ocrd_models.ocrd_mets.OcrdMets.merge() - Code Metrics - Inspection of "Release 2.36.0" - OCR-D/core - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Pull Request — master (#889)

by Konstantin

created 2022-07-15 16:22 UTC

ocrd_models.ocrd_mets.OcrdMets.merge() B

↳ Parent: ocrd_models.ocrd_mets

Complexity

Conditions

Size

Total Lines	29
Code Lines	16

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	16
dl	0
loc	29
rs	8.6666
c	0
b	0
f	0
cc	6
nop	7

"""
API to METS
"""
from datetime import datetime
import re
from lxml import etree as ET

from ocrd_utils import (
    is_local_filename,
    getLogger,
    generate_range,
    VERSION,
    REGEX_PREFIX,
    REGEX_FILE_ID
)

from .constants import (
    NAMESPACES as NS,
    TAG_METS_AGENT,
    TAG_METS_DIV,
    TAG_METS_FILE,
    TAG_METS_FILEGRP,
    TAG_METS_FILESEC,
    TAG_METS_FPTR,
    TAG_METS_METSHDR,
    TAG_METS_STRUCTMAP,
    IDENTIFIER_PRIORITY,
    TAG_MODS_IDENTIFIER,
    METS_XML_EMPTY,
)

from .ocrd_xml_base import OcrdXmlDocument, ET
from .ocrd_file import OcrdFile
from .ocrd_agent import OcrdAgent

REGEX_PREFIX_LEN = len(REGEX_PREFIX)

class OcrdMets(OcrdXmlDocument):
    """
    API to a single METS file
    """

    @staticmethod
    def empty_mets(now=None):
        """
        Create an empty METS file from bundled template.
        """
        if not now:
            now = datetime.now().isoformat()
        tpl = METS_XML_EMPTY.decode('utf-8')
        tpl = tpl.replace('{{ VERSION }}', VERSION)
        tpl = tpl.replace('{{ NOW }}', '%s' % now)
        return OcrdMets(content=tpl.encode('utf-8'))

    def __init__(self, **kwargs):
        """

        """
        super(OcrdMets, self).__init__(**kwargs)

    def __str__(self):
        """
        String representation
        """
        return 'OcrdMets[fileGrps=%s,files=%s]' % (self.file_groups, list(self.find_files()))

    @property
    def unique_identifier(self):
        """
        Get the unique identifier by looking through ``mods:identifier``

        See `specs <https://ocr-d.de/en/spec/mets#unique-id-for-the-document-processed>`_ for details.
        """
        for t in IDENTIFIER_PRIORITY:
            found = self._tree.getroot().find('.//mods:identifier[@type="%s"]' % t, NS)
            if found is not None:
                return found.text

    @unique_identifier.setter
    def unique_identifier(self, purl):
        """
        Set the unique identifier by looking through ``mods:identifier``

        See `specs <https://ocr-d.de/en/spec/mets#unique-id-for-the-document-processed>`_ for details.
        """
        id_el = None
        for t in IDENTIFIER_PRIORITY:
            id_el = self._tree.getroot().find('.//mods:identifier[@type="%s"]' % t, NS)
            if id_el is not None:
                break
        if id_el is None:
            mods = self._tree.getroot().find('.//mods:mods', NS)
            id_el = ET.SubElement(mods, TAG_MODS_IDENTIFIER)
            id_el.set('type', 'purl')
        id_el.text = purl

    @property
    def agents(self):
        """
        List all :py:class:`ocrd_models.ocrd_agent.OcrdAgent`s
        """
        return [OcrdAgent(el_agent) for el_agent in self._tree.getroot().findall('mets:metsHdr/mets:agent', NS)]

    def add_agent(self, *args, **kwargs):
        """
        Add an :py:class:`ocrd_models.ocrd_agent.OcrdAgent` to the list of agents in the ``metsHdr``.
        """
        el_metsHdr = self._tree.getroot().find('.//mets:metsHdr', NS)
        if el_metsHdr is None:
            el_metsHdr = ET.Element(TAG_METS_METSHDR)
            self._tree.getroot().insert(0, el_metsHdr)
        #  assert(el_metsHdr is not None)
        el_agent = ET.SubElement(el_metsHdr, TAG_METS_AGENT)
        #  print(ET.tostring(el_metsHdr))
        return OcrdAgent(el_agent, *args, **kwargs)

    @property
    def file_groups(self):
        """
        List the `@USE` of all `mets:fileGrp` entries.
        """
        return [el.get('USE') for el in self._tree.getroot().findall('.//mets:fileGrp', NS)]

    def find_all_files(self, *args, **kwargs):
        """
        Like :py:meth:`find_files` but return a list of all results.

        Equivalent to ``list(self.find_files(...))``
        """
        return list(self.find_files(*args, **kwargs))

    # pylint: disable=multiple-statements
    def find_files(self, ID=None, fileGrp=None, pageId=None, mimetype=None, url=None, local_only=False):
        """
        Search ``mets:file`` entries in this METS document and yield results.


        The :py:attr:`ID`, :py:attr:`pageId`, :py:attr:`fileGrp`,
        :py:attr:`url` and :py:attr:`mimetype` parameters can each be either a
        literal string, or a regular expression if the string starts with
        ``//`` (double slash).

        If it is a regex, the leading ``//`` is removed and candidates are matched
        against the regex with `re.fullmatch`. If it is a literal string, comparison
        is done with string equality.

        The :py:attr:`pageId` parameter supports the numeric range operator ``..``. For
        example, to find all files in pages ``PHYS_0001`` to ``PHYS_0003``,
        ``PHYS_0001..PHYS_0003`` will be expanded to ``PHYS_0001,PHYS_0002,PHYS_0003``.

        Keyword Args:
            ID (string) : ``@ID`` of the ``mets:file``
            fileGrp (string) : ``@USE`` of the ``mets:fileGrp`` to list files of
            pageId (string) : ``@ID`` of the corresponding physical ``mets:structMap`` entry (physical page)
            url (string) : ``@xlink:href`` (URL or path) of ``mets:Flocat`` of ``mets:file``
            mimetype (string) : ``@MIMETYPE`` of ``mets:file``
            local (boolean) : Whether to restrict results to local files in the filesystem

        Yields:
            :py:class:`ocrd_models:ocrd_file:OcrdFile` instantiations
        """
        if pageId:
            if pageId.startswith(REGEX_PREFIX):
                pageIds, pageId = re.compile(pageId[REGEX_PREFIX_LEN:]), list()
            else:
                pageIds, pageId = pageId.split(','), list()
                pageIds_expanded = []
                for pageId_ in pageIds:
                    if '..' in pageId_:
                        pageIds_expanded += generate_range(*pageId_.split('..', 1))
                pageIds += pageIds_expanded
            for page in self._tree.getroot().xpath(
                '//mets:div[@TYPE="page"]', namespaces=NS):
                if (page.get('ID') in pageIds if isinstance(pageIds, list) else
                    pageIds.fullmatch(page.get('ID'))):
                    pageId.extend(
                        [fptr.get('FILEID') for fptr in page.findall('mets:fptr', NS)])
        if ID and ID.startswith(REGEX_PREFIX):
            ID = re.compile(ID