument('crumb1', type=CrumbPath(), callback=check_not_none)
123		@click.argument('crumb2', type=CrumbPath(), callback=check_not_none)
124		@click.option('-o', '--on', type=str, multiple=True,
125		help='Argument name to check for intersection. You can use this '
126		'argument more than once.')
127		@click.option('-b', '--base', type=click.Choice(['1', '2']), default='0',
128		help='1 or 2, to indicate `crumb1` or `crumb2` as a base crumb2 '
129		'to print the results')
130		def intersect(crumb1, crumb2, on, base):
131		"""Return the intersection between crumb1 and crumb2 on a given argument.
132
133		Will not print full paths, but only values for the crumb arguments in `on`.
134		Unless you specify the crumb you want to use as a base with the `base`
135		argument.
136
137		Examples: \n
138		crumb intersect --on "sid" "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}"\n
139		"""
140		from .. import intersection
141
142		values = intersection(crumb1, crumb2, on=on)
143		if base == '0':
144		_print_values_map_as_csv(values)
145		else:
146		if base == '1':
147		base_crumb = crumb1
148		else:
149		base_crumb = crumb2
150
151		echo_list(base_crumb.build_paths(values))
152
153
154	View Code Duplication	@cli.command(context_settings=CONTEXT_SETTINGS)
		0 ignored issues – show Duplication introduced 2016-12-16 16:31 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
155		@click.argument('crumb1', type=CrumbPath(), callback=check_not_none)
156		@click.argument('crumb2', type=CrumbPath(), callback=check_not_none)
157		@click.option('-o', '--on', type=str, multiple=True,
158		help='Argument name to check for intersection. You can use this '
159		'argument more than once.')
160		@click.option('-b', '--base', type=click.Choice(['1', '2']), default='0',
161		help='1 or 2, to indicate `crumb1` or `crumb2` as a base crumb2 '
162		'to print the results')
163		def diff(crumb1, crumb2, on, base):
164		"""Return the difference crumb1 - crumb2 on a given argument.
165
166		Will not print full paths, but only values for the crumb arguments in `on`.
167		Unless you specify the crumb you want to use as a base with the `base`
168		argument.
169
170		Examples: \n
171		crumb diff --on "sid" "/data/hansel/cobre/{sid}/{session}/{img}" "/data/hansel/cobre2/{sid}/{img}"\n
172		"""
173		from .. import difference
174
175		values = difference(crumb1, crumb2, on=on)
176		if base == '0':
177		_print_values_map_as_csv(values)
178		else:
179		if base == '1':
180		base_crumb = crumb1
181		else:
182		base_crumb = crumb2
183
184		echo_list(base_crumb.build_paths(values))
185

alexsavio / hansel

Push — master ( c8d778...5b8e36 )

diff() B

Complexity

Size

Duplication

Importance

Duplication Side-by-Side

Filter issues like