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""" |
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OCR-D CLI: workspace management |
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.. click:: ocrd.cli.workspace:workspace_cli |
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:prog: ocrd workspace |
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:nested: full |
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""" |
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import os |
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from os import getcwd |
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from os.path import relpath, exists, join, isabs |
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from pathlib import Path |
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from json import loads |
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import sys |
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from glob import glob # XXX pathlib.Path.glob does not support absolute globs |
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import re |
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import time |
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import click |
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from ocrd import Resolver, Workspace, WorkspaceValidator, WorkspaceBackupManager |
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from ocrd.mets_server import OcrdMetsServer |
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from ocrd_utils import getLogger, initLogging, pushd_popd, EXT_TO_MIME, safe_filename, parse_json_string_or_file |
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from ocrd.decorators import mets_find_options |
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from . import command_with_replaced_help |
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class WorkspaceCtx(): |
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def __init__(self, directory, mets_url, mets_basename, mets_server_url, automatic_backup): |
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self.log = getLogger('ocrd.cli.workspace') |
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if mets_basename: |
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self.log.warning(DeprecationWarning('--mets-basename is deprecated. Use --mets/--directory instead.')) |
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self.resolver = Resolver() |
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self.directory, self.mets_url, self.mets_basename, self.mets_server_url \ |
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= self.resolver.resolve_mets_arguments(directory, mets_url, mets_basename, mets_server_url) |
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self.automatic_backup = automatic_backup |
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pass_workspace = click.make_pass_decorator(WorkspaceCtx) |
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# ---------------------------------------------------------------------- |
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# ocrd workspace |
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# ---------------------------------------------------------------------- |
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@click.group("workspace") |
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@click.option('-d', '--directory', envvar='WORKSPACE_DIR', type=click.Path(file_okay=False), metavar='WORKSPACE_DIR', help='Changes the workspace folder location [default: METS_URL directory or .]"') |
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@click.option('-M', '--mets-basename', default=None, help='METS file basename. Deprecated, use --mets/--directory') |
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@click.option('-m', '--mets', default=None, help='The path/URL of the METS file [default: WORKSPACE_DIR/mets.xml]', metavar="METS_URL") |
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@click.option('-U', '--mets-server-url', 'mets_server_url', help="TCP host of METS server") |
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@click.option('--backup', default=False, help="Backup mets.xml whenever it is saved.", is_flag=True) |
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@click.pass_context |
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def workspace_cli(ctx, directory, mets, mets_basename, mets_server_url, backup): |
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""" |
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Managing workspaces |
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A workspace comprises a METS file and a directory as point of reference. |
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Operates on the file system directly or via a METS server |
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(already running via some prior `server start` subcommand). |
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""" |
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initLogging() |
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ctx.obj = WorkspaceCtx( |
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directory, |
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mets_url=mets, |
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mets_basename=mets_basename, |
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mets_server_url=mets_server_url, |
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automatic_backup=backup |
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) |
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# ---------------------------------------------------------------------- |
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# ocrd workspace validate |
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# ---------------------------------------------------------------------- |
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@workspace_cli.command('validate', cls=command_with_replaced_help( |
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(r' \[METS_URL\]', ''))) # XXX deprecated argument |
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@pass_workspace |
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@click.option('-a', '--download', is_flag=True, help="Download all files") |
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@click.option('-s', '--skip', help="Tests to skip", default=[], multiple=True, type=click.Choice( |
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['imagefilename', 'dimension', 'pixel_density', 'page', 'url', 'page_xsd', 'mets_fileid_page_pcgtsid', |
