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# -*- coding: utf-8 -*- |
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""" |
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This file contains the Qudi GUI module for ODMR control. |
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Qudi is free software: you can redistribute it and/or modify |
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it under the terms of the GNU General Public License as published by |
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the Free Software Foundation, either version 3 of the License, or |
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(at your option) any later version. |
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Qudi is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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You should have received a copy of the GNU General Public License |
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along with Qudi. If not, see <http://www.gnu.org/licenses/>. |
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Copyright (c) the Qudi Developers. See the COPYRIGHT.txt file at the |
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top-level directory of this distribution and at <https://github.com/Ulm-IQO/qudi/> |
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""" |
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from qtpy import QtCore |
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from qtpy import QtWidgets |
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from qtpy import uic |
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import pyqtgraph as pg |
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import numpy as np |
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import os |
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from gui.guibase import GUIBase |
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from gui.guiutils import ColorBar |
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from gui.colordefs import ColorScaleInferno |
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from gui.colordefs import QudiPalettePale as palette |
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from gui.fitsettings import FitSettingsWidget |
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from core.util import units |
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class ODMRMainWindow(QtWidgets.QMainWindow): |
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def __init__(self): |
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# Get the path to the *.ui file |
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this_dir = os.path.dirname(__file__) |
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ui_file = os.path.join(this_dir, 'ui_odmrgui.ui') |
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# Load it |
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super(ODMRMainWindow, self).__init__() |
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uic.loadUi(ui_file, self) |
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self.show() |
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class ODMRSettingDialog(QtWidgets.QDialog): |
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def __init__(self): |
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# Get the path to the *.ui file |
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this_dir = os.path.dirname(__file__) |
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ui_file = os.path.join(this_dir, 'ui_odmr_settings.ui') |
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# Load it |
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super(ODMRSettingDialog, self).__init__() |
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uic.loadUi(ui_file, self) |
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class ODMRGui(GUIBase): |
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""" |
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This is the GUI Class for ODMR |
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""" |
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_modclass = 'ODMRGui' |
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_modtype = 'gui' |
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# declare connectors |
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_in = {'odmrlogic1': 'ODMRLogic', |
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'savelogic': 'SaveLogic'} |
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sigStartODMRScan = QtCore.Signal() |
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sigStopODMRScan = QtCore.Signal() |
