Amenadiel\JpGraph\Plot\Contour

Complexity

Total Complexity

64

Size/Duplication

Total Lines	386
Duplicated Lines	0 %

Importance

Changes

0

12 Methods

Rating	Name	Duplication	Size	Complexity
F	getIsobars()	0	83	20
A	UseHighContrastColor()	0	4	1
A	determineIsobarEdgeCrossings()	0	17	5
A	CalculateColors()	0	21	6
A	SetInvert()	0	3	1
A	isobarHCrossing()	0	15	3
A	resetEdgeMatrices()	0	6	4
A	getMinMaxVal()	0	15	4
A	getCrossingCoord()	0	26	5
A	isobarVCrossing()	0	15	3
A	adjustDataPointValues()	0	9	5
B	__construct()	0	34	7

<?php

/**
 * JPGraph v4.0.3
 */

namespace Amenadiel\JpGraph\Plot;

use Amenadiel\JpGraph\Image;
use Amenadiel\JpGraph\Util;

/*
 * File:        JPGRAPH_CONTOUR.PHP
 * // Description: Contour plot
 * // Created:     2009-03-08
 * // Ver:         $Id: jpgraph_contour.php 1870 2009-09-29 04:24:18Z ljp $
 * //
 * // Copyright (c) Asial Corporation. All rights reserved.
 */
define('HORIZ_EDGE', 0);
define('VERT_EDGE', 1);

/**
 * This class encapsulates the core contour plot algorithm. It will find the path
 * of the specified isobars in the data matrix specified. It is assumed that the
 * data matrix models an equspaced X-Y mesh of datavalues corresponding to the Z
 * values.
 */
class Contour
{
    private $dataPoints   = [];
    private $nbrCols      = 0;
    private $nbrRows      = 0;
    private $horizEdges   = [];

The private property $horizEdges is not used, and could be removed.

    private $vertEdges    = [];

The private property $vertEdges is not used, and could be removed.

    private $isobarValues = [];
    private $stack;

The private property $stack is not used, and could be removed.

    private $isobarCoord    = [];
    private $nbrIsobars     = 10;
    private $isobarColors   = [];
    private $invert         = true;
    private $highcontrast   = false;
    private $highcontrastbw = false;

    /**
     * Create a new contour level "algorithm machine".
     *
     * @param $aMatrix    The values to find the contour from
     * @param $aIsobars Mixed. If integer it determines the number of isobars to be used. The levels are determined

The doc comment Mixed. at position 0 could not be parsed: Unknown type name 'Mixed.' at position 0 in Mixed..

     * automatically as equdistance between the min and max value of the matrice.
     * If $aIsobars is an array then this is interpretated as an array of values to be used as isobars in the
     * contour plot.
     * @param null|mixed $aColors
     *
     * @return an instance of the contour algorithm
     */
    public function __construct($aMatrix, $aIsobars = 10, $aColors = null)
    {
        $this->nbrRows    = safe_count($aMatrix);
        $this->nbrCols    = safe_count($aMatrix[0]);
        $this->dataPoints = $aMatrix;

        if (is_array($aIsobars)) {
            // use the isobar values supplied
            $this->nbrIsobars   = safe_count($aIsobars);
            $this->isobarValues = $aIsobars;
        } else {
            // Determine the isobar values automatically
            $this->nbrIsobars = $aIsobars;
            list($min, $max)  = $this->getMinMaxVal();
            $stepSize         = ($max - $min) / $aIsobars;
            $isobar           = $min + $stepSize / 2;
            for ($i = 0; $i < $aIsobars; ++$i) {
                $this->isobarValues[$i] = $isobar;
                $isobar += $stepSize;
            }
        }

        if ($aColors !== null && safe_count($aColors) > 0) {
            if (!is_array($aColors)) {
                Util\JpGraphError::RaiseL(28001);
                //'Third argument to Contour must be an array of colors.'
            }

            if (safe_count($aColors) != safe_count($this->isobarValues)) {
                Util\JpGraphError::RaiseL(28002);
                //'Number of colors must equal the number of isobar lines specified';
            }

            $this->isobarColors = $aColors;
        }
    }

    /**
     * Flip the plot around the Y-coordinate. This has the same affect as flipping the input
     * data matrice.
     *
     * @param $aFlg If true the the vertice in input data matrice position (0,0) corresponds to the top left

The type Amenadiel\JpGraph\Plot\If was not found. Maybe you did not declare it correctly or list all dependencies?