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'mets_unique_identifier', 'mets_file_group_names', 'mets_files', 'mets_xsd'])) |
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@click.option('--page-textequiv-consistency', '--page-strictness', help="How strict to check PAGE multi-level textequiv consistency", type=click.Choice(['strict', 'lax', 'fix', 'off']), default='strict') |
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@click.option('--page-coordinate-consistency', help="How fierce to check PAGE multi-level coordinate consistency", type=click.Choice(['poly', 'baseline', 'both', 'off']), default='poly') |
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@click.argument('mets_url', default=None, required=False) |
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def workspace_validate(ctx, mets_url, download, skip, page_textequiv_consistency, page_coordinate_consistency): |
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""" |
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Validate a workspace |
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METS_URL can be a URL, an absolute path or a path relative to $PWD. |
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If not given, use --mets accordingly. |
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Check that the METS and its referenced file contents |
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abide by the OCR-D specifications. |
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""" |
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LOG = getLogger('ocrd.cli.workspace.validate') |
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if mets_url: |
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LOG.warning(DeprecationWarning("Use 'ocrd workspace --mets METS init' instead of argument 'METS_URL' ('%s')" % mets_url)) |
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else: |
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mets_url = ctx.mets_url |
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report = WorkspaceValidator.validate( |
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ctx.resolver, |
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mets_url, |
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src_dir=ctx.directory, |
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skip=skip, |
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download=download, |
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page_strictness=page_textequiv_consistency, |
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page_coordinate_consistency=page_coordinate_consistency |
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) |
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print(report.to_xml()) |
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if not report.is_valid: |
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sys.exit(128) |
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# ---------------------------------------------------------------------- |
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# ocrd workspace clone |
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# ---------------------------------------------------------------------- |
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@workspace_cli.command('clone', cls=command_with_replaced_help( |
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(r' \[WORKSPACE_DIR\]', ''))) # XXX deprecated argument |
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@click.option('-f', '--clobber-mets', help="Overwrite existing METS file", default=False, is_flag=True) |
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@click.option('-a', '--download', is_flag=True, help="Download all files and change location in METS file after cloning") |
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@click.argument('mets_url') |
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# XXX deprecated |
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@click.argument('workspace_dir', default=None, required=False) |
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@pass_workspace |
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def workspace_clone(ctx, clobber_mets, download, mets_url, workspace_dir): |
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""" |
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Create a workspace from METS_URL and return the directory |
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METS_URL can be a URL, an absolute path or a path relative to $PWD. |
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If METS_URL is not provided, use --mets accordingly. |
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METS_URL can also be an OAI-PMH GetRecord URL wrapping a METS file. |
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""" |
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LOG = getLogger('ocrd.cli.workspace.clone') |
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if workspace_dir: |
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LOG.warning(DeprecationWarning("Use 'ocrd workspace --directory DIR clone' instead of argument 'WORKSPACE_DIR' ('%s')" % workspace_dir)) |
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ctx.directory = workspace_dir |
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workspace = ctx.resolver.workspace_from_url( |
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mets_url, |
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dst_dir=ctx.directory, |
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mets_basename=ctx.mets_basename, |
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clobber_mets=clobber_mets, |
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download=download, |
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) |
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workspace.save_mets() |
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print(workspace.directory) |
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# ---------------------------------------------------------------------- |
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# ocrd workspace init |
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# ---------------------------------------------------------------------- |
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@workspace_cli.command('init', cls=command_with_replaced_help( |
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(r' \[DIRECTORY\]', ''))) # XXX deprecated argument |
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@click.option('-f', '--clobber-mets', help="Clobber mets.xml if it exists", is_flag=True, default=False) |
