|
1
|
|
|
# -*- coding: utf-8 -*- |
|
2
|
|
|
''' |
|
3
|
|
|
This module contains utility functions for dealing with skos providers. |
|
4
|
|
|
''' |
|
5
|
|
|
from __future__ import unicode_literals |
|
6
|
|
|
import logging |
|
7
|
|
|
import warnings |
|
8
|
|
|
import sys |
|
9
|
|
|
|
|
10
|
|
|
log = logging.getLogger(__name__) |
|
11
|
|
|
|
|
12
|
|
|
from rdflib import Graph, Literal, Namespace |
|
13
|
|
|
from rdflib.term import URIRef, BNode |
|
14
|
|
|
from rdflib.namespace import RDF, SKOS, DCTERMS, VOID |
|
15
|
|
|
SKOS_THES = Namespace('http://purl.org/iso25964/skos-thes#') |
|
16
|
|
|
from skosprovider.skos import ( |
|
17
|
|
|
Concept, |
|
18
|
|
|
Collection |
|
19
|
|
|
) |
|
20
|
|
|
|
|
21
|
|
|
from xml.dom.minidom import Node, Element |
|
22
|
|
|
import html5lib |
|
23
|
|
|
|
|
24
|
|
|
PY3 = sys.version_info[0] == 3 |
|
25
|
|
|
|
|
26
|
|
|
if PY3: # pragma: no cover |
|
27
|
|
|
binary_type = bytes |
|
28
|
|
|
else: # pragma: no cover |
|
29
|
|
|
binary_type = str |
|
30
|
|
|
|
|
31
|
|
|
|
|
32
|
|
|
def rdf_dumper(provider): |
|
33
|
|
|
''' |
|
34
|
|
|
Dump a provider to a format that can be passed to a |
|
35
|
|
|
:class:`skosprovider.providers.RDFProvider`. |
|
36
|
|
|
|
|
37
|
|
|
:param skosprovider.providers.VocabularyProvider provider: The provider |
|
38
|
|
|
that wil be turned into an :class:`rdflib.graph.Graph`. |
|
39
|
|
|
|
|
40
|
|
|
:rtype: :class:`rdflib.graph.Graph` |
|
41
|
|
|
''' |
|
42
|
|
|
return _rdf_dumper(provider, None) |
|
43
|
|
|
|
|
44
|
|
|
|
|
45
|
|
|
def rdf_c_dumper(provider, c): |
|
46
|
|
|
''' |
|
47
|
|
|
Dump one concept or collection from a provider to a format that can be passed to a |
|
48
|
|
|
:class:`skosprovider.providers.RDFProvider`. |
|
49
|
|
|
|
|
50
|
|
|
:param skosprovider.providers.VocabularyProvider provider: The provider |
|
51
|
|
|
that wil be turned into an :class:`rdflib.graph.Graph`. |
|
52
|
|
|
|
|
53
|
|
|
:param String c: identifier |
|
54
|
|
|
|
|
55
|
|
|
:rtype: :class:`rdflib.graph.Graph` |
|
56
|
|
|
''' |
|
57
|
|
|
return _rdf_dumper(provider, [c]) |
|
58
|
|
|
|
|
59
|
|
|
|
|
60
|
|
|
def _rdf_dumper(provider, id_list=None): |
|
61
|
|
|
''' |
|
62
|
|
|
Dump a provider to a format that can be passed to a |
|
63
|
|
|
:class:`skosprovider.providers.RDFProvider`. |
|
64
|
|
|
|
|
65
|
|
|
:param skosprovider.providers.VocabularyProvider provider: The provider |
|
66
|
|
|
that wil be turned into an :class:`rdflib.graph.Graph`. |
|
67
|
|
|
|
|
68
|
|
|
:param List id_list: List of id's of the data to dump. |
|
69
|
|
|
|
|
70
|
|
|
:rtype: :class:`rdflib.graph.Graph` |
|
71
|
|
|
''' |
|
72
|
|
|
graph = Graph() |
|
73
|
|
|
