klib.tests.test_util

Complexity

Total Complexity

39

Size/Duplication

Total Lines	171
Duplicated Lines	0 %

Importance

Changes

0

16 Methods

Rating	Name	Duplication	Size	Complexity
A	Test__corr_selector.test__corr_selector_matrix()	0	7	1
A	Test__drop_duplicates.setUpClass()	0	9	1
A	Test__corr_selector.test__corr_selector_label()	0	11	1
A	Test__drop_duplicates.test__drop_dupl()	0	7	1
A	Test__corr_selector.setUpClass()	0	10	1
A	Test__missing_vals.test_mv_total()	0	5	1
A	Test__missing_vals.test_mv_cols_ratio()	0	9	3
A	Test__missing_vals.test_mv_cols()	0	5	2
A	Test__missing_vals.setUpClass()	0	10	1
A	Test__missing_vals.test_mv_rows()	0	5	2
A	Test__missing_vals.test_mv_rows_ratio()	0	9	3
A	Test__validate_input.test__validate_input_range()	0	9	4
A	Test__validate_input.test__validate_input_int()	0	10	5
A	Test__validate_input.test__validate_input_sum()	0	9	5
A	Test__validate_input.test__validate_input_bool()	0	8	4
A	Test__validate_input.test__validate_input_smaller()	0	8	4

import numpy as np
import pandas as pd
import unittest
from ..utils import (_corr_selector,
                     _drop_duplicates,
                     _missing_vals,
                     _validate_input_bool,
                     _validate_input_int,
                     _validate_input_range,
                     _validate_input_smaller,
                     _validate_input_sum)


class Test__corr_selector(unittest.TestCase):

    @classmethod
    def setUpClass(cls):
        cls.df_data_corr = pd.DataFrame([[1, 7, 2, 2, 4, 7],
                                         [3, 8, 3, 3, 7, 1],
                                         [5, 7, 9, 5, 1, 4],
                                         [1, 7, 8, 6, 1, 8],
                                         [1, 7, 5, 6, 2, 6],
                                         [2, 7, 3, 3, 5, 3]])

        cls.target = pd.Series([1, 2, 4, 7, 4, 2])

    def test__corr_selector_matrix(self):
        self.assertEqual(_corr_selector(self.df_data_corr.corr()).shape, (6, 6))
        self.assertEqual(_corr_selector(self.df_data_corr.corr(), split='pos').isna().sum().sum(), 18)
        self.assertEqual(_corr_selector(self.df_data_corr.corr(), split='pos', threshold=0.5).isna().sum().sum(), 26)
        self.assertEqual(_corr_selector(self.df_data_corr.corr(), split='neg', threshold=-0.75).isna().sum().sum(), 32)
        self.assertEqual(_corr_selector(self.df_data_corr.corr(), split='above', threshold=0.15).isna().sum().sum(), 4)
        self.assertEqual(_corr_selector(self.df_data_corr.corr(), split='below', threshold=0.85).isna().sum().sum(), 6)

    def test__corr_selector_label(self):
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(self.target)).shape, (6, ))
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(self.target), split='pos').isna().sum(), 3)
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(
            self.target), split='pos', threshold=0.8).isna().sum(), 4)
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(
            self.target), split='neg', threshold=-0.7).isna().sum(), 5)
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(
            self.target), split='above', threshold=0.2).isna().sum(), 1)
        self.assertEqual(_corr_selector(self.df_data_corr.corrwith(
            self.target), split='below', threshold=0.8).isna().sum(), 2)


class Test__drop_duplicates(unittest.TestCase):

    @classmethod
    def setUpClass(cls):
        cls.data_dupl_df = pd.DataFrame([[pd.NA, pd.NA, pd.NA, pd.NA],
                                         [1, 2, 3, 4],
                                         [1, 2, 3, 4],
                                         [1, 2, 3, 4],
                                         [2, 3, 4, 5],
                                         [1, 2, 3, pd.NA],
                                         [pd.NA, pd.NA, pd.NA, pd.NA]])

    def test__drop_dupl(self):
        # Test dropping of duplicate rows
        self.assertAlmostEqual(_drop_duplicates(self.data_dupl_df)[0].shape, (4, 4))
        # Test if the resulting DataFrame is equal to using the pandas method
        self.assertTrue(_drop_duplicates(self.data_dupl_df)[0].equals(self.data_dupl_df.drop_duplicates()))
        # Test number of duplicates
        self.assertEqual(len(_drop_duplicates(self.data_dupl_df)[1]), 3)


class Test__missing_vals(unittest.TestCase):