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# XXX deprecated |
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@click.argument('directory', default=None, required=False) |
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@pass_workspace |
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def workspace_init(ctx, clobber_mets, directory): |
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""" |
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Create a workspace with an empty METS file in --directory. |
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""" |
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LOG = getLogger('ocrd.cli.workspace.init') |
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if directory: |
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LOG.warning(DeprecationWarning("Use 'ocrd workspace --directory DIR init' instead of argument 'DIRECTORY' ('%s')" % directory)) |
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ctx.directory = directory |
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workspace = ctx.resolver.workspace_from_nothing( |
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directory=ctx.directory, |
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mets_basename=ctx.mets_basename, |
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clobber_mets=clobber_mets |
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) |
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workspace.save_mets() |
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print(workspace.directory) |
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# ---------------------------------------------------------------------- |
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# ocrd workspace add |
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# ---------------------------------------------------------------------- |
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@workspace_cli.command('add') |
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@click.option('-G', '--file-grp', help="fileGrp USE", required=True, metavar='FILE_GRP') |
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@click.option('-i', '--file-id', help="ID for the file", required=True, metavar='FILE_ID') |
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@click.option('-m', '--mimetype', help="Media type of the file. Guessed from extension if not provided", required=False, metavar='TYPE') |
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@click.option('-g', '--page-id', help="ID of the physical page", metavar='PAGE_ID') |
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@click.option('-C', '--check-file-exists', help="Whether to ensure FNAME exists", is_flag=True, default=False) |
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@click.option('--ignore', help="Do not check whether file exists.", default=False, is_flag=True) |
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@click.option('--force', help="If file with ID already exists, replace it. No effect if --ignore is set.", default=False, is_flag=True) |
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@click.argument('fname', required=True) |
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@pass_workspace |
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def workspace_add_file(ctx, file_grp, file_id, mimetype, page_id, ignore, check_file_exists, force, fname): |
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""" |
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Add a file or http(s) URL FNAME to METS in a workspace. |
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If FNAME is not an http(s) URL and is not a workspace-local existing file, try to copy to workspace. |
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""" |
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workspace = Workspace( |
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ctx.resolver, |
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directory=ctx.directory, |
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mets_basename=ctx.mets_basename, |
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automatic_backup=ctx.automatic_backup, |
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mets_server_url=ctx.mets_server_url, |
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) |
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log = getLogger('ocrd.cli.workspace.add') |
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if not mimetype: |
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try: |
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mimetype = EXT_TO_MIME[Path(fname).suffix] |
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log.info("Guessed mimetype to be %s" % mimetype) |
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except KeyError: |
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log.error("Cannot guess mimetype from extension '%s' for '%s'. Set --mimetype explicitly" % (Path(fname).suffix, fname)) |
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log.debug("Adding '%s'", fname) |
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local_filename = None |
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if not (fname.startswith('http://') or fname.startswith('https://')): |
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if not fname.startswith(ctx.directory): |
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if not isabs(fname) and exists(join(ctx.directory, fname)): |
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fname = join(ctx.directory, fname) |
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else: |
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log.debug("File '%s' is not in workspace, copying", fname) |
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try: |
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fname = ctx.resolver.download_to_directory(ctx.directory, fname, subdir=file_grp) |
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except FileNotFoundError: |
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if check_file_exists: |
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log.error("File '%s' does not exist, halt execution!" % fname) |
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sys.exit(1) |
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if check_file_exists and not exists(fname): |
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log.error("File '%s' does not exist, halt execution!" % fname) |
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sys.exit(1) |
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if fname.startswith(ctx.directory): |