graph.namespace_manager.bind("skos", SKOS) |
|
74
|
|
|
graph.namespace_manager.bind("dcterms", DCTERMS) |
|
75
|
|
|
graph.namespace_manager.bind("skos-thes", SKOS_THES) |
|
76
|
|
|
graph.namespace_manager.bind("void", VOID) |
|
77
|
|
|
conceptscheme = URIRef(provider.concept_scheme.uri) |
|
78
|
|
|
_add_in_dataset(graph, conceptscheme, provider) |
|
79
|
|
|
graph.add((conceptscheme, RDF.type, SKOS.ConceptScheme)) |
|
80
|
|
|
graph.add((conceptscheme, DCTERMS.identifier, Literal(provider.metadata['id']))) |
|
81
|
|
|
_add_labels(graph, provider.concept_scheme, conceptscheme) |
|
82
|
|
|
_add_notes(graph, provider.concept_scheme, conceptscheme) |
|
83
|
|
|
_add_sources(graph, provider.concept_scheme, conceptscheme) |
|
84
|
|
|
_add_languages(graph, provider.concept_scheme, conceptscheme) |
|
85
|
|
|
# Add triples using store's add method. |
|
86
|
|
|
if not id_list: |
|
87
|
|
|
id_list = [x['id'] for x in provider.get_all()] |
|
88
|
|
|
for c in provider.get_top_concepts(): |
|
89
|
|
|
graph.add((conceptscheme, SKOS.hasTopConcept, URIRef(c['uri']))) |
|
90
|
|
|
for id in id_list: |
|
91
|
|
|
c = provider.get_by_id(id) |
|
92
|
|
|
subject = URIRef(c.uri) |
|
93
|
|
|
_add_in_dataset(graph, subject, provider) |
|
94
|
|
|
graph.add((subject, DCTERMS.identifier, Literal(c.id))) |
|
95
|
|
|
graph.add((subject, SKOS.inScheme, conceptscheme)) |
|
96
|
|
|
_add_labels(graph, c, subject) |
|
97
|
|
|
_add_notes(graph, c, subject) |
|
98
|
|
|
_add_sources(graph, c, subject) |
|
99
|
|
|
if isinstance(c, Concept): |
|
100
|
|
|
graph.add((subject, RDF.type, SKOS.Concept)) |
|
101
|
|
|
for b in c.broader: |
|
102
|
|
|
broader = provider.get_by_id(b) |
|
103
|
|
|
if broader: |
|
104
|
|
|
graph.add((subject, SKOS.broader, URIRef(broader.uri))) |
|
105
|
|
|
else: |
|
106
|
|
|
warnings.warn(_warning(b), UserWarning) |
|
107
|
|
|
for n in c.narrower: |
|
108
|
|
|
narrower = provider.get_by_id(n) |
|
109
|
|
|
if narrower: |
|
110
|
|
|
graph.add((subject, SKOS.narrower, URIRef(narrower.uri))) |
|
111
|
|
|
else: |
|
112
|
|
|
warnings.warn(_warning(n), UserWarning) |
|
113
|
|
|
for r in c.related: |
|
114
|
|
|
related = provider.get_by_id(r) |
|
115
|
|
|
if related: |
|
116
|
|
|
graph.add((subject, SKOS.related, URIRef(related.uri))) |
|
117
|
|
|
else: |
|
118
|
|
|
warnings.warn(_warning(r), UserWarning) |
|
119
|
|
|
for s in c.subordinate_arrays: |
|
120
|
|
|
subordinate_array = provider.get_by_id(s) |
|
121
|
|
|
if subordinate_array: |
|
122
|
|
|
graph.add((subject, SKOS_THES.subordinateArray, URIRef(subordinate_array.uri))) |
|
123
|
|
|
else: |
|
124
|
|
|
warnings.warn(_warning(s), UserWarning) |
|
125
|
|
|
for k in c.matches.keys(): |
|
126
|
|
|
