torchio.transforms.augmentation.intensity.random_biasfield_denoise

Complexity

Total Complexity

4

Size/Duplication

Total Lines	34
Duplicated Lines	0 %

Importance

Changes

0

3 Methods

Rating	Name	Duplication	Size	Complexity
A	RandomBiasFieldDenoise.__init__()	0	3	1
A	RandomBiasFieldDenoise.__repr__()	0	2	1
A	RandomBiasFieldDenoise.apply_transform()	0	13	2

import torch
from ...transform import Transform
from torchio.data.subject import Subject

class RandomBiasFieldDenoise(Transform):
    """
    Simple placeholder transform that simulates denoising after bias field
    correction by blending voxel intensities toward the mean value.
    
    Parameters:
        noise_reduction_factor (float): Strength of denoising (0-1).
    """

    def __init__(self, noise_reduction_factor: float = 0.1, **kwargs):
        super().__init__(**kwargs)
        self.noise_reduction_factor = noise_reduction_factor

    def apply_transform(self, subject: Subject) -> Subject:
        for _, image in subject.get_images_dict(intensity_only=True).items():
            tensor = image.data.float()

            # Basic denoising by shifting toward mean intensity
            mean_val = tensor.mean()
            tensor = (tensor * (1 - self.noise_reduction_factor)) + (
                mean_val * self.noise_reduction_factor
            )

            image.set_data(tensor)

        return subject

    def __repr__(self):
        return f"{self.__class__.__name__}(noise_reduction_factor={self.noise_reduction_factor})"