     * corner of teh plot otherwise it will correspond to the bottom left corner (a horizontal flip)
     */
    public function SetInvert($aFlg = true)
    {
        $this->invert = $aFlg;
    }

    /**
     * Find the min and max values in the data matrice.
     *
     * @return array(min_value,max_value)
     */
    public function getMinMaxVal()
    {
        $min = $this->dataPoints[0][0];
        $max = $this->dataPoints[0][0];
        for ($i = 0; $i < $this->nbrRows; ++$i) {
            if (($mi = min($this->dataPoints[$i])) < $min) {
                $min = $mi;
            }

            if (($ma = max($this->dataPoints[$i])) > $max) {
                $max = $ma;
            }
        }

        return [$min, $max];
    }

    /**
     * Reset the two matrices that keeps track on where the isobars crosses the
     * horizontal and vertical edges.
     */
    public function resetEdgeMatrices()
    {
        for ($k = 0; $k < 2; ++$k) {
            for ($i = 0; $i <= $this->nbrRows; ++$i) {
                for ($j = 0; $j <= $this->nbrCols; ++$j) {
                    $this->edges[$k][$i][$j] = false;

The property edges does not exist. Although not strictly required by PHP, it is generally a best practice to declare properties explicitly.

                }
            }
        }
    }

    /**
     * Determine if the specified isobar crosses the horizontal edge specified by its row and column.
     *
     * @param $aRow Row index of edge to be checked

The type Amenadiel\JpGraph\Plot\Row was not found. Maybe you did not declare it correctly or list all dependencies?

     * @param $aCol Col index of edge to be checked

The type Amenadiel\JpGraph\Plot\Col was not found. Maybe you did not declare it correctly or list all dependencies?

     * @param $aIsobar Isobar value

The type Amenadiel\JpGraph\Plot\Isobar was not found. Maybe you did not declare it correctly or list all dependencies?

     *
     * @return true if the isobar is crossing this edge
     */
    public function isobarHCrossing($aRow, $aCol, $aIsobar)
    {
        if ($aCol >= $this->nbrCols - 1) {
            Util\JpGraphError::RaiseL(28003, $aCol);
            //'ContourPlot Internal Error: isobarHCrossing: Coloumn index too large (%d)'
        }
        if ($aRow >= $this->nbrRows) {
            Util\JpGraphError::RaiseL(28004, $aRow);
            //'ContourPlot Internal Error: isobarHCrossing: Row index too large (%d)'
        }

        $v1 = $this->dataPoints[$aRow][$aCol];
        $v2 = $this->dataPoints[$aRow][$aCol + 1];

        return ($aIsobar - $v1) * ($aIsobar - $v2) < 0;

The expression return $aIsobar - $v1 * $aIsobar - $v2 < 0 returns the type boolean which is incompatible with the documented return type true.

    }

    /**
     * Determine if the specified isobar crosses the vertical edge specified by its row and column.
     *
     * @param $aRow Row index of edge to be checked
     * @param $aCol Col index of edge to be checked
     * @param $aIsobar Isobar value
     *
     * @return true if the isobar is crossing this edge
     */
    public function isobarVCrossing($aRow, $aCol, $aIsobar)
    {
        if ($aRow >= $this->nbrRows - 1) {
            Util\JpGraphError::RaiseL(28005, $aRow);
            //'isobarVCrossing: Row index too large
        }
        if ($aCol >= $this->nbrCols) {
            Util\JpGraphError::RaiseL(28006, $aCol);
            //'isobarVCrossing: Col index too large
        }

        $v1 = $this->dataPoints[$aRow][$aCol];
        $v2 = $this->dataPoints[$aRow + 1][$aCol];

        return ($aIsobar - $v1) * ($aIsobar - $v2) < 0;

The expression return $aIsobar - $v1 * $aIsobar - $v2 < 0 returns the type boolean which is incompatible with the documented return type true.

    }

    /**
     * Determine all edges, horizontal and vertical that the specified isobar crosses. The crossings
     * are recorded in the two edge matrices.
     *
     * @param $aIsobar The value of the isobar to be checked

The type Amenadiel\JpGraph\Plot\The was not found. Maybe you did not declare it correctly or list all dependencies?

     */
    public function determineIsobarEdgeCrossings($aIsobar)
    {
        $ib = $this->isobarValues[$aIsobar];

        for ($i = 0; $i < $this->nbrRows - 1; ++$i) {
            for ($j = 0; $j < $this->nbrCols - 1; ++$j) {
                $this->edges[HORIZ_EDGE][$i][$j] = $this->isobarHCrossing($i, $j, $ib);

The property edges does not exist. Although not strictly required by PHP, it is generally a best practice to declare properties explicitly.

                $this->edges[VERT_EDGE][$i][$j]  = $this->isobarVCrossing($i, $j, $ib);
            }
        }

        // We now have the bottom and rightmost edges unsearched
        for ($i = 0; $i < $this->nbrRows - 1; ++$i) {
            $this->edges[VERT_EDGE][$i][$j] = $this->isobarVCrossing($i, $this->nbrCols - 1, $ib);

The variable $j does not seem to be defined for all execution paths leading up to this point.