    @classmethod
    def setUpClass(cls):
        cls.data_mv_list = [[1, np.nan, 3, 4],
                            [None, 4, 5, None],
                            ['a', 'b', pd.NA, 'd'],
                            [True, False, 7, pd.NaT]]

        cls.data_mv_df = pd.DataFrame(cls.data_mv_list)

        cls.data_mv_array = np.array(cls.data_mv_list)

    def test_mv_total(self):
        # Test total missing values
        self.assertAlmostEqual(_missing_vals(self.data_mv_df)['mv_total'], 5)
        self.assertAlmostEqual(_missing_vals(self.data_mv_array)['mv_total'], 5)
        self.assertAlmostEqual(_missing_vals(self.data_mv_list)['mv_total'], 5)

    def test_mv_rows(self):
        # Test missing values for each row
        expected_results = [1, 2, 1, 1]
        for i, _ in enumerate(expected_results):
            self.assertAlmostEqual(_missing_vals(self.data_mv_df)['mv_rows'][i], expected_results[i])

    def test_mv_cols(self):
        # Test missing values for each column
        expected_results = [1, 1, 1, 2]
        for i, _ in enumerate(expected_results):
            self.assertAlmostEqual(_missing_vals(self.data_mv_df)['mv_cols'][i], expected_results[i])

    def test_mv_rows_ratio(self):
        # Test missing values ratio for each row
        expected_results = [0.25, 0.5, 0.25, 0.25]
        for i, _ in enumerate(expected_results):
            self.assertAlmostEqual(_missing_vals(self.data_mv_df)['mv_rows_ratio'][i], expected_results[i])

        # Test if missing value ratio is between 0 and 1
        for i in range(len(self.data_mv_df)):
            self.assertTrue(0 <= _missing_vals(self.data_mv_df)['mv_rows_ratio'][i] <= 1)

    def test_mv_cols_ratio(self):
        # Test missing values ratio for each column
        expected_results = [1/4, 0.25, 0.25, 0.5]
        for i, _ in enumerate(expected_results):
            self.assertAlmostEqual(_missing_vals(self.data_mv_df)['mv_cols_ratio'][i], expected_results[i])

        # Test if missing value ratio is between 0 and 1
        for i in range(len(self.data_mv_df)):
            self.assertTrue(0 <= _missing_vals(self.data_mv_df)['mv_cols_ratio'][i] <= 1)


class Test__validate_input(unittest.TestCase):

    def test__validate_input_bool(self):
        # Raises an exception if the input is not boolean
        with self.assertRaises(TypeError):
            _validate_input_bool('True', None)
        with self.assertRaises(TypeError):
            _validate_input_bool(None, None)
        with self.assertRaises(TypeError):
            _validate_input_bool(1, None)

    def test__validate_input_int(self):
        # Raises an exception if the input is not an integer
        with self.assertRaises(TypeError):
            _validate_input_int(1.1, None)
        with self.assertRaises(TypeError):
            _validate_input_int(True, None)
        with self.assertRaises(TypeError):
            _validate_input_int([1], None)
        with self.assertRaises(TypeError):
            _validate_input_int('1', None)

    def test__validate_input_smaller(self):
        # Raises an exception if the first value is larger than the second
        with self.assertRaises(ValueError):
            _validate_input_smaller(0.3, 0.2, None)
        with self.assertRaises(ValueError):
            _validate_input_smaller(3, 2, None)
        with self.assertRaises(ValueError):
            _validate_input_smaller(5, -3, None)

    def test__validate_input_range(self):
        with self.assertRaises(ValueError):
            _validate_input_range(-0.1, 'value -0.1', 0, 1)

        with self.assertRaises(ValueError):
            _validate_input_range(1.1, 'value 1.1', 0, 1)

        with self.assertRaises(TypeError):
            _validate_input_range('1', 'value string', 0, 1)

    def test__validate_input_sum(self):
        with self.assertRaises(ValueError):
            _validate_input_sum(1, 'Test Sum <= 1', 1.1)
        with self.assertRaises(ValueError):
            _validate_input_sum(1, 'Test Sum <= 1', 0.3, 0.2, 0.4, 0.5)
        with self.assertRaises(ValueError):
            _validate_input_sum(-1, 'Test Sum <= -1', -0.2, -0.7)
        with self.assertRaises(ValueError):
            _validate_input_sum(10, 'Test Sum <= 10', 20, -11, 2)