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sigContinueODMRScan = QtCore.Signal() |
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sigClearPlots = QtCore.Signal() |
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sigMWOn = QtCore.Signal() |
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sigMWOff = QtCore.Signal() |
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sigMWPowerChanged = QtCore.Signal(float) |
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sigMWFreqChanged = QtCore.Signal(float) |
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def __init__(self, config, **kwargs): |
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super().__init__(config=config, **kwargs) |
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self.log.info('The following configuration was found.') |
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# checking for the right configuration |
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for key in config.keys(): |
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self.log.info('{0}: {1}'.format(key, config[key])) |
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def on_activate(self, e=None): |
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""" Definition, configuration and initialisation of the ODMR GUI. |
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@param object e: Fysom.event object from Fysom class. |
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An object created by the state machine module Fysom, |
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which is connected to a specific event (have a look in |
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the Base Class). This object contains the passed event, |
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the state before the event happened and the destination |
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of the state which should be reached after the event |
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had happened. |
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This init connects all the graphic modules, which were created in the |
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*.ui file and configures the event handling between the modules. |
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""" |
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self._odmr_logic = self.get_in_connector('odmrlogic1') |
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self._save_logic = self.get_in_connector('savelogic') |
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# Use the inherited class 'Ui_ODMRGuiUI' to create now the |
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# GUI element: |
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self._mw = ODMRMainWindow() |
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self._sd = ODMRSettingDialog() |
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# Adjust range of scientific spinboxes above what is possible in Qt Designer |
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self._mw.frequency_DoubleSpinBox.setMaximum(100e9) |
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self._mw.start_freq_DoubleSpinBox.setMaximum(100e9) |
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self._mw.step_freq_DoubleSpinBox.setMaximum(100e9) |
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self._mw.stop_freq_DoubleSpinBox.setMaximum(100e9) |
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# Add save file tag input box |
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self._mw.save_tag_LineEdit = QtWidgets.QLineEdit(self._mw) |
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self._mw.save_tag_LineEdit.setMaximumWidth(200) |
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self._mw.save_tag_LineEdit.setToolTip( |
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'Enter a nametag which will be\nadded to the filename.') |
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self._mw.save_ToolBar.addWidget(self._mw.save_tag_LineEdit) |
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# add a clear button to clear the ODMR plots: |
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self._mw.clear_odmr_PushButton = QtWidgets.QPushButton(self._mw) |
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self._mw.clear_odmr_PushButton.setText('Clear ODMR') |
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self._mw.clear_odmr_PushButton.setToolTip( |
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'Clear the plots of the\ncurrent ODMR measurements.') |
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self._mw.clear_odmr_PushButton.setEnabled(False) |