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fname = relpath(fname, ctx.directory) |
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local_filename = fname |
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if not page_id: |
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log.warning("You did not provide '--page-id/-g', so the file you added is not linked to a specific page.") |
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kwargs = { |
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'file_id': file_id, |
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'mimetype': mimetype, |
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'page_id': page_id, |
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'force': force, |
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'ignore': ignore, |
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'local_filename': local_filename, |
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'url': fname |
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} |
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241
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workspace.add_file(file_grp, **kwargs) |
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workspace.save_mets() |
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# ---------------------------------------------------------------------- |
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# ocrd workspace bulk-add |
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# ---------------------------------------------------------------------- |
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247
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248
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# pylint: disable=broad-except |
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249
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@workspace_cli.command('bulk-add') |
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@click.option('-r', '--regex', help="Regular expression matching the FILE_GLOB filesystem paths to define named captures usable in the other parameters", required=True) |
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@click.option('-m', '--mimetype', help="Media type of the file. If not provided, guess from filename", required=False) |
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252
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@click.option('-g', '--page-id', help="physical page ID of the file", required=False) |
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253
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@click.option('-i', '--file-id', help="ID of the file. If not provided, derive from fileGrp and filename", required=False) |
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254
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@click.option('-u', '--url', help="Remote URL of the file", required=False) |
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255
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@click.option('-l', '--local-filename', help="Local filesystem path in the workspace directory (copied from source file if different)", required=False) |
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256
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@click.option('-G', '--file-grp', help="File group USE of the file", required=True) |
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257
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@click.option('-n', '--dry-run', help="Don't actually do anything to the METS or filesystem, just preview", default=False, is_flag=True) |
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258
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@click.option('-S', '--source-path', 'src_path_option', help="File path to copy from (if different from FILE_GLOB values)", required=False) |
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259
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@click.option('-I', '--ignore', help="Disable checking for existing file entries (faster)", default=False, is_flag=True) |
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260
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@click.option('-f', '--force', help="Replace existing file entries with the same ID (no effect when --ignore is set, too)", default=False, is_flag=True) |
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261
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@click.option('-s', '--skip', help="Skip files not matching --regex (instead of failing)", default=False, is_flag=True) |
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262
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@click.argument('file_glob', nargs=-1, required=True) |
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263
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@pass_workspace |
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264
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def workspace_cli_bulk_add(ctx, regex, mimetype, page_id, file_id, url, local_filename, file_grp, dry_run, file_glob, src_path_option, ignore, force, skip): |
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265
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""" |
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266
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Add files in bulk to an OCR-D workspace. |
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267
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268
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FILE_GLOB can either be a shell glob expression to match file names, |
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or a list of expressions or '-', in which case expressions are read from STDIN. |
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270
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271
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After globbing, --regex is matched against each expression resulting from FILE_GLOB, and can |
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272
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define named groups reusable in the --page-id, --file-id, --mimetype, --url, --source-path and |
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--file-grp options, e.g. by referencing the group name 'grp' from the regex as '{{ grp }}'. |
|
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|
275
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If the FILE_GLOB expressions do not denote the file names themselves |
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276