        }
        for ($j = 0; $j < $this->nbrCols - 1; ++$j) {
            $this->edges[HORIZ_EDGE][$i][$j] = $this->isobarHCrossing($this->nbrRows - 1, $j, $ib);
        }
    }

    /**
     * Return the normalized coordinates for the crossing of the specified edge with the specified
     * isobar- The crossing is simpy detrmined with a linear interpolation between the two vertices
     * on each side of the edge and the value of the isobar.
     *
     * @param $aRow Row of edge
     * @param $aCol Column of edge

The type Amenadiel\JpGraph\Plot\Column was not found. Maybe you did not declare it correctly or list all dependencies?

     * @param $aEdgeDir Determine if this is a horizontal or vertical edge

The type Amenadiel\JpGraph\Plot\Determine was not found. Maybe you did not declare it correctly or list all dependencies?

     * @param $ib The isobar value
     * @param mixed $aIsobarVal
     *
     * @return unknown_type

The type Amenadiel\JpGraph\Plot\unknown_type was not found. Maybe you did not declare it correctly or list all dependencies?

     */
    public function getCrossingCoord($aRow, $aCol, $aEdgeDir, $aIsobarVal)
    {
        // In order to avoid numerical problem when two vertices are very close
        // we have to check and avoid dividing by close to zero denumerator.
        if ($aEdgeDir == HORIZ_EDGE) {
            $d = abs($this->dataPoints[$aRow][$aCol] - $this->dataPoints[$aRow][$aCol + 1]);
            if ($d > 0.001) {
                $xcoord = $aCol + abs($aIsobarVal - $this->dataPoints[$aRow][$aCol]) / $d;
            } else {
                $xcoord = $aCol;
            }
            $ycoord = $aRow;
        } else {
            $d = abs($this->dataPoints[$aRow][$aCol] - $this->dataPoints[$aRow + 1][$aCol]);
            if ($d > 0.001) {
                $ycoord = $aRow + abs($aIsobarVal - $this->dataPoints[$aRow][$aCol]) / $d;
            } else {
                $ycoord = $aRow;
            }
            $xcoord = $aCol;
        }
        if ($this->invert) {
            $ycoord = $this->nbrRows - 1 - $ycoord;
        }

        return [$xcoord, $ycoord];

The expression return array($xcoord, $ycoord) returns the type array which is incompatible with the documented return type Amenadiel\JpGraph\Plot\unknown_type.

    }

    /**
     * In order to avoid all kinds of unpleasent extra checks and complex boundary
     * controls for the degenerated case where the contour levels exactly crosses
     * one of the vertices we add a very small delta (0.1%) to the data point value.
     * This has no visible affect but it makes the code sooooo much cleaner.
     */
    public function adjustDataPointValues()
    {
        $ni = safe_count($this->isobarValues);
        for ($k = 0; $k < $ni; ++$k) {
            $ib = $this->isobarValues[$k];
            for ($row = 0; $row < $this->nbrRows - 1; ++$row) {
                for ($col = 0; $col < $this->nbrCols - 1; ++$col) {
                    if (abs($this->dataPoints[$row][$col] - $ib) < 0.0001) {
                        $this->dataPoints[$row][$col] += $this->dataPoints[$row][$col] * 0.001;
                    }
                }
            }
        }
    }

    /**
     * @param $aFlg
     * @param $aBW
     *
     * @return unknown_type
     */
    public function UseHighContrastColor($aFlg = true, $aBW = false)
    {
        $this->highcontrast   = $aFlg;
        $this->highcontrastbw = $aBW;
    }

    /**
     * Calculate suitable colors for each defined isobar.
     */
    public function CalculateColors()
    {
        if ($this->highcontrast) {
            if ($this->highcontrastbw) {
                for ($ib = 0; $ib < $this->nbrIsobars; ++$ib) {
                    $this->isobarColors[$ib] = 'black';
                }
            } else {
                // Use only blue/red scale
                $step = round(255 / ($this->nbrIsobars - 1));
                for ($ib = 0; $ib < $this->nbrIsobars; ++$ib) {
                    $this->isobarColors[$ib] = [$ib * $step, 50, 255 - $ib * $step];
                }
            }
        } else {
            $n    = $this->nbrIsobars;

The assignment to $n is dead and can be removed.