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self._mw.save_ToolBar.addWidget(self._mw.clear_odmr_PushButton) |
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self.sigClearPlots.connect(self._odmr_logic.clear_odmr_plots) |
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# Get the image from the logic |
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self.odmr_matrix_image = pg.ImageItem(self._odmr_logic.ODMR_plot_xy.transpose()) |
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self.odmr_matrix_image.setRect( |
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QtCore.QRectF( |
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self._odmr_logic.mw_start, |
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0, |
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self._odmr_logic.mw_stop - self._odmr_logic.mw_start, |
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self._odmr_logic.number_of_lines |
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)) |
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self.odmr_image = pg.PlotDataItem( |
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self._odmr_logic.ODMR_plot_x, |
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self._odmr_logic.ODMR_plot_y, |
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pen=pg.mkPen(palette.c1, style=QtCore.Qt.DotLine), |
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symbol='o', |
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symbolPen=palette.c1, |
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symbolBrush=palette.c1, |
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symbolSize=7 |
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) |
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self.odmr_fit_image = pg.PlotDataItem( |
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self._odmr_logic.ODMR_fit_x, |
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self._odmr_logic.ODMR_fit_y, |
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pen=pg.mkPen(palette.c2) |
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) |
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# Add the display item to the xy and xz VieWidget, which was defined in |
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# the UI file. |
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self._mw.odmr_PlotWidget.addItem(self.odmr_image) |
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self._mw.odmr_PlotWidget.setLabel(axis='left', text='Counts', |
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units='Counts/s') |
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self._mw.odmr_PlotWidget.setLabel(axis='bottom', text='Frequency', |
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units='Hz') |
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#self._mw.odmr_PlotWidget.addItem(self.odmr_fit_image) |
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self._mw.odmr_matrix_PlotWidget.addItem(self.odmr_matrix_image) |
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self._mw.odmr_matrix_PlotWidget.setLabel(axis='left', |
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text='Matrix Lines', |
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units='#') |
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self._mw.odmr_matrix_PlotWidget.setLabel(axis='bottom', text='Frequency', |
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units='Hz') |
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self._mw.odmr_PlotWidget.showGrid(x=True, y=True, alpha=0.8) |
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# Get the colorscales at set LUT |
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my_colors = ColorScaleInferno() |
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self.odmr_matrix_image.setLookupTable(my_colors.lut) |
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# Set the state button as ready button as default setting. |
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# self._mw.idle_StateWidget.click() |
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# Configuration of the comboWidget |
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self._mw.mode_ComboBox.addItem('Off') |
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self._mw.mode_ComboBox.addItem('CW') |
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fit_functions = self._odmr_logic.get_fit_functions() |
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self._mw.fit_methods_ComboBox.clear() |
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self._mw.fit_methods_ComboBox.addItems(fit_functions) |
