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total_deformation()   B

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cc 1
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loc 36
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# Copyright (c) 2008-2015 MetPy Developers.
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# Distributed under the terms of the BSD 3-Clause License.
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# SPDX-License-Identifier: BSD-3-Clause
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"""Contains calculation of kinematic parameters (e.g. divergence or vorticity)."""
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from __future__ import division
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import functools
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import warnings
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import numpy as np
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from ..cbook import is_string_like, iterable
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from ..constants import g
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from ..package_tools import Exporter
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from ..units import atleast_2d, concatenate, units
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exporter = Exporter(globals())
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def _gradient(f, *args, **kwargs):
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    """Wrap :func:`numpy.gradient` to handle units."""
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    if len(args) < f.ndim:
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        args = list(args)
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        args.extend([units.Quantity(1., 'dimensionless')] * (f.ndim - len(args)))
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    grad = np.gradient(f, *(a.magnitude for a in args), **kwargs)
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    if f.ndim == 1:
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        return units.Quantity(grad, f.units / args[0].units)
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    return [units.Quantity(g, f.units / dx.units) for dx, g in zip(args, grad)]
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def _stack(arrs):
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    return concatenate([a[np.newaxis] for a in arrs], axis=0)
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def _get_gradients(u, v, dx, dy):
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    """Return derivatives for components to simplify calculating convergence and vorticity."""
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    dudy, dudx = _gradient(u, dy, dx)
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    dvdy, dvdx = _gradient(v, dy, dx)
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    return dudx, dudy, dvdx, dvdy
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def _is_x_first_dim(dim_order):
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    """Determine whether x is the first dimension based on the value of dim_order."""
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    if dim_order is None:
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        warnings.warn('dim_order is using the default setting (currently "xy"). This will '
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                      'change to "yx" in the next version. It is recommended that you '
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                      'specify the appropriate ordering ("xy", "yx") for your data by '
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                      'passing the `dim_order` argument to the calculation.', FutureWarning)
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        dim_order = 'xy'
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    return dim_order == 'xy'
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def _check_and_flip(arr):
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    """Transpose array or list of arrays if they are 2D."""
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    if hasattr(arr, 'ndim'):
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        if arr.ndim >= 2:
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            return arr.T
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        else:
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            return arr
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    elif not is_string_like(arr) and iterable(arr):
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        return tuple(_check_and_flip(a) for a in arr)
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    else:
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        return arr
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def ensure_yx_order(func):
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    """Wrap a function to ensure all array arguments are y, x ordered, based on kwarg."""
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    @functools.wraps(func)
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    def wrapper(*args, **kwargs):
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        # Check what order we're given
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        dim_order = kwargs.pop('dim_order', None)
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        x_first = _is_x_first_dim(dim_order)
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        # If x is the first dimension, flip (transpose) every array within the function args.
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        if x_first:
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            args = tuple(_check_and_flip(arr) for arr in args)
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            for k, v in kwargs:
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                kwargs[k] = _check_and_flip(v)
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        ret = func(*args, **kwargs)
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        # If we flipped on the way in, need to flip on the way out so that output array(s)
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        # match the dimension order of the original input.
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        if x_first:
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            return _check_and_flip(ret)
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        else:
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            return ret
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    # Inject a docstring for the dim_order argument into the function's docstring.
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    dim_order_doc = """
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    dim_order : str or ``None``, optional
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        The ordering of dimensions in passed in arrays. Can be one of ``None``, ``'xy'``,
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        or ``'yx'``. ``'xy'`` indicates that the dimension corresponding to x is the leading
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        dimension, followed by y. ``'yx'`` indicates that x is the last dimension, preceded
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        by y. ``None`` indicates that the default ordering should be assumed,
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        which will change in version 0.6 from 'xy' to 'yx'. Can only be passed as a keyword
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        argument, i.e. func(..., dim_order='xy')."""
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    # Find the first blank line after the start of the parameters section
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    params = wrapper.__doc__.find('Parameters')
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    blank = wrapper.__doc__.find('\n\n', params)
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    wrapper.__doc__ = wrapper.__doc__[:blank] + dim_order_doc + wrapper.__doc__[blank:]
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    return wrapper
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@exporter.export
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@ensure_yx_order
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def v_vorticity(u, v, dx, dy):
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    r"""Calculate the vertical vorticity of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    (M, N) ndarray
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        vertical vorticity
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    See Also
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    --------
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    h_convergence, convergence_vorticity
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    """
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    _, dudy, dvdx, _ = _get_gradients(u, v, dx, dy)
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    return dvdx - dudy
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@exporter.export
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@ensure_yx_order
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def h_convergence(u, v, dx, dy):
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    r"""Calculate the horizontal convergence of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    (M, N) ndarray
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        The horizontal convergence
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    See Also
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    --------
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    v_vorticity, convergence_vorticity
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    """
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    dudx, _, _, dvdy = _get_gradients(u, v, dx, dy)
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    return dudx + dvdy
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@exporter.export
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@ensure_yx_order
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def convergence_vorticity(u, v, dx, dy):
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    r"""Calculate the horizontal convergence and vertical vorticity of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    convergence, vorticity : tuple of (M, N) ndarrays
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        The horizontal convergence and vertical vorticity, respectively
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    See Also
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    --------
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    v_vorticity, h_convergence
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    Notes
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    -----
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    This is a convenience function that will do less work than calculating
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    the horizontal convergence and vertical vorticity separately.