for uri in c.matches[k]: |
|
127
|
|
|
graph.add((subject, URIRef(SKOS + k +'Match'), URIRef(uri))) |
|
128
|
|
|
elif isinstance(c, Collection): |
|
129
|
|
|
graph.add((subject, RDF.type, SKOS.Collection)) |
|
130
|
|
|
for m in c.members: |
|
131
|
|
|
member = provider.get_by_id(m) |
|
132
|
|
|
if member: |
|
133
|
|
|
graph.add((subject, SKOS.member, URIRef(member.uri))) |
|
134
|
|
|
else: |
|
135
|
|
|
warnings.warn(_warning(m), UserWarning) |
|
136
|
|
|
for s in c.superordinates: |
|
137
|
|
|
superordinate = provider.get_by_id(s) |
|
138
|
|
|
if superordinate: |
|
139
|
|
|
graph.add((subject, SKOS_THES.superOrdinate, URIRef(superordinate.uri))) |
|
140
|
|
|
else: |
|
141
|
|
|
warnings.warn(_warning(s), UserWarning) |
|
142
|
|
|
|
|
143
|
|
|
return graph |
|
144
|
|
|
|
|
145
|
|
|
|
|
146
|
|
|
def rdf_conceptscheme_dumper(provider): |
|
147
|
|
|
''' |
|
148
|
|
|
Dump all information of the conceptscheme of a provider to a format that can be passed to a |
|
149
|
|
|
:class:`skosprovider.providers.RDFProvider`. |
|
150
|
|
|
|
|
151
|
|
|
:param skosprovider.providers.VocabularyProvider provider: The provider |
|
152
|
|
|
that wil be turned into an :class:`rdflib.graph.Graph`. |
|
153
|
|
|
|
|
154
|
|
|
:rtype: :class:`rdflib.graph.Graph` |
|
155
|
|
|
''' |
|
156
|
|
|
graph = Graph() |
|
157
|
|
|
graph.namespace_manager.bind("skos", SKOS) |
|
158
|
|
|
graph.namespace_manager.bind("dcterms", DCTERMS) |
|
159
|
|
|
graph.namespace_manager.bind("skos-thes", SKOS_THES) |
|
160
|
|
|
graph.namespace_manager.bind("void", VOID) |
|
161
|
|
|
conceptscheme = URIRef(provider.concept_scheme.uri) |
|
162
|
|
|
_add_in_dataset(graph, conceptscheme, provider) |
|
163
|
|
|
graph.add((conceptscheme, RDF.type, SKOS.ConceptScheme)) |
|
164
|
|
|
graph.add((conceptscheme, DCTERMS.identifier, Literal(provider.metadata['id']))) |
|
165
|
|
|
_add_labels(graph, provider.concept_scheme, conceptscheme) |
|
166
|
|
|
_add_notes(graph, provider.concept_scheme, conceptscheme) |
|
167
|
|
|
_add_sources(graph, provider.concept_scheme, conceptscheme) |
|
168
|
|
|
_add_languages(graph, provider.concept_scheme, conceptscheme) |
|
169
|
|
|
for c in provider.get_top_concepts(): |
|
170
|
|
|
graph.add((conceptscheme, SKOS.hasTopConcept, URIRef(c['uri']))) |
|
171
|
|
|
|
|
172
|
|
|
return graph |
|
173
|
|
|
|
|
174
|
|
|
|
|
175
|
|
|
def _warning(id): |
|
176
|
|
|
return 'id %s could not be resolved' % id |
|
177
|
|
|
|
|
178
|
|
|
|
|
179
|
|
|
def _add_in_dataset(graph, subject, provider): |
|
180
|
|
|
''' |
|
181
|
|
|
Checks if the provider says something about a dataset and if so adds |
|
182
|
|
|
void.inDataset statements. |
|
183
|
|
|
|
|
184
|
|
|