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######################################################################## |
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## Configuration of the Colorbar ## |
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######################################################################## |
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self.odmr_cb = ColorBar(my_colors.cmap_normed, 100, 0, 100000) |
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#adding colorbar to ViewWidget |
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self._mw.odmr_cb_PlotWidget.addItem(self.odmr_cb) |
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self._mw.odmr_cb_PlotWidget.hideAxis('bottom') |
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self._mw.odmr_cb_PlotWidget.hideAxis('left') |
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self._mw.odmr_cb_PlotWidget.setLabel('right', 'Fluorescence', units='counts/s') |
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# Connect the buttons and inputs for the odmr colorbar |
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self._mw.odmr_cb_manual_RadioButton.clicked.connect(self.refresh_matrix) |
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self._mw.odmr_cb_centiles_RadioButton.clicked.connect(self.refresh_matrix) |
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######################################################################## |
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## Configuration of the various display Widgets ## |
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######################################################################## |
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# Take the default values from logic: |
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self._mw.frequency_DoubleSpinBox.setValue(self._odmr_logic.mw_frequency) |
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self._mw.start_freq_DoubleSpinBox.setValue(self._odmr_logic.mw_start) |
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self._mw.step_freq_DoubleSpinBox.setValue(self._odmr_logic.mw_step) |
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self._mw.step_freq_DoubleSpinBox.setOpts(minStep=1.0) # set the minimal step to 1Hz. |
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self._mw.stop_freq_DoubleSpinBox.setValue(self._odmr_logic.mw_stop) |
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self._mw.power_DoubleSpinBox.setValue(self._odmr_logic.mw_power) |
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self._mw.power_DoubleSpinBox.setOpts(minStep=0.1) |
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self._mw.runtime_DoubleSpinBox.setValue(self._odmr_logic.run_time) |
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self._mw.elapsed_time_DisplayWidget.display(int(self._odmr_logic.elapsed_time)) |
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self._sd.matrix_lines_SpinBox.setValue(self._odmr_logic.number_of_lines) |
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self._sd.clock_frequency_DoubleSpinBox.setValue(self._odmr_logic._clock_frequency) |
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self._sd.fit_tabs = {} |
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for name, model in self._odmr_logic.fit_models.items(): |
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try: |
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self._sd.fit_tabs[name] = FitSettingsWidget(model[1]) |
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except: |
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self.log.warning('Could not load fitmodel {0}'.format(name)) |
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else: |
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self._sd.tabWidget.addTab(self._sd.fit_tabs[name], name) |
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# Update the inputed/displayed numbers if return key is hit: |
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# If the attribute setKeyboardTracking is set in a SpinBox or |
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# DoubleSpinBox the valueChanged method will actually hold on the signal |
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# until the return key is pressed which is pretty useful ;) |
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# self._mw.frequency_DoubleSpinBox.setKeyboardTracking(False) |
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# Update the inputed/displayed numbers if the cursor has left the field: |
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self._mw.frequency_DoubleSpinBox.editingFinished.connect(self.change_frequency) |