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    """
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    dudx, dudy, dvdx, dvdy = _get_gradients(u, v, dx, dy)
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    return dudx + dvdy, dvdx - dudy
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@exporter.export
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@ensure_yx_order
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def shearing_deformation(u, v, dx, dy):
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    r"""Calculate the shearing deformation of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    (M, N) ndarray
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        Shearing Deformation
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    See Also
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    --------
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    stretching_convergence, shearing_stretching_deformation
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    """
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    _, dudy, dvdx, _ = _get_gradients(u, v, dx, dy)
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    return dvdx + dudy
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@exporter.export
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@ensure_yx_order
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def stretching_deformation(u, v, dx, dy):
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    r"""Calculate the stretching deformation of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    (M, N) ndarray
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        Stretching Deformation
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    See Also
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    --------
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    shearing_deformation, shearing_stretching_deformation
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    """
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    dudx, _, _, dvdy = _get_gradients(u, v, dx, dy)
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    return dudx - dvdy
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@exporter.export
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@ensure_yx_order
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def shearing_stretching_deformation(u, v, dx, dy):
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    r"""Calculate the horizontal shearing and stretching deformation of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    shearing, strectching : tuple of (M, N) ndarrays
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        The horizontal shearing and stretching deformation, respectively
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    See Also
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    --------
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    shearing_deformation, stretching_deformation
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    Notes
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    -----
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    This is a convenience function that will do less work than calculating
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    the shearing and streching deformation terms separately.
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    """
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    dudx, dudy, dvdx, dvdy = _get_gradients(u, v, dx, dy)
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    return dvdx + dudy, dudx - dvdy
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@exporter.export
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@ensure_yx_order
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def total_deformation(u, v, dx, dy):
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    r"""Calculate the horizontal total deformation of the horizontal wind.
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    The grid must have a constant spacing in each direction.
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    Parameters
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    ----------
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    u : (M, N) ndarray
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        x component of the wind
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    v : (M, N) ndarray
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        y component of the wind
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    dx : float
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        The grid spacing in the x-direction
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    dy : float
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        The grid spacing in the y-direction
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    Returns
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    -------
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    (M, N) ndarray
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        Total Deformation
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    See Also
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    --------
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    shearing_deformation, stretching_deformation, shearing_stretching_deformation
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    Notes
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    -----
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    This is a convenience function that will do less work than calculating
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    the shearing and streching deformation terms separately and calculating the
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    total deformation "by hand".
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    """
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    dudx, dudy, dvdx, dvdy = _get_gradients(u, v, dx, dy)
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    return np.sqrt((dvdx + dudy)**2 + (dudx - dvdy)**2)
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@exporter.export
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@ensure_yx_order
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def advection(scalar, wind, deltas):
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    r"""Calculate the advection of a scalar field by the wind.
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    The order of the dimensions of the arrays must match the order in which
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    the wind components are given.  For example, if the winds are given [u, v],
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    then the scalar and wind arrays must be indexed as x,y (which puts x as the
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    rows, not columns).
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    Parameters
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    ----------
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    scalar : N-dimensional array
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        Array (with N-dimensions) with the quantity to be advected.
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    wind : sequence of arrays
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        Length N sequence of N-dimensional arrays.  Represents the flow,
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        with a component of the wind in each dimension.  For example, for
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        horizontal advection, this could be a list: [u, v], where u and v
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        are each a 2-dimensional array.
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    deltas : sequence
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        A (length N) sequence containing the grid spacing in each dimension.
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    Returns
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    -------
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    N-dimensional array
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        An N-dimensional array containing the advection at all grid points.
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    """
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    # This allows passing in a list of wind components or an array.
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    wind = _stack(wind)
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    # If we have more than one component, we need to reverse the order along the first
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    # dimension so that the wind components line up with the
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    # order of the gradients from the ..., y, x ordered array.
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    if wind.ndim > scalar.ndim:
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        wind = wind[::-1]
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    # Gradient returns a list of derivatives along each dimension. We convert
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    # this to an array with dimension as the first index. Reverse the deltas to line up
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    # with the order of the dimensions.
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    grad = _stack(_gradient(scalar, *deltas[::-1]))
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    # Make them be at least 2D (handling the 1D case) so that we can do the
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    # multiply and sum below
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    grad, wind = atleast_2d(grad, wind)
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    return (-grad * wind).sum(axis=0)
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@exporter.export
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@ensure_yx_order
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def geostrophic_wind(heights, f, dx, dy):
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    r"""Calculate the geostrophic wind given from the heights or geopotential.
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    Parameters
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    ----------
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    heights : (M, N) ndarray
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        The height field, with either leading dimensions of (x, y) or trailing dimensions
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        of (y, x), depending on the value of ``dim_order``.
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    f : array_like
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        The coriolis parameter.  This can be a scalar to be applied
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        everywhere or an array of values.
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    dx : scalar
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        The grid spacing in the x-direction
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    dy : scalar
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        The grid spacing in the y-direction
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    Returns
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    -------
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    A 2-item tuple of arrays
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        A tuple of the u-component and v-component of the geostrophic wind.
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    """
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    if heights.dimensionality['[length]'] == 2.0:
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        norm_factor = 1. / f
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    else:
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        norm_factor = g / f
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    # If heights has more than 2 dimensions, we need to pass in some dummy
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    # grid deltas so that we can still use np.gradient. It may be better to
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    # to loop in this case, but that remains to be done.
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    deltas = [dy, dx]
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    if heights.ndim > 2:
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        deltas = [units.Quantity(1., units.m)] * (heights.ndim - 2) + deltas
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    grad = _gradient(heights, *deltas)
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    dy, dx = grad[-2:]  # Throw away unused gradient components
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    return -norm_factor * dy, norm_factor * dx
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