:param rdflib.graph.Graph graph: The graph to add statements to. |
|
185
|
|
|
:param rdflib.term.URIRef subject: The subject to add an inDataset statement to. |
|
186
|
|
|
:param skosprovider.providers.VocabularyProvider provider: |
|
187
|
|
|
''' |
|
188
|
|
|
|
|
189
|
|
|
duri = provider.get_metadata().get('dataset', {}).get('uri', None) |
|
190
|
|
|
if duri: |
|
191
|
|
|
graph.add((subject, VOID.inDataset, URIRef(duri))) |
|
192
|
|
|
|
|
193
|
|
|
|
|
194
|
|
|
def _add_labels(graph, c, subject): |
|
195
|
|
|
for l in c.labels: |
|
196
|
|
|
predicate = URIRef(SKOS + l.type) |
|
197
|
|
|
lang = extract_language(l.language) |
|
198
|
|
|
graph.add((subject, predicate, Literal(l.label, lang=lang))) |
|
199
|
|
|
|
|
200
|
|
|
|
|
201
|
|
|
def _add_notes(graph, c, subject): |
|
202
|
|
|
for n in c.notes: |
|
203
|
|
|
predicate = URIRef(SKOS + n.type) |
|
204
|
|
|
lang = extract_language(n.language) |
|
205
|
|
|
if n.markup is None: |
|
206
|
|
|
graph.add((subject, predicate, Literal(n.note, lang=lang))) |
|
207
|
|
|
else: |
|
208
|
|
|
html = _add_lang_to_html(n.note, lang) |
|
209
|
|
|
graph.add((subject, predicate, Literal(html, datatype=RDF.HTML))) |
|
210
|
|
|
|
|
211
|
|
|
def _add_lang_to_html(htmltext, lang): |
|
212
|
|
|
''' |
|
213
|
|
|
Take a piece of HTML and add an xml:lang attribute to it. |
|
214
|
|
|
''' |
|
215
|
|
|
if lang == 'und': |
|
216
|
|
|
return htmltext |
|
217
|
|
|
parser = html5lib.HTMLParser( |
|
218
|
|
|
tree=html5lib.treebuilders.getTreeBuilder("dom") |
|
219
|
|
|
) |
|
220
|
|
|
html = parser.parseFragment(htmltext) |
|
221
|
|
|
html.normalize() |
|
222
|
|
|
if len(html.childNodes) == 0: |
|
223
|
|
|
return '<div xml:lang="%s"></div>' % lang |
|
224
|
|
|
elif len(html.childNodes) == 1: |
|
225
|
|
|
node = html.firstChild |
|
226
|
|
|
if node.nodeType == Node.TEXT_NODE: |
|
227
|
|
|
div = Element('div') |
|
228
|
|
|
div.ownerDocument = html |
|
229
|
|
|
div.setAttribute('xml:lang', lang) |
|
230
|
|
|
div.childNodes = [node] |
|
231
|
|
|
html.childNodes = [div] |
|
232
|
|
|
else: |
|
233
|
|
|
node.setAttribute('xml:lang', lang) |
|
234
|
|
|
else: |
|
235
|
|
|
#add a single encompassing div |
|
236
|
|
|
div = Element('div') |
|
237
|
|
|
div.ownerDocument = html |
|
238
|
|
|
div.setAttribute('xml:lang', lang) |
|
239
|
|
|
div.childNodes = html.childNodes |
|
240
|
|
|
html.childNodes = [div] |
|
241
|
|
|
return html.toxml() |
|
242
|
|
|
|
|
243
|
|
|
def _add_sources(graph, c, subject): |
|
244
|
|
|
''' |
|
245
|
|
|
Add sources to the RDF graph. |
|
246
|
|
|
|
|
247
|
|
|
:param rdflib.graph.Graph graph: An RDF Graph. |
|
248
|
|
|
:param c: A :class:`skosprovider.skos.ConceptScheme`, |