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self._mw.start_freq_DoubleSpinBox.editingFinished.connect(self.change_start_freq) |
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self._mw.step_freq_DoubleSpinBox.editingFinished.connect(self.change_step_freq) |
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self._mw.stop_freq_DoubleSpinBox.editingFinished.connect(self.change_stop_freq) |
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self._mw.power_DoubleSpinBox.editingFinished.connect(self.change_power) |
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self._mw.runtime_DoubleSpinBox.editingFinished.connect(self.change_runtime) |
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self._mw.odmr_cb_max_DoubleSpinBox.valueChanged.connect(self.refresh_matrix) |
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self._mw.odmr_cb_min_DoubleSpinBox.valueChanged.connect(self.refresh_matrix) |
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self._mw.odmr_cb_high_percentile_DoubleSpinBox.valueChanged.connect(self.refresh_matrix) |
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self._mw.odmr_cb_low_percentile_DoubleSpinBox.valueChanged.connect(self.refresh_matrix) |
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######################################################################## |
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## Connect signals ## |
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######################################################################## |
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# Connect the RadioButtons and connect to the events if they are clicked: |
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self._mw.action_run_stop.toggled.connect(self.run_stop) |
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self._mw.action_resume_odmr.toggled.connect(self.resume_odmr) |
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self._mw.action_Save.triggered.connect(self.save_data) |
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self.sigStartODMRScan.connect(self._odmr_logic.start_odmr_scan) |
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self.sigStopODMRScan.connect(self._odmr_logic.stop_odmr_scan) |
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self.sigContinueODMRScan.connect(self._odmr_logic.continue_odmr_scan) |
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self.sigMWOn.connect(self._odmr_logic.MW_on) |
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self.sigMWOff.connect(self._odmr_logic.MW_off) |
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self.sigMWFreqChanged.connect(self._odmr_logic.set_frequency) |
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self.sigMWPowerChanged.connect(self._odmr_logic.set_power) |
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# react on an axis change in the logic by adapting the display: |
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self._odmr_logic.sigODMRMatrixAxesChanged.connect(self.update_matrix_axes) |
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# connect the clear button: |
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self._mw.clear_odmr_PushButton.clicked.connect(self.clear_odmr_plots_clicked) |
|
283
|
|
|
|
|
284
|
|
|
self._odmr_logic.sigOdmrPlotUpdated.connect(self.refresh_plot) |
|
285
|
|
|
self._odmr_logic.sigOdmrFitUpdated.connect(self.refresh_plot_fit) |
|
286
|
|
|
self._odmr_logic.sigOdmrMatrixUpdated.connect(self.refresh_matrix) |
|
287
|
|
|
self._odmr_logic.sigOdmrElapsedTimeChanged.connect(self.refresh_elapsedtime) |
|
288
|
|
|
# connect settings signals |
|
289
|
|
|
self._mw.action_Settings.triggered.connect(self.menu_settings) |
|
290
|
|
|
self._sd.accepted.connect(self.update_settings) |
|
291
|
|
|
self._sd.rejected.connect(self.reject_settings) |
|
292
|
|
|
self._sd.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).clicked.connect(self.update_settings) |
|
293
|
|
|
self.reject_settings() |
|
294
|
|
|
# Connect stop odmr |
|
295
|
|
|
self._odmr_logic.sigOdmrStarted.connect(self.odmr_started) |
|
296
|
|
|
self._odmr_logic.sigOdmrStopped.connect(self.odmr_stopped) |
|
297
|
|
|
# Combo Widget |
|
298
|
|
|
self._mw.mode_ComboBox.activated[str].connect(self.mw_stop) |
|
299
|
|
|
self._mw.fit_methods_ComboBox.activated[str].connect(self.update_fit_variable) |
|
300
|
|
|
# Push Buttons |
|
301
|
|
|
self._mw.do_fit_PushButton.clicked.connect(self.update_fit) |
|
302
|
|
|
|
|
303
|
|
|
# let the gui react on the signals from the GUI |
|
304
|
|
|
self._odmr_logic.sigMicrowaveCWModeChanged.connect(self.update_cw_display) |
|
305
|
|
|
self._odmr_logic.sigMicrowaveListModeChanged.connect(self.update_run_stop_display) |
|