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(but arbitrary strings for --regex matching), then use --source-path to set |
|
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the actual file paths to use. (This could involve fixed strings or group references.) |
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\b |
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Examples: |
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281
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ocrd workspace bulk-add \\ |
|
282
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--regex '(?P<fileGrp>[^/]+)/page_(?P<pageid>.*)\.[^.]+' \\ |
|
283
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|
|
--page-id 'PHYS_{{ pageid }}' \\ |
|
284
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|
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--file-grp "{{ fileGrp }}" \\ |
|
285
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path/to/files/*/*.* |
|
286
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|
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\b |
|
287
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|
|
echo "path/to/src/file.xml SEG/page_p0001.xml" \\ |
|
288
|
|
|
| ocrd workspace bulk-add \\ |
|
289
|
|
|
--regex '(?P<src>.*?) (?P<fileGrp>.+?)/page_(?P<pageid>.*)\.(?P<ext>[^\.]*)' \\ |
|
290
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|
|
--file-id 'FILE_{{ fileGrp }}_{{ pageid }}' \\ |
|
291
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|
|
--page-id 'PHYS_{{ pageid }}' \\ |
|
292
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|
|
--file-grp "{{ fileGrp }}" \\ |
|
293
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|
|
--local-filename '{{ fileGrp }}/FILE_{{ pageid }}.{{ ext }}' \\ |
|
294
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|
|
- |
|
295
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|
296
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|
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\b |
|
297
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|
|
{ echo PHYS_0001 BIN FILE_0001_BIN.IMG-wolf BIN/FILE_0001_BIN.IMG-wolf.png; \\ |
|
298
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|
|
echo PHYS_0001 BIN FILE_0001_BIN BIN/FILE_0001_BIN.xml; \\ |
|
299
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|
|
echo PHYS_0002 BIN FILE_0002_BIN.IMG-wolf BIN/FILE_0002_BIN.IMG-wolf.png; \\ |
|
300
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|
|
echo PHYS_0002 BIN FILE_0002_BIN BIN/FILE_0002_BIN.xml; \\ |
|
301
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|
|
} | ocrd workspace bulk-add -r '(?P<pageid>.*) (?P<filegrp>.*) (?P<fileid>.*) (?P<local_filename>.*)' \\ |
|
302
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|
-G '{{ filegrp }}' -g '{{ pageid }}' -i '{{ fileid }}' -S '{{ local_filename }}' - |
|
303
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|
|
""" |
|
304
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|
|
log = getLogger('ocrd.cli.workspace.bulk-add') # pylint: disable=redefined-outer-name |
|
305
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|
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workspace = Workspace( |
|
306
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|
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ctx.resolver, |
|
307
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|
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directory=ctx.directory, |
|
308
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|
|
mets_basename=ctx.mets_basename, |
|
309
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|
automatic_backup=ctx.automatic_backup, |
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310
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mets_server_url=ctx.mets_server_url, |
|
311
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|
|
) |
|
312
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|
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|
313
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try: |
|
314
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|
|
pat = re.compile(regex) |
|
315
|
|
|
except Exception as e: |
|
316
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|
|
log.error("Invalid regex: %s" % e) |
|
317
|
|
|
sys.exit(1) |
|
318
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|
|
|
|
319
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|
|
file_paths = [] |
|
320
|
|
|
from_stdin = file_glob == ('-',) |
|
321
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|
|
if from_stdin: |
|
322
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|
|
file_paths += [Path(x.strip('\n')) for x in sys.stdin.readlines()] |
|
323
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|
|
else: |
|
324
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|
|
for fglob in file_glob: |
|
325
|
|
|
expanded = glob(fglob) |
|
326
|
|
|
if not expanded: |
|
327
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|
|
file_paths += [Path(fglob)] |
|
328
|
|
|
else: |
|
329
|
|
|
file_paths += [Path(x) for x in expanded] |
|
330
|
|
|
|
|
331
|
|
|
for i, file_path in enumerate(file_paths): |
|
332
|
|
|
log.info("[%4d/%d] %s" % (i + 1, len(file_paths), file_path)) |
|
333
|
|
|
|
|
334
|
|
|
# match regex |
|
335
|
|
|
m = pat.match(str(file_path)) |
|
336
|
|
|
if not m: |
|
337
|
|
|
if skip: |
|
338
|
|
|
continue |
|
339
|
|
|
log.error("File '%s' not matched by regex: '%s'" % (file_path, regex)) |
|
340
|
|
|
sys.exit(1) |
|
341
|
|
|
group_dict = m.groupdict() |
|
342
|
|
|
|
|
343
|
|
|
# set up file info |
|
344
|
|
|
file_dict = {'local_filename': local_filename, 'url': url, 'mimetype': mimetype, 'file_id': file_id, 'page_id': page_id, 'file_grp': file_grp} |
|
345
|
|
|
|
|
346
|
|
|
# Flag to track whether 'local_filename' should be 'src' |
|
347
|
|
|
local_filename_is_src = False |
|
348
|
|
|
|
|
349
|
|
|
# expand templates |
|
350
|
|
|
for param_name in file_dict: |
|
351
|
|
|
if not file_dict[param_name]: |
|
352
|
|
|
if param_name == 'local_filename': |
|
353
|
|
|
local_filename_is_src = True |
|
354
|
|
|
continue |
|
355
|
|
|
elif param_name in ['mimetype', 'file_id']: |
|
356
|
|
|
# auto-filled below once the other |
|
357
|
|
|
# replacements have happened |
|
358
|
|
|
continue |
|
359
|
|
|
elif param_name == 'url': |
|
360
|
|
|
# Remote URL is not required |
|
361
|
|
|
continue |
|
362
|
|
|
raise ValueError(f"OcrdFile attribute '{param_name}' unset ({file_dict})") |
|
363
|
|
|
for group_name in group_dict: |
|
364
|
|
|
file_dict[param_name] = file_dict[param_name].replace('{{ %s }}' % group_name, group_dict[group_name]) |
|
365
|
|
|
|
|
366
|
|
|
# Where to copy from |
|
367
|
|
|
if src_path_option: |
|
368
|
|
|