|
249
|
|
|
:class:`skosprovider.skos.Concept` or :class:`skosprovider.skos.Collection` |
|
250
|
|
|
:param subject: The RDF subject to add the sources to. |
|
251
|
|
|
''' |
|
252
|
|
|
for s in c.sources: |
|
253
|
|
|
source = BNode() |
|
254
|
|
|
graph.add((source, RDF.type, DCTERMS.BibliographicResource)) |
|
255
|
|
|
if s.markup is None: |
|
256
|
|
|
graph.add((source, DCTERMS.bibliographicCitation, Literal(s.citation))) |
|
257
|
|
|
else: |
|
258
|
|
|
graph.add((source, DCTERMS.bibliographicCitation, Literal(s.citation, datatype=RDF.HTML))) |
|
259
|
|
|
graph.add((subject, DCTERMS.source, source)) |
|
260
|
|
|
|
|
261
|
|
|
def _add_languages(graph, c, subject): |
|
262
|
|
|
''' |
|
263
|
|
|
Add languages to the RDF graph. |
|
264
|
|
|
|
|
265
|
|
|
:param rdflib.graph.Graph graph: An RDF Graph. |
|
266
|
|
|
:param c: A :class:`skosprovider.skos.ConceptScheme`. |
|
267
|
|
|
:param subject: The RDF subject to add the sources to. |
|
268
|
|
|
''' |
|
269
|
|
|
for l in c.languages: |
|
270
|
|
|
lang = extract_language(l) |
|
271
|
|
|
graph.add((subject, DCTERMS.language, Literal(l))) |
|
272
|
|
|
|
|
273
|
|
|
def extract_language(lang): |
|
274
|
|
|
''' |
|
275
|
|
|
Turn a language in our domain model into a IANA tag. |
|
276
|
|
|
''' |
|
277
|
|
|
if lang is None: |
|
278
|
|
|
lang = 'und' # return undefined code when no language |
|
279
|
|
|
else: |
|
280
|
|
|
lang = text_(lang, encoding="UTF-8") |
|
281
|
|
|
return lang |
|
282
|
|
|
|
|
283
|
|
|
|
|
284
|
|
|
def text_(s, encoding='latin-1', errors='strict'): |
|
285
|
|
|
""" If ``s`` is an instance of ``binary_type``, return |
|
286
|
|
|
``s.decode(encoding, errors)``, otherwise return ``s``""" |
|
287
|
|
|
if isinstance(s, binary_type): |
|
288
|
|
|
return s.decode(encoding, errors) |
|
289
|
|
|
return s |
|
290
|
|
|
|
|
291
|
|
|
def _df_writexml(self, writer, indent="", addindent="", newl=""): |
|
292
|
|
|
''' |
|
293
|
|
|
Monkeypatch method for unexisting `writexml` in |
|
294
|
|
|
:class:`xml.dom.minidom.DocumentFragment`. |
|
295
|
|
|
''' |
|
296
|
|
|
# indent = current indentation |
|
297
|
|
|
# addindent = indentation to add to higher levels |
|
298
|
|
|
# newl = newline string |
|
299
|
|
|
if self.childNodes: |
|
300
|
|
|
if (len(self.childNodes) == 1 and |
|
301
|
|
|
self.childNodes[0].nodeType == Node.TEXT_NODE): |
|
302
|
|
|
self.childNodes[0].writexml(writer, '', '', '') |
|
303
|
|
|
else: |
|
304
|
|
|
for node in self.childNodes: |
|
305
|
|
|
node.writexml(writer, indent+addindent, addindent, newl) |
|
306
|
|
|
|
|
307
|
|
|
from xml.dom.minidom import DocumentFragment |
|
308
|
|
|
DocumentFragment.writexml = _df_writexml |
|
309
|
|
|
|