306
|
|
|
|
|
307
|
|
|
# Show the Main ODMR GUI: |
|
308
|
|
|
self._mw.show() |
|
309
|
|
|
|
|
310
|
|
|
def on_deactivate(self, e): |
|
311
|
|
|
""" Reverse steps of activation |
|
312
|
|
|
|
|
313
|
|
|
@param object e: Fysom.event object from Fysom class. A more detailed |
|
314
|
|
|
explanation can be found in the method initUI. |
|
315
|
|
|
|
|
316
|
|
|
@return int: error code (0:OK, -1:error) |
|
317
|
|
|
""" |
|
318
|
|
|
self._mw.close() |
|
319
|
|
|
return 0 |
|
320
|
|
|
|
|
321
|
|
|
def show(self): |
|
322
|
|
|
"""Make window visible and put it above all other windows. """ |
|
323
|
|
|
QtWidgets.QMainWindow.show(self._mw) |
|
324
|
|
|
self._mw.activateWindow() |
|
325
|
|
|
self._mw.raise_() |
|
326
|
|
|
|
|
327
|
|
|
def run_stop(self, is_checked): |
|
328
|
|
|
""" Manages what happens if odmr scan is started/stopped. """ |
|
329
|
|
|
if is_checked: |
|
330
|
|
|
# change the axes appearance according to input values: |
|
331
|
|
|
self.sigStopODMRScan.emit() |
|
332
|
|
|
self.sigStartODMRScan.emit() |
|
333
|
|
|
self._mw.action_run_stop.setEnabled(False) |
|
334
|
|
|
self._mw.action_resume_odmr.setEnabled(False) |
|
335
|
|
|
self._mw.odmr_PlotWidget.removeItem(self.odmr_fit_image) |
|
336
|
|
|
|
|
337
|
|
|
# during scan, enable the clear plot possibility. |
|
338
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(True) |
|
339
|
|
|
else: |
|
340
|
|
|
self.sigStopODMRScan.emit() |
|
341
|
|
|
self._mw.action_run_stop.setEnabled(False) |
|
342
|
|
|
self._mw.action_resume_odmr.setEnabled(False) |
|
343
|
|
|
# Disable the clear functionality since that is not needed if no |
|
344
|
|
|
# scan is running: |
|
345
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(False) |
|
346
|
|
|
|
|
347
|
|
|
def update_cw_display(self, cw_on): |
|
348
|
|
|
""" Update the display for the cw state of the microwave. |
|
349
|
|
|
|
|
350
|
|
|
@param bool cw_on: for True the mw on display will be shown, otherwise |
|
351
|
|
|
mw off will be displayed. |
|
352
|
|
|
""" |
|
353
|
|
|
if cw_on: |
|
354
|
|
|
# # prevent any triggering, which results from changing the state of |
|
355
|
|
|
# # the combobox: |
|
356
|
|
|
# self._mw.mode_ComboBox.blockSignals(True) |
|
357
|
|
|
text = 'CW' |
|
358
|
|
|
else: |
|
359
|
|
|
text = 'Off' |
|
360
|
|
|
|
|
361
|
|
|
index = self._mw.mode_ComboBox.findText(text, QtCore.Qt.MatchFixedString) |
|
362
|
|
|
if index >= 0: |
|
363
|
|
|
self._mw.mode_ComboBox.setCurrentIndex(index) |
|
364
|
|
|
else: |
|
365
|
|
|
self.log.warning('No proper state to display was found in the combobox!') |
|
366
|
|
|
|
|
367
|
|
|
def update_run_stop_display(self, run_odmr): |
|
368
|
|
|
""" Update the display for the odmr measurement. |
|
369
|
|
|
|
|
370
|
|
|
@param bool run_odmr: True indicates that the measurement is running and |
|
371
|
|
|
False that it is stopped. |
|
372
|
|
|
""" |
|
373
|
|
|
|
|
374
|
|
|
if run_odmr: |
|
375
|
|
|
self._mw.action_resume_odmr.setEnabled(False) |
|
376
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(True) |
|
377
|
|
|
else: |
|
378
|
|
|
self._mw.action_resume_odmr.setEnabled(True) |
|
379
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(False) |
|
380
|
|
|
|
|
381
|
|
|
def resume_odmr(self, is_checked): |
|
382
|
|
|
if is_checked: |
|
383
|
|
|
self.sigStopODMRScan.emit() |
|
384
|
|
|
self.sigContinueODMRScan.emit() |
|
385
|
|
|
self._mw.action_run_stop.setEnabled(False) |
|
386
|
|
|
|
|
387
|
|
|
# during scan, enable the clear plot possibility. |
|
388
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(True) |
|
389
|
|
|
else: |
|
390
|
|
|
self.sigStopODMRScan.emit() |
|
391
|
|
|
self._mw.action_run_stop.setEnabled(True) |
|
392
|
|
|
# Disable the clear functionality since that is not needed if no |
|
393
|
|
|
# scan is running: |
|
394
|
|
|
self._mw.clear_odmr_PushButton.setEnabled(False) |
|
395
|
|
|
|
|
396
|
|
|
def odmr_started(self): |
|
397
|
|
|
""" Switch the run/stop button to stop after receiving an odmsStarted |
|
398
|
|
|
signal """ |
|
399
|
|
|
self._mw.action_run_stop.setEnabled(True) |
|
400
|
|
|
self._mw.action_resume_odmr.setEnabled(False) |
|
401
|
|
|
|
|
402
|
|
|
def odmr_stopped(self): |
|
403
|
|
|
""" Switch the run/stop button to stop after receiving an odmr_stoped |
|
404
|
|
|
signal """ |
|
405
|
|
|
self._mw.action_run_stop.setChecked(False) |
|
406
|
|
|
self._mw.action_resume_odmr.setChecked(False) |
|
407
|
|
|
self._mw.action_run_stop.setEnabled(True) |
|
408
|
|
|
self._mw.action_resume_odmr.setEnabled(True) |
|
409
|
|
|
|
|
410
|
|
|
def clear_odmr_plots_clicked(self): |
|
411
|
|
|
""" Clear the ODMR plots. """ |
|
412
|
|
|
self.sigClearPlots.emit() |
|
413
|
|
|
|
|
414
|
