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import re |
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import hashlib |
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import unicodedata |
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import json |
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from distutils.util import strtobool |
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from subprocess import Popen, PIPE |
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def jobname_generator(jobname, job_id): |
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'''Crop the jobname to a maximum of 64 characters. |
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Parameters |
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---------- |
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jobname : str |
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Initial jobname. |
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job_id: str |
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ID of the job in the current batch. |
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Returns |
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------- |
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str |
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The cropped version of the string. |
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''' |
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# 64 - 1 since the total length including -1 should be less than 64 |
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job_id = str(job_id) |
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if len(jobname) + len(job_id) > 63: |
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croped_string = '{}_{}'.format(jobname[:63 - len(job_id)], job_id) |
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else: |
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croped_string = '{}_{}'.format(jobname, job_id) |
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return croped_string |
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def default_name(jobname, job_generator): |
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for pbs_id, pbs in enumerate(job_generator.pbs_list): |
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pbs.add_options(N = '{}{}{}'.format(jobname,'_', str(pbs_id))) |
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print(jobname) |
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print '{}{}{}'.format(jobname,'_', str(pbs_id)) |
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return '{}{}{}'.format(jobname,'_', str(pbs_id)) |
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def print_boxed(string): |
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splitted_string = string.split('\n') |
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max_len = max(map(len, splitted_string)) |
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box_line = u"\u2500" * (max_len + 2) |
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out = u"\u250c" + box_line + u"\u2510\n" |
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out += '\n'.join([u"\u2502 {} \u2502".format(line.ljust(max_len)) for line in splitted_string]) |
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out += u"\n\u2514" + box_line + u"\u2518" |
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print out |
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def yes_no_prompt(query, default=None): |
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available_prompts = {None: " [y/n] ", 'y': " [Y/n] ", 'n': " [y/N] "} |
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if default not in available_prompts: |
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raise ValueError("Invalid default: '{}'".format(default)) |
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while True: |
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try: |
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answer = raw_input("{0}{1}".format(query, available_prompts[default])) |
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return strtobool(answer) |
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except ValueError: |
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if answer == '' and default is not None: |
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return strtobool(default) |
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64
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def chunks(sequence, n): |
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""" Yield successive n-sized chunks from sequence. """ |
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for i in xrange(0, len(sequence), n): |
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yield sequence[i:i + n] |
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def generate_uid_from_string(value): |
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""" Create unique identifier from a string. """ |
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return hashlib.sha256(value).hexdigest() |
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def slugify(value): |
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""" |
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Converts to lowercase, removes non-word characters (alphanumerics and |
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underscores) and converts spaces to underscores. Also strips leading and |
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trailing whitespace. |
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Reference |
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--------- |
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https://github.com/django/django/blob/1.7c3/django/utils/text.py#L436 |
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""" |
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value = unicodedata.normalize('NFKD', unicode(value, "UTF-8")).encode('ascii', 'ignore').decode('ascii') |
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value = re.sub('[^\w\s-]', '', value).strip().lower() |
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return str(re.sub('[-\s]+', '_', value)) |
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def encode_escaped_characters(text, escaping_character="\\"): |
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""" Escape the escaped character using its hex representation """ |
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def hexify(match): |
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return "\\x{0}".format(match.group()[-1].encode("hex")) |
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return re.sub(r"\\.", hexify, text) |
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def decode_escaped_characters(text): |
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""" Convert hex representation to the character it represents """ |
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if len(text) == 0: |
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return '' |
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def unhexify(match): |
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return match.group()[2:].decode("hex") |
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return re.sub(r"\\x..", unhexify, text) |
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def save_dict_to_json_file(path, dictionary): |
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with open(path, "w") as json_file: |
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json_file.write(json.dumps(dictionary, indent=4, separators=(',', ': '))) |
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def load_dict_from_json_file(path): |
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with open(path, "r") as json_file: |
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return json.loads(json_file.read()) |
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def detect_cluster(): |
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# Get server status |
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try: |
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output = Popen(["qstat", "-B"], stdout=PIPE).communicate()[0] |
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except OSError: |
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# If qstat is not available we assume that the cluster is unknown. |
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return None |
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# Get server name from status |
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server_name = output.split('\n')[2].split(' ')[0] |
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# Cleanup the name and return it |
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cluster_name = None |
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if server_name.split('.')[-1] == 'm': |
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cluster_name = "mammouth" |
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elif server_name.split('.')[-1] == 'guil': |
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cluster_name = "guillimin" |
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elif server_name.split('.')[-1] == 'helios': |
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cluster_name = "helios" |
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elif server_name.split('.')[-1] == 'hades': |
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cluster_name = "hades" |
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return cluster_name |
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def get_launcher(cluster_name): |
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if cluster_name == "helios": |
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return "msub" |
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else: |
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return "qsub" |
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SMART-Lab /
smartdispatch
