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<?php |
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namespace PubPeerFoundation\PublicationDataExtractor\Resources\Extractors; |
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use PubPeerFoundation\PublicationDataExtractor\Helpers\DateHelper; |
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use PubPeerFoundation\PublicationDataExtractor\Helpers\Helpers; |
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use PubPeerFoundation\PublicationDataExtractor\Helpers\UpdateTypesStandardiser; |
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use PubPeerFoundation\PublicationDataExtractor\Exceptions\UnparseableApiException; |
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use PubPeerFoundation\PublicationDataExtractor\Exceptions\JournalTitleNotFoundException; |
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class Crossref implements Extractor, ProvidesPublicationData, ProvidesIdentifiersData, ProvidesJournalData, ProvidesAuthorsData, ProvidesUpdatesData |
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{ |
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protected $document; |
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protected $searchTree; |
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protected $output = []; |
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public function __construct($document) |
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{ |
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$this->document = $document; |
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} |
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public function extract(): array |
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{ |
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$this->getDataFromDocument(); |
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$this->extractAuthorsData(); |
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$this->extractIdentifiersData(); |
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try { |
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$this->extractJournalData(); |
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} catch (JournalTitleNotFoundException $e) { |
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$this->searchTree['container-title'] = $this->searchTree['publisher']; |
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} |
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$this->extractPublicationData(); |
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$this->extractTagsData(); |
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$this->extractTypesData(); |
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$this->extractUpdatesData(); |
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return $this->output; |
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} |
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protected function getDataFromDocument() |
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{ |
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if ('ok' !== $this->document['status']) { |
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throw new UnparseableApiException(); |
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} |
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$this->searchTree = $this->document['message']; |
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} |
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/** |
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* Extract and format data needed for the Publication Model. |
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*/ |
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public function extractPublicationData() |
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{ |
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$date = $this->extractDateFrom(['published-print', 'published-online', 'issued']); |
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$this->output['publication'] = [ |
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'title' => Helpers::flatten($this->searchTree['title'] ?? null) , |
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'abstract' => Helpers::flatten($this->searchTree['abstract'] ?? null), |
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'url' => $this->searchTree['URL'] ?? null, |
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'published_at' => $date, |
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]; |
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} |
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/** |
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* Extract and format data needed for the Identifiers Relationship |
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* on the Publication Model. |
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*/ |
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public function extractIdentifiersData() |
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{ |
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if (! empty($this->searchTree['DOI'])) { |
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$this->output['identifiers'][] = [ |
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'value' => $this->searchTree['DOI'], |
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'type' => 'doi', |
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]; |
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} |
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foreach ($this->getIssnList() as $issn) { |
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$this->output['identifiers'][] = [ |
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'value' => $issn, |
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'type' => 'issn', |
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]; |
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} |
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} |
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/** |
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* Extract and format data needed for the Journal Relationship |
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* on the Publication Model. |
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*/ |
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public function extractJournalData() |
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{ |
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if (empty($this->searchTree['container-title']) && empty($this->searchTree['ISSN'])) { |
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throw new JournalTitleNotFoundException(); |
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} |
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$this->output['journal'] = [ |
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'title' => Helpers::flatten($this->searchTree['container-title'] ?? null), |
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'issn' => $this->getIssnList() ?? null, |
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'publisher' => Helpers::flatten($this->searchTree['publisher'] ?? null), |
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]; |
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} |
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/** |
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* Extract and format data needed for the Authors Relationship |
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* on the Publication Model. |
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*/ |
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public function extractAuthorsData() |
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{ |
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if (array_key_exists('author', $this->searchTree)) { |
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foreach ($this->searchTree['author'] as $author) { |
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if (isset($author['family'])) { |
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$this->output['authors'][] = [ |
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'first_name' => $author['given'] ?? null, |
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'last_name' => $author['family'] ?? null, |
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'orcid' => $author['ORCID'] ?? null, |
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'affiliation' => $author['affiliation'] ?? null, |
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]; |
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} |
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} |
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} |
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} |
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/** |
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* Extract and format data needed for the Types Relationship |
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* on the Publication Model. |
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*/ |
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public function extractTypesData() |
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{ |
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$this->output['types'][] = [ |
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'name' => $this->searchTree['type'] ?? null, |
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]; |
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} |
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/** |
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* Extract and format data needed for the tags Relationship |
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* on the Publication Model. |
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*/ |
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public function extractTagsData() |
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{ |
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if (array_key_exists('subject', $this->searchTree)) { |
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foreach ($this->searchTree['subject'] as $tag) { |
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$this->output['tags'][] = [ |
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'name' => $tag, |
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]; |
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} |
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} |
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} |
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protected function extractDateFrom($array) |
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{ |
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$datePartsContainer = array_values(array_filter($array, function ($string) { |
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return isset($this->searchTree[$string]); |
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}))[0]; |
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return (new DateHelper()) |
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->dateFromDateParts($this->searchTree[$datePartsContainer]['date-parts'][0]); |
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} |
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public function extractUpdatesData() |
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{ |
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if (array_key_exists('update-to', $this->searchTree)) { |
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foreach ($this->searchTree['update-to'] as $update) { |
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$this->output['updates'][] = [ |
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'timestamp' => $update['updated']['timestamp'], |
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'identifier' => [ |
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'doi' => $update['DOI'], |
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], |
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'type' => UpdateTypesStandardiser::getType($update['type']), |
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]; |
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} |
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} |
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} |
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protected function getIssnList() |
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{ |
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if (! empty($this->searchTree['ISSN'])) { |
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return (is_array($this->searchTree['ISSN'])) |
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? $this->searchTree['ISSN'] |
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: [$this->searchTree['ISSN']]; |
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} |
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return []; |
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} |
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} |
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PubPeerFoundation /
PublicationDataExtractor