|
|
def menu_settings(self): |
|
415
|
|
|
""" Open the settings menu """ |
|
416
|
|
|
self._sd.exec_() |
|
417
|
|
|
|
|
418
|
|
|
def refresh_plot(self): |
|
419
|
|
|
""" Refresh the xy-plot image """ |
|
420
|
|
|
self.odmr_image.setData(self._odmr_logic.ODMR_plot_x, |
|
421
|
|
|
self._odmr_logic.ODMR_plot_y) |
|
422
|
|
|
|
|
423
|
|
|
def refresh_plot_fit(self): |
|
424
|
|
|
""" Refresh the xy fit plot image. """ |
|
425
|
|
|
|
|
426
|
|
|
if not self._mw.fit_methods_ComboBox.currentText() == 'No Fit': |
|
427
|
|
|
self.odmr_fit_image.setData(x=self._odmr_logic.ODMR_fit_x, |
|
428
|
|
|
y=self._odmr_logic.ODMR_fit_y) |
|
429
|
|
|
else: |
|
430
|
|
|
if self.odmr_fit_image in self._mw.odmr_PlotWidget.listDataItems(): |
|
431
|
|
|
self._mw.odmr_PlotWidget.removeItem(self.odmr_fit_image) |
|
432
|
|
|
|
|
433
|
|
|
def refresh_matrix(self): |
|
434
|
|
|
""" Refresh the xy-matrix image """ |
|
435
|
|
|
odmr_image_data = self._odmr_logic.ODMR_plot_xy.transpose() |
|
436
|
|
|
|
|
437
|
|
|
cb_range = self.get_matrix_cb_range() |
|
438
|
|
|
|
|
439
|
|
|
# Now update image with new color scale, and update colorbar |
|
440
|
|
|
self.odmr_matrix_image.setImage(image=odmr_image_data, |
|
441
|
|
|
levels=(cb_range[0], cb_range[1]) |
|
442
|
|
|
) |
|
443
|
|
|
self.refresh_odmr_colorbar() |
|
444
|
|
|
|
|
445
|
|
|
def update_matrix_axes(self): |
|
446
|
|
|
""" Adjust the x and y axes in the image according to the input. """ |
|
447
|
|
|
|
|
448
|
|
|
self.odmr_matrix_image.setRect( |
|
449
|
|
|
QtCore.QRectF( |
|
450
|
|
|
self._odmr_logic.mw_start, |
|
451
|
|
|
0, |
|
452
|
|
|
self._odmr_logic.mw_stop - self._odmr_logic.mw_start, |
|
453
|
|
|
self._odmr_logic.number_of_lines |
|
454
|
|
|
)) |
|
455
|
|
|
|
|
456
|
|
|
def refresh_odmr_colorbar(self): |
|
457
|
|
|
""" Update the colorbar to a new scaling. |
|
458
|
|
|
|
|
459
|
|
|
Calls the refresh method from colorbar. |
|
460
|
|
|
""" |
|
461
|
|
|
cb_range = self.get_matrix_cb_range() |
|
462
|
|
|
self.odmr_cb.refresh_colorbar(cb_range[0], cb_range[1]) |
|
463
|
|
|
|
|
464
|
|
|
self._mw.odmr_cb_PlotWidget.update() # TODO: Is this necessary? It is not in refresh_xy_colorbar in confocal gui |
|
465
|
|
|
|
|
466
|
|
|
def get_matrix_cb_range(self): |
|
467
|
|
|
""" Determines the cb_min and cb_max values for the matrix plot |
|
468
|
|
|
""" |
|
469
|
|
|
matrix_image = self.odmr_matrix_image.image |
|
470
|
|
|
|
|
471
|
|
|
# If "Manual" is checked or the image is empty (all zeros), then take manual cb range. |
|
472
|
|
|
if self._mw.odmr_cb_manual_RadioButton.isChecked() or np.max(matrix_image) == 0.0: |
|
473
|
|
|
cb_min = self._mw.odmr_cb_min_DoubleSpinBox.value() |
|
474
|
|
|
cb_max = self._mw.odmr_cb_max_DoubleSpinBox.value() |
|
475
|
|
|
|
|
476
|
|
|
# Otherwise, calculate cb range from percentiles. |
|
477
|
|
|
else: |
|
478
|
|
|
# Exclude any zeros (which are typically due to unfinished scan) |
|
479
|
|
|
matrix_image_nonzero = matrix_image[np.nonzero(matrix_image)] |
|
480
|
|
|
|
|
481
|
|
|
# Read centile range |
|
482
|
|
|
low_centile = self._mw.odmr_cb_low_percentile_DoubleSpinBox.value() |
|
483
|
|
|
high_centile = self._mw.odmr_cb_high_percentile_DoubleSpinBox.value() |
|
484
|
|
|
|
|
485
|
|
|
cb_min = np.percentile(matrix_image_nonzero, low_centile) |
|
486
|
|
|
cb_max = np.percentile(matrix_image_nonzero, high_centile) |
|
487
|
|
|
|
|
488
|
|
|
cb_range = [cb_min, cb_max] |
|
489
|
|
|
return cb_range |
|
490
|
|
|
|
|
491
|
|
|
def refresh_elapsedtime(self): |
|
492
|
|
|
""" Show current elapsed measurement time """ |
|
493
|
|
|
self._mw.elapsed_time_DisplayWidget.display(int(self._odmr_logic.elapsed_time)) |
|
494
|
|
|
|
|
495
|
|
View Code Duplication |
def update_settings(self): |
|
|
|
|
|
|
496
|
|
|
""" Write the new settings from the gui to the file. """ |
|
497
|
|
|
self._odmr_logic.number_of_lines = self._sd.matrix_lines_SpinBox.value() |
|
498
|
|
|
self._odmr_logic.set_clock_frequency(self._sd.clock_frequency_DoubleSpinBox.value()) |
|
499
|
|
|
self._odmr_logic.safeRawData = self._sd.save_raw_data_CheckBox.isChecked() |
|
500
|
|
|
for name, tab in self._sd.fit_tabs.items(): |
|
501
|
|
|
self._odmr_logic.use_custom_params[name] = tab.updateFitSettings( |
|
502
|
|
|
self._odmr_logic.fit_models[name][1]) |
|
503
|
|
|
|
|
504
|
|
|
def reject_settings(self): |
|
505
|
|
|
""" Keep the old settings and restores the old settings in the gui. """ |
|
506
|
|
|
self._sd.matrix_lines_SpinBox.setValue(self._odmr_logic.number_of_lines) |
|
507
|
|
|
self._sd.clock_frequency_DoubleSpinBox.setValue(self._odmr_logic._clock_frequency) |
|
508
|
|
|
self._sd.save_raw_data_CheckBox.setChecked(self._odmr_logic.safeRawData) |
|
509
|
|
|
for name, tab in self._sd.fit_tabs.items(): |
|
510
|
|
|
tab.keepFitSettings( |
|
511
|
|
|
self._odmr_logic.fit_models[name][1], |
|
512
|
|
|
self._odmr_logic.use_custom_params[name]) |
|
513
|
|
|
|
|
514
|
|
|
def update_fit_variable(self, txt): |
|
515
|
|
|
""" Set current fit function """ |
|
516
|
|
|
self._odmr_logic.current_fit_function = txt |
|
517
|
|
|
|
|
518
|
|
|
def update_fit(self): |
|
519
|
|
|
""" Do the configured fit and show it in the sum plot """ |
|
520
|
|
|
x_data_fit, y_data_fit, fit_param, fit_result = self._odmr_logic.do_fit(fit_function=self._odmr_logic.current_fit_function) |
|
521
|
|
|
# The fit signal was already emitted in the logic, so there is no need |
|
522
|
|
|
# to set the fit data |
|
523
|
|
|
|
|
524
|
|
|
# check which Fit method is used and remove or add again the |
|
525
|
|
|
# odmr_fit_image, check also whether a odmr_fit_image already exists. |
|
526
|
|
|
if self._mw.fit_methods_ComboBox.currentText() == 'No Fit': |
|
527
|
|
|
if self.odmr_fit_image in self._mw.odmr_PlotWidget.listDataItems(): |
|
528
|
|
|
self._mw.odmr_PlotWidget.removeItem(self.odmr_fit_image) |
|
529
|
|
|
else: |
|
530
|
|
|
if self.odmr_fit_image not in self._mw.odmr_PlotWidget.listDataItems(): |
|
531
|
|
|
self._mw.odmr_PlotWidget.addItem(self.odmr_fit_image) |
|
532
|
|
|
|
|
533
|
|
|
self._mw.odmr_PlotWidget.getViewBox().updateAutoRange() |
|
534
|
|
|
self._mw.odmr_fit_results_DisplayWidget.clear() |
|
535
|
|
|
|
|
536
|
|
|
formated_results = units.create_formatted_output(fit_param) |
|
537
|
|
|
|
|
538
|
|
|
self._mw.odmr_fit_results_DisplayWidget.setPlainText(formated_results) |
|
539
|
|
|
|
|
540
|
|
|
def _format_param_dict(self, param_dict): |
|
541
|
|
|
""" Create from the passed param_dict a proper display of the parameters. |
|
542
|
|
|
|
|
543
|
|
|
@param dict param_dict: the dictionary with keys being the names of the |
|
544
|
|
|
parameter and items being values/parameters. |
|
545
|
|
|
|
|
546
|
|
|
@return: |
|
547
|
|
|
""" |
|
548
|
|
|
pass |
|
549
|
|
|
|
|
550
|
|
|
def mw_stop(self, txt): |
|
551
|
|
|
""" Stop frequency sweep and change to CW of off""" |
|
552
|
|
|
if txt == 'Off': |
|
553
|
|
|
self.sigMWOff.emit() |
|
554
|
|
|
if txt == 'CW': |
|
555
|
|
|
self.change_frequency() |
|
556
|
|
|
self.change_power() |
|
557
|
|
|
self.sigMWOn.emit() |
|
558
|
|
|
|
|
559
|
|
|
|
|
560
|
|
|
############################################################################ |
|
561
|
|
|
## Change Methods ## |
|
562
|
|
|
############################################################################ |
|
563
|
|
|
|
|
564
|
|
|
def change_frequency(self): |
|
565
|
|
|
""" Change CW frequency of microwave source """ |
|
566
|
|
|
frequency = self._mw.frequency_DoubleSpinBox.value() |
|
567
|
|
|
self.sigMWFreqChanged.emit(frequency) |
|
568
|
|
|
|
|
569
|
|
|
def change_start_freq(self): |
|
570
|
|
|
""" Change start frequency of frequency sweep """ |
|
571
|
|
|
self._odmr_logic.mw_start = self._mw.start_freq_DoubleSpinBox.value() |
|
572
|
|
|
|
|
573
|
|
|
def change_step_freq(self): |
|
574
|
|
|
""" Change step size in which frequency is changed """ |
|
575
|
|
|
self._odmr_logic.mw_step = self._mw.step_freq_DoubleSpinBox.value() |
|
576
|
|
|
|
|
577
|
|
|
def change_stop_freq(self): |
|
578
|
|
|
""" Change end of frequency sweep """ |
|
579
|
|
|
self._odmr_logic.mw_stop = self._mw.stop_freq_DoubleSpinBox.value() |
|
580
|
|
|
|
|
581
|
|
|
def change_power(self): |
|
582
|
|
|
""" Change microwave power """ |
|
583
|
|
|
power = self._mw.power_DoubleSpinBox.value() |
|
584
|
|
|
self.sigMWPowerChanged.emit(power) |
|
585
|
|
|
|
|
586
|
|
|
def change_runtime(self): |
|
587
|
|
|
""" Change time after which microwave sweep is stopped """ |
|
588
|
|
|
self._odmr_logic.run_time = self._mw.runtime_DoubleSpinBox.value() |
|
589
|
|
|
|
|
590
|
|
|
def save_data(self): |
|
591
|
|
|
""" Save the sum plot, the scan marix plot and the scan data """ |
|
592
|
|
|
filetag = self._mw.save_tag_LineEdit.text() |
|
593
|
|
|
cb_range = self.get_matrix_cb_range() |
|
594
|
|
|
|
|
595
|
|
|
# Percentile range is None, unless the percentile scaling is selected in GUI. |
|
596
|
|
|
pcile_range = None |
|
597
|
|
|
if self._mw.odmr_cb_centiles_RadioButton.isChecked(): |
|
598
|
|
|
low_centile = self._mw.odmr_cb_low_percentile_DoubleSpinBox.value() |
|
599
|
|
|
high_centile = self._mw.odmr_cb_high_percentile_DoubleSpinBox.value() |
|
600
|
|
|
pcile_range = [low_centile, high_centile] |
|
601
|
|
|
|
|
602
|
|
|
self._odmr_logic.save_ODMR_Data(filetag, colorscale_range=cb_range, percentile_range=pcile_range) |
|
603
|
|
|
|
Ulm-IQO /
qudi
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