EutilsEsearch::getDataFrom() - Code Metrics - Inspection of "Big refactor + EutilsEsearch added" - PubPeerFoundation/PublicationDataExtractor - Measure and Improve Code Quality continuously with Scrutinizer

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by Xavier

created 2018-06-20 09:16 UTC

EutilsEsearch::getDataFrom() A

↳ Parent: EutilsEsearch

Complexity

Conditions	2
Paths	4

Size

Total Lines	9
Code Lines	6

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
dl	0
loc	9
rs	9.6666
c	0
b	0
f	0
cc	2
eloc	6
nc	4
nop	1

<?php

namespace PubPeerFoundation\PublicationDataExtractor\Resources;

use PubPeerFoundation\PublicationDataExtractor\Identifiers\Identifier;

class EutilsEsearch implements Resource
{
    /**
     * @var string
     */
    protected $url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi';

    /**
     * @var array
     */
    protected $queryStringParameters = [
        'query' => [
            'db' => 'pubmed',
            'version' => '2.0',
            'retmode' => 'json',
            'term' => '',
            'field' => 'AID',
        ],
    ];

    /**
     * EutilsEsearch constructor.
     *
     * @param Identifier $identifier
     */
    public function __construct(Identifier $identifier)
    {
        $this->queryStringParameters['query']['term'] = $identifier->getQueryString();
    }

    /**
     * @return string
     */
    public function getApiUrl(): string
    {
        return $this->url;
    }

    /**
     * @return array
     */
    public function getRequestOptions(): array
    {
        return $this->queryStringParameters;
    }

    /**
     * @param string $document
     *
     * @return array
     */
    public function getDataFrom(string $document): array
    {
        try {
            $baseTree = json_decode($document, true);
            $extractor = new Extractors\EutilsEsearch($baseTree);

            return $extractor->extract();
        } catch (\Exception $e) {
            return [];
        }
    }
}


1			<?php
2
3			namespace PubPeerFoundation\PublicationDataExtractor\Resources;
4
5			use PubPeerFoundation\PublicationDataExtractor\Identifiers\Identifier;
6
7			class EutilsEsearch implements Resource
8			{
9			/**
10			* @var string
11			*/
12			protected $url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi';
13
14			/**
15			* @var array
16			*/
17			protected $queryStringParameters = [
18			'query' => [
19			'db' => 'pubmed',
20			'version' => '2.0',
21			'retmode' => 'json',
22			'term' => '',
23			'field' => 'AID',
24			],
25			];
26
27			/**
28			* EutilsEsearch constructor.
29			*
30			* @param Identifier $identifier
31			*/
32			public function __construct(Identifier $identifier)
33			{
34			$this->queryStringParameters['query']['term'] = $identifier->getQueryString();
35			}
36
37			/**
38			* @return string
39			*/
40			public function getApiUrl(): string
41			{
42			return $this->url;
43			}
44
45			/**
46			* @return array
47			*/
48			public function getRequestOptions(): array
49			{
50			return $this->queryStringParameters;
51			}
52
53			/**
54			* @param string $document
55			*
56			* @return array
57			*/
58			public function getDataFrom(string $document): array
59			{
60			try {
61			$baseTree = json_decode($document, true);
62			$extractor = new Extractors\EutilsEsearch($baseTree);
63
64			return $extractor->extract();
65			} catch (\Exception $e) {
66			return [];
67			}
68			}
69			}
70

PubPeerFoundation / PublicationDataExtractor

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EutilsEsearch::getDataFrom() A

Complexity

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