src_path = src_path_option |
|
369
|
|
|
for group_name in group_dict: |
|
370
|
|
|
src_path = src_path.replace('{{ %s }}' % group_name, group_dict[group_name]) |
|
371
|
|
|
srcpath = Path(src_path) |
|
372
|
|
|
else: |
|
373
|
|
|
srcpath = file_path |
|
374
|
|
|
|
|
375
|
|
|
# derive --file-id from filename if not --file-id not explicitly set |
|
376
|
|
|
if not file_id: |
|
377
|
|
|
id_field = srcpath.stem if file_path != srcpath else file_path.stem |
|
378
|
|
|
file_dict['file_id'] = safe_filename('%s_%s' % (file_dict['file_grp'], id_field)) |
|
379
|
|
|
if not mimetype: |
|
380
|
|
|
try: |
|
381
|
|
|
file_dict['mimetype'] = EXT_TO_MIME[srcpath.suffix] |
|
382
|
|
|
except KeyError: |
|
383
|
|
|
log.error("Cannot guess MIME type from extension '%s' for '%s'. Set --mimetype explicitly" % (srcpath.suffix, srcpath)) |
|
384
|
|
|
|
|
385
|
|
|
# copy files if src != url |
|
386
|
|
|
if local_filename_is_src: |
|
387
|
|
|
file_dict['local_filename'] = srcpath |
|
388
|
|
|
else: |
|
389
|
|
|
destpath = Path(workspace.directory, file_dict['local_filename']) |
|
390
|
|
|
if srcpath != destpath and not destpath.exists(): |
|
391
|
|
|
log.info("cp '%s' '%s'", srcpath, destpath) |
|
392
|
|
|
if not dry_run: |
|
393
|
|
|
if not destpath.parent.is_dir(): |
|
394
|
|
|
destpath.parent.mkdir() |
|
395
|
|
|
destpath.write_bytes(srcpath.read_bytes()) |
|
396
|
|
|
|
|
397
|
|
|
# Add to workspace (or not) |
|
398
|
|
|
fileGrp = file_dict.pop('file_grp') |
|
399
|
|
|
if dry_run: |
|
400
|
|
|
log.info('workspace.add_file(%s)' % file_dict) |
|
401
|
|
|
else: |
|
402
|
|
|
workspace.add_file(fileGrp, ignore=ignore, force=force, **file_dict) |
|
403
|
|
|
|
|
404
|
|
|
# save changes to disk |
|
405
|
|
|
workspace.save_mets() |
|
406
|
|
|
|
|
407
|
|
|
|
|
408
|
|
|
# ---------------------------------------------------------------------- |
|
409
|
|
|
# ocrd workspace find |
|
410
|
|
|
# ---------------------------------------------------------------------- |
|
411
|
|
|
|
|
412
|
|
|
@workspace_cli.command('find') |
|
413
|
|
|
@mets_find_options |
|
414
|
|
|
@click.option('-k', '--output-field', help="Output field. Repeat for multiple fields, will be joined with tab", |
|
415
|
|
|
default=['local_filename'], |
|
416
|
|
|
multiple=True, |
|
417
|
|
|
type=click.Choice([ |
|
418
|
|
|
'url', |
|
419
|
|
|
'mimetype', |
|
420
|
|
|
'page_id', |
|
421
|
|
|
'pageId', |
|
422
|
|
|
'file_id', |
|
423
|
|
|
'ID', |
|
424
|
|
|
'file_grp', |
|
425
|
|
|
'fileGrp', |
|
426
|
|
|
'basename', |
|
427
|
|
|
'basename_without_extension', |
|
428
|
|
|
'local_filename', |
|
429
|
|
|
])) |
|
430
|
|
|
@click.option('--download', is_flag=True, help="Download found files to workspace and change location in METS file ") |
|
431
|
|
|
@click.option('--undo-download', is_flag=True, help="Remove all downloaded files from the METS") |
|
432
|
|
|
@click.option('--wait', type=int, default=0, help="Wait this many seconds between download requests") |
|
433
|
|
|
@pass_workspace |
|
434
|
|
|
def workspace_find(ctx, file_grp, mimetype, page_id, file_id, output_field, download, undo_download, wait): |
|
435
|
|
|
""" |
|
436
|
|
|
Find files. |
|
437
|
|
|
|
|
438
|
|
|
(If any ``FILTER`` starts with ``//``, then its remainder |
|
439
|
|
|
will be interpreted as a regular expression.) |
|
440
|
|
|
""" |
|
441
|
|
|
snake_to_camel = {"file_id": "ID", "page_id": "pageId", "file_grp": "fileGrp"} |
|
442
|
|
|
output_field = [snake_to_camel.get(x, x) for x in output_field] |
|
443
|
|
|
modified_mets = False |
|
444
|
|
|
ret = list() |
|
445
|
|
|
workspace = Workspace( |
|
446
|
|
|
ctx.resolver, |
|
447
|
|
|
directory=ctx.directory, |
|
448
|
|
|
mets_basename=ctx.mets_basename, |
|
449
|
|
|
mets_server_url=ctx.mets_server_url, |
|
450
|
|
|
) |
|
451
|
|
|
for f in workspace.find_files( |
|
452
|
|
|
file_id=file_id, |
|
453
|
|
|
file_grp=file_grp, |
|
454
|
|
|
mimetype=mimetype, |
|
455
|
|
|
page_id=page_id, |
|
456
|
|
|
): |
|
457
|
|
|
ret_entry = [f.ID if field == 'pageId' else str(getattr(f, field)) or '' for field in output_field] |
|
458
|
|
|
if download and not f.local_filename: |
|
459
|
|
|
workspace.download_file(f) |
|
460
|
|
|
modified_mets = True |
|
461
|
|
|
if wait: |
|
462
|
|
|
time.sleep(wait) |
|
463
|
|
|
if undo_download and f.local_filename: |
|
464
|
|
|
ret_entry = [f'Removed local_filename {f.local_filename}'] |
|
465
|
|
|
f.local_filename = None |
|
466
|
|
|
modified_mets = True |
|
467
|
|
|
ret.append(ret_entry) |
|
468
|
|
|
if modified_mets: |
|
469
|
|
|
workspace.save_mets() |
|
470
|
|
|
if 'pageId' in output_field: |
|
471
|
|
|
idx = output_field.index('pageId') |
|
472
|
|
|
fileIds = list(map(lambda fields: fields[idx], ret)) |
|
|
|
|
|
|
473
|
|
|
pages = workspace.mets.get_physical_pages(for_fileIds=fileIds) |
|
474
|
|
|
for fields, page in zip(ret, pages): |
|
475
|
|
|
fields[idx] = page or '' |
|
476
|
|
|
for fields in ret: |
|
477
|
|
|
print('\t'.join(fields)) |
|
478
|
|
|
|
|
479
|
|
|
# ---------------------------------------------------------------------- |
|
480
|
|
|
# ocrd workspace remove |
|
481
|
|
|
# ---------------------------------------------------------------------- |
|
482
|
|
|
|
|
483
|
|
|
@workspace_cli.command('remove') |
|
484
|
|
|
@click.option('-k', '--keep-file', help="Do not delete file from file system", default=False, is_flag=True) |
|
485
|
|
|
@click.option('-f', '--force', help="Continue even if mets:file or file on file system does not exist", default=False, is_flag=True) |
|
486
|
|
|
@click.argument('ID', nargs=-1) |
|
487
|
|
|
@pass_workspace |
|
488
|
|
|
def workspace_remove_file(ctx, id, force, keep_file): # pylint: disable=redefined-builtin |
|
489
|
|
|
""" |
|
490
|
|
|
Delete files (given by their ID attribute ``ID``). |
|
491
|
|
|
|
|
492
|
|
|
(If any ``ID`` starts with ``//``, then its remainder |
|
493
|
|
|
will be interpreted as a regular expression.) |
|
494
|
|
|
""" |
|
495
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup) |
|
496
|
|
|
for i in id: |
|
497
|
|
|
workspace.remove_file(i, force=force, keep_file=keep_file) |
|
498
|
|
|
workspace.save_mets() |
|
499
|
|
|
|
|
500
|
|
|
|
|
501
|
|
|
# ---------------------------------------------------------------------- |
|
502
|
|
|
# ocrd workspace rename-group |
|
503
|
|
|
# ---------------------------------------------------------------------- |
|
504
|
|
|
|
|
505
|
|
|
@workspace_cli.command('rename-group') |
|
506
|
|
|
@click.argument('OLD', nargs=1) |
|
507
|
|
|
@click.argument('NEW', nargs=1) |
|
508
|
|
|
@pass_workspace |
|
509
|
|
|
def rename_group(ctx, old, new): |
|
510
|
|
|
""" |
|
511
|
|
|
Rename fileGrp (USE attribute ``NEW`` to ``OLD``). |
|
512
|
|
|
""" |