            $v    = 0;
            $step = 1 / ($this->nbrIsobars - 1);
            for ($ib = 0; $ib < $this->nbrIsobars; ++$ib) {
                $this->isobarColors[$ib] = Image\RGB::GetSpectrum($v);
                $v += $step;
            }
        }
    }

    /**
     * This is where the main work is done. For each isobar the crossing of the edges are determined
     * and then each cell is analyzed to find the 0, 2 or 4 crossings. Then the normalized coordinate
     * for the crossings are determined and pushed on to the isobar stack. When the method is finished
     * the $isobarCoord will hold one arrayfor each isobar where all the line segments that makes
     * up the contour plot are stored.
     *
     * @return array( $isobarCoord, $isobarValues, $isobarColors )
     */
    public function getIsobars()
    {
        $this->adjustDataPointValues();

        for ($isobar = 0; $isobar < $this->nbrIsobars; ++$isobar) {
            $ib = $this->isobarValues[$isobar];
            $this->resetEdgeMatrices();
            $this->determineIsobarEdgeCrossings($isobar);
            $this->isobarCoord[$isobar] = [];

            $ncoord = 0;

            for ($row = 0; $row < $this->nbrRows - 1; ++$row) {
                for ($col = 0; $col < $this->nbrCols - 1; ++$col) {
                    // Find out how many crossings around the edges
                    $n = 0;
                    if ($this->edges[HORIZ_EDGE][$row][$col]) {
                        $neigh[$n++] = [$row, $col, HORIZ_EDGE];
                    }

                    if ($this->edges[HORIZ_EDGE][$row + 1][$col]) {
                        $neigh[$n++] = [$row + 1, $col, HORIZ_EDGE];
                    }

                    if ($this->edges[VERT_EDGE][$row][$col]) {
                        $neigh[$n++] = [$row, $col, VERT_EDGE];
                    }

                    if ($this->edges[VERT_EDGE][$row][$col + 1]) {
                        $neigh[$n++] = [$row, $col + 1, VERT_EDGE];
                    }

                    if ($n == 2) {
                        $n1                                    = 0;
                        $n2                                    = 1;
                        $this->isobarCoord[$isobar][$ncoord++] = [
                            $this->getCrossingCoord($neigh[$n1][0], $neigh[$n1][1], $neigh[$n1][2], $ib),

The variable $neigh does not seem to be defined for all execution paths leading up to this point.

                            $this->getCrossingCoord($neigh[$n2][0], $neigh[$n2][1], $neigh[$n2][2], $ib), ];
                    } elseif ($n == 4) {
                        // We must determine how to connect the edges either northwest->southeast or
                        // northeast->southwest. We do that by calculating the imaginary middle value of
                        // the cell by averaging the for corners. This will compared with the value of the
                        // top left corner will help determine the orientation of the ridge/creek
                        $midval = ($this->dataPoints[$row][$col] + $this->dataPoints[$row][$col + 1] + $this->dataPoints[$row + 1][$col] + $this->dataPoints[$row + 1][$col + 1]) / 4;
                        $v      = $this->dataPoints[$row][$col];
                        if ($midval == $ib) {
                            // Orientation "+"
                            $n1 = 0;
                            $n2 = 1;
                            $n3 = 2;
                            $n4 = 3;
                        } elseif (($midval > $ib && $v > $ib) || ($midval < $ib && $v < $ib)) {
                            // Orientation of ridge/valley = "\"
                            $n1 = 0;
                            $n2 = 3;
                            $n3 = 2;
                            $n4 = 1;
                        } elseif (($midval > $ib && $v < $ib) || ($midval < $ib && $v > $ib)) {
                            // Orientation of ridge/valley = "/"
                            $n1 = 0;
                            $n2 = 2;
                            $n3 = 3;
                            $n4 = 1;
                        }

                        $this->isobarCoord[$isobar][$ncoord++] = [
                            $this->getCrossingCoord($neigh[$n1][0], $neigh[$n1][1], $neigh[$n1][2], $ib),

The variable $n1 does not seem to be defined for all execution paths leading up to this point.

                            $this->getCrossingCoord($neigh[$n2][0], $neigh[$n2][1], $neigh[$n2][2], $ib), ];

The variable $n2 does not seem to be defined for all execution paths leading up to this point.

                        $this->isobarCoord[$isobar][$ncoord++] = [
                            $this->getCrossingCoord($neigh[$n3][0], $neigh[$n3][1], $neigh[$n3][2], $ib),

The variable $n3 does not seem to be defined for all execution paths leading up to this point.

                            $this->getCrossingCoord($neigh[$n4][0], $neigh[$n4][1], $neigh[$n4][2], $ib), ];

The variable $n4 does not seem to be defined for all execution paths leading up to this point.

                    }
                }
            }
        }

        if (safe_count($this->isobarColors) == 0) {
            // No manually specified colors. Calculate them automatically.
            $this->CalculateColors();
        }

        return [$this->isobarCoord, $this->isobarValues, $this->isobarColors];
    }
}

// EOF