|
513
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename) |
|
514
|
|
|
workspace.rename_file_group(old, new) |
|
515
|
|
|
workspace.save_mets() |
|
516
|
|
|
|
|
517
|
|
|
# ---------------------------------------------------------------------- |
|
518
|
|
|
# ocrd workspace remove-group |
|
519
|
|
|
# ---------------------------------------------------------------------- |
|
520
|
|
|
|
|
521
|
|
|
@workspace_cli.command('remove-group') |
|
522
|
|
|
@click.option('-r', '--recursive', help="Delete any files in the group before the group itself", default=False, is_flag=True) |
|
523
|
|
|
@click.option('-f', '--force', help="Continue removing even if group or containing files not found in METS", default=False, is_flag=True) |
|
524
|
|
|
@click.option('-k', '--keep-files', help="Do not delete files from file system", default=False, is_flag=True) |
|
525
|
|
|
@click.argument('GROUP', nargs=-1) |
|
526
|
|
|
@pass_workspace |
|
527
|
|
|
def remove_group(ctx, group, recursive, force, keep_files): |
|
528
|
|
|
""" |
|
529
|
|
|
Delete fileGrps (given by their USE attribute ``GROUP``). |
|
530
|
|
|
|
|
531
|
|
|
(If any ``GROUP`` starts with ``//``, then its remainder |
|
532
|
|
|
will be interpreted as a regular expression.) |
|
533
|
|
|
""" |
|
534
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename) |
|
535
|
|
|
for g in group: |
|
536
|
|
|
workspace.remove_file_group(g, recursive=recursive, force=force, keep_files=keep_files) |
|
537
|
|
|
workspace.save_mets() |
|
538
|
|
|
|
|
539
|
|
|
# ---------------------------------------------------------------------- |
|
540
|
|
|
# ocrd workspace prune-files |
|
541
|
|
|
# ---------------------------------------------------------------------- |
|
542
|
|
|
|
|
543
|
|
|
@workspace_cli.command('prune-files') |
|
544
|
|
|
@click.option('-G', '--file-grp', help="fileGrp USE", metavar='FILTER') |
|
545
|
|
|
@click.option('-m', '--mimetype', help="Media type to look for", metavar='FILTER') |
|
546
|
|
|
@click.option('-g', '--page-id', help="Page ID", metavar='FILTER') |
|
547
|
|
|
@click.option('-i', '--file-id', help="ID", metavar='FILTER') |
|
548
|
|
|
@pass_workspace |
|
549
|
|
|
def prune_files(ctx, file_grp, mimetype, page_id, file_id): |
|
550
|
|
|
""" |
|
551
|
|
|
Removes mets:files that point to non-existing local files |
|
552
|
|
|
|
|
553
|
|
|
(If any ``FILTER`` starts with ``//``, then its remainder |
|
554
|
|
|
will be interpreted as a regular expression.) |
|
555
|
|
|
""" |
|
556
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup) |
|
557
|
|
|
with pushd_popd(workspace.directory): |
|
558
|
|
|
for f in workspace.find_files( |
|
559
|
|
|
file_id=file_id, |
|
560
|
|
|
file_grp=file_grp, |
|
561
|
|
|
mimetype=mimetype, |
|
562
|
|
|
page_id=page_id, |
|
563
|
|
|
): |
|
564
|
|
|
try: |
|
565
|
|
|
if not f.local_filename or not exists(f.local_filename): |
|
566
|
|
|
workspace.mets.remove_file(f.ID) |
|
567
|
|
|
except Exception as e: |
|
568
|
|
|
ctx.log.exception("Error removing %f: %s", f, e) |
|
569
|
|
|
raise(e) |
|
570
|
|
|
workspace.save_mets() |
|
571
|
|
|
|
|
572
|
|
|
# ---------------------------------------------------------------------- |
|
573
|
|
|
# ocrd workspace list-group |
|
574
|
|
|
# ---------------------------------------------------------------------- |
|
575
|
|
|
|
|
576
|
|
|
@workspace_cli.command('list-group') |
|
577
|
|
|
@pass_workspace |
|
578
|
|
|
def list_groups(ctx): |
|
579
|
|
|
""" |
|
580
|
|
|
List fileGrp USE attributes |
|
581
|
|
|
""" |
|
582
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename) |
|
583
|
|
|
print("\n".join(workspace.mets.file_groups)) |
|
584
|
|
|
|
|
585
|
|
|
# ---------------------------------------------------------------------- |
|
586
|
|
|
# ocrd workspace list-pages |
|
587
|
|
|
# ---------------------------------------------------------------------- |
|
588
|
|
|
|
|
589
|
|
|
@workspace_cli.command('list-page') |
|
590
|
|
|
@pass_workspace |
|
591
|
|
|
def list_pages(ctx): |
|
592
|
|
|
""" |
|
593
|
|
|
List physical page IDs |
|
594
|
|
|
""" |
|
595
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename) |
|
596
|
|
|
print("\n".join(workspace.mets.physical_pages)) |
|
597
|
|
|
|
|
598
|
|
|
# ---------------------------------------------------------------------- |
|
599
|
|
|
# ocrd workspace get-id |
|
600
|
|
|
# ---------------------------------------------------------------------- |
|
601
|
|
|
|
|
602
|
|
|
@workspace_cli.command('get-id') |
|
603
|
|
|
@pass_workspace |
|
604
|
|
|
def get_id(ctx): |
|
605
|
|
|
""" |
|
606
|
|
|
Get METS id if any |
|
607
|
|
|
""" |
|
608
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename) |
|
609
|
|
|
ID = workspace.mets.unique_identifier |
|
610
|
|
|
if ID: |
|
611
|
|
|
print(ID) |
|
612
|
|
|
|
|
613
|
|
|
# ---------------------------------------------------------------------- |
|
614
|
|
|
# ocrd workspace set-id |
|
615
|
|
|
# ---------------------------------------------------------------------- |
|
616
|
|
|
|
|
617
|
|
|
@workspace_cli.command('set-id') |
|
618
|
|
|
@click.argument('ID') |
|
619
|
|
|
@pass_workspace |
|
620
|
|
|
def set_id(ctx, id): # pylint: disable=redefined-builtin |
|
621
|
|
|
""" |
|
622
|
|
|
Set METS ID. |
|
623
|
|
|
|
|
624
|
|
|
If one of the supported identifier mechanisms is used, will set this identifier. |
|
625
|
|
|
|
|
626
|
|
|
Otherwise will create a new <mods:identifier type="purl">{{ ID }}</mods:identifier>. |
|
627
|
|
|
""" |
|
628
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup) |
|
629
|
|
|
workspace.mets.unique_identifier = id |
|
630
|
|
|
workspace.save_mets() |
|
631
|
|
|
|
|
632
|
|
|
@workspace_cli.command('update-page') |
|
633
|
|
|
@click.option('--order', help="@ORDER attribute for this mets:div", metavar='ORDER') |
|
634
|
|
|
@click.option('--orderlabel', help="@ORDERLABEL attribute for this mets:div", metavar='ORDERLABEL') |
|
635
|
|
|
@click.option('--contentids', help="@CONTENTIDS attribute for this mets:div", metavar='ORDERLABEL') |
|
636
|
|
|
@click.argument('PAGE_ID') |
|
637
|
|
|
@pass_workspace |
|
638
|
|
|
def update_page(ctx, order, orderlabel, contentids, page_id): |
|
639
|
|
|
""" |
|
640
|
|
|
Update the @ORDER, @ORDERLABEL o @CONTENTIDS attributes of the mets:div with @ID=PAGE_ID |
|
641
|
|
|
""" |
|
642
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup) |
|
643
|
|
|
workspace.mets.update_physical_page_attributes(page_id, order=order, orderlabel=orderlabel, contentids=contentids) |
|
644
|
|
|
workspace.save_mets() |
|
645
|
|
|
|
|
646
|
|
|
# ---------------------------------------------------------------------- |
|
647
|
|
|
# ocrd workspace merge |
|
648
|
|
|
# ---------------------------------------------------------------------- |
|
649
|
|
|
|
|
650
|
|
|
def _handle_json_option(ctx, param, value): |
|
651
|
|
|
return parse_json_string_or_file(value) if value else None |
|
652
|
|
|
|
|
653
|
|
|
@workspace_cli.command('merge') |
|
654
|
|
|
@click.argument('METS_PATH') |
|
655
|
|
|
@click.option('--overwrite/--no-overwrite', is_flag=True, default=False, help="Overwrite on-disk file in case of file name conflicts with data from METS_PATH") |
|
656
|
|
|
@click.option('--force/--no-force', is_flag=True, default=False, help="Overwrite mets:file from --mets with mets:file from METS_PATH if IDs clash") |
|
657
|
|
|
@click.option('--copy-files/--no-copy-files', is_flag=True, help="Copy files as well", default=True, show_default=True) |
|
658
|
|
|
@click.option('--fileGrp-mapping', help="JSON object mapping src to dest fileGrp", callback=_handle_json_option) |
|
659
|
|
|
@click.option('--fileId-mapping', help="JSON object mapping src to dest file ID", callback=_handle_json_option) |
|
660
|
|
|
@click.option('--pageId-mapping', help="JSON object mapping src to dest page ID", callback=_handle_json_option) |
|
661
|
|
|
@mets_find_options |
|
662
|
|
|
@pass_workspace |
|
663
|
|
|
def merge(ctx, overwrite, force, copy_files, filegrp_mapping, fileid_mapping, pageid_mapping, file_grp, file_id, page_id, mimetype, mets_path): # pylint: disable=redefined-builtin |
|
664
|
|
|
""" |
|
665
|
|
|
Merges this workspace with the workspace that contains ``METS_PATH`` |
|
666
|
|
|
|
|
667
|
|
|
Pass a JSON string or file to ``--fileGrp-mapping``, ``--fileId-mapping`` or ``--pageId-mapping`` |
|
668
|
|
|
in order to rename all fileGrp, file ID or page ID values, respectively. |
|
669
|
|
|
|
|
670
|
|
|
The ``--file-id``, ``--page-id``, ``--mimetype`` and ``--file-grp`` options have |
|
671
|
|
|
the same semantics as in ``ocrd workspace find``, see ``ocrd workspace find --help`` |
|
672
|
|
|
for an explanation. |
|
673
|
|
|
""" |
|
674
|
|
|
mets_path = Path(mets_path) |
|
675
|
|
|
if filegrp_mapping: |
|
676
|
|
|
filegrp_mapping = loads(filegrp_mapping) |
|
677
|
|
|
workspace = Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup) |
|
678
|
|
|
other_workspace = Workspace(ctx.resolver, directory=str(mets_path.parent), mets_basename=str(mets_path.name)) |
|
679
|
|
|
workspace.merge( |
|
680
|
|
|
other_workspace, |
|
681
|
|
|
force=force, |
|
682
|
|
|
overwrite=overwrite, |
|
683
|
|
|
copy_files=copy_files, |
|
684
|
|
|
fileGrp_mapping=filegrp_mapping, |
|
685
|
|
|
fileId_mapping=fileid_mapping, |
|
686
|
|
|
pageId_mapping=pageid_mapping, |
|
687
|
|
|
file_grp=file_grp, |
|
688
|
|
|
file_id=file_id, |
|
689
|
|
|
page_id=page_id, |
|
690
|
|
|
mimetype=mimetype |
|
691
|
|
|
) |
|
692
|
|
|
workspace.save_mets() |
|
693
|
|
|
|
|
694
|
|
|
# ---------------------------------------------------------------------- |
|
695
|
|
|
# ocrd workspace backup |
|
696
|
|
|
# ---------------------------------------------------------------------- |
|
697
|
|
|
|
|
698
|
|
|
@workspace_cli.group('backup') |
|
699
|
|
|
@click.pass_context |
|
700
|
|
|
def workspace_backup_cli(ctx): # pylint: disable=unused-argument |
|
701
|
|
|
""" |
|
702
|
|
|
Backing and restoring workspaces - dev edition |
|
703
|
|
|
""" |
|
704
|
|
|
|
|
705
|
|
|
@workspace_backup_cli.command('add') |
|
706
|
|
|
@pass_workspace |
|
707
|
|
|
def workspace_backup_add(ctx): |
|
708
|
|
|
""" |
|
709
|
|
|
Create a new backup |
|
710
|
|
|
""" |
|
711
|
|
|
backup_manager = WorkspaceBackupManager(Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup)) |
|
712
|
|
|
backup_manager.add() |
|
713
|
|
|
|
|
714
|
|
|
@workspace_backup_cli.command('list') |
|
715
|
|
|
@pass_workspace |
|
716
|
|
|
def workspace_backup_list(ctx): |
|
717
|
|
|
""" |
|
718
|
|
|
List backups |
|
719
|
|
|
""" |
|
720
|
|
|
backup_manager = WorkspaceBackupManager(Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup)) |
|
721
|
|
|
for b in backup_manager.list(): |
|
722
|
|
|
print(b) |
|
723
|
|
|
|
|
724
|
|
|
@workspace_backup_cli.command('restore') |
|
725
|
|
|
@click.option('-f', '--choose-first', help="Restore first matching version if more than one", is_flag=True) |
|
726
|
|
|
@click.argument('bak') #, type=click.Path(dir_okay=False, readable=True, resolve_path=True)) |
|
727
|
|
|
@pass_workspace |
|
728
|
|
|
def workspace_backup_restore(ctx, choose_first, bak): |
|
729
|
|
|
""" |
|
730
|
|
|
Restore backup BAK |
|
731
|
|
|
""" |
|
732
|
|
|
backup_manager = WorkspaceBackupManager(Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup)) |
|
733
|
|
|
backup_manager.restore(bak, choose_first) |
|
734
|
|
|
|
|
735
|
|
|
@workspace_backup_cli.command('undo') |
|
736
|
|
|
@pass_workspace |
|
737
|
|
|
def workspace_backup_undo(ctx): |
|
738
|
|
|
""" |
|
739
|
|
|
Restore the last backup |
|
740
|
|
|
""" |
|
741
|
|
|
backup_manager = WorkspaceBackupManager(Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename, automatic_backup=ctx.automatic_backup)) |
|
742
|
|
|
backup_manager.undo() |
|
743
|
|
|
|
|
744
|
|
|
|
|
745
|
|
|
# ---------------------------------------------------------------------- |
|
746
|
|
|
# ocrd workspace server |
|
747
|
|
|
# ---------------------------------------------------------------------- |
|
748
|
|
|
|
|
749
|
|
|
@workspace_cli.group('server') |
|
750
|
|
|
@pass_workspace |
|
751
|
|
|
def workspace_serve_cli(ctx): # pylint: disable=unused-argument |
|
752
|
|
|
"""Control a METS server for this workspace""" |
|
753
|
|
|
assert ctx.mets_server_url, "For METS server commands, you must provide '-U/--mets-server-url'" |
|
754
|
|
|
|
|
755
|
|
|
@workspace_serve_cli.command('stop') |
|
756
|
|
|
@pass_workspace |
|
757
|
|
|
def workspace_serve_stop(ctx): # pylint: disable=unused-argument |
|
758
|
|
|
"""Stop the METS server""" |
|
759
|
|
|
workspace = Workspace( |
|
760
|
|
|
ctx.resolver, |
|
761
|
|
|
directory=ctx.directory, |
|
762
|
|
|
mets_basename=ctx.mets_basename, |
|
763
|
|
|
mets_server_url=ctx.mets_server_url, |
|
764
|
|
|
) |
|
765
|
|
|
workspace.mets.stop() |
|
766
|
|
|
|
|
767
|
|
|
@workspace_serve_cli.command('start') |
|
768
|
|
|
@pass_workspace |
|
769
|
|
|
def workspace_serve_start(ctx): # pylint: disable=unused-argument |
|
770
|
|
|
""" |
|
771
|
|
|
Start a METS server |
|
772
|
|
|
|
|
773
|
|
|
(For TCP backend, pass a network interface to bind to as the '-U/--mets-server-url' parameter.) |
|
774
|
|
|
""" |
|
775
|
|
|
OcrdMetsServer( |
|
776
|
|
|
workspace=Workspace(ctx.resolver, directory=ctx.directory, mets_basename=ctx.mets_basename), |
|
777
|
|
|
url=ctx.mets_server_url, |
|
778
|
|
|
).startup() |
|
779
|
|
|
|
OCR-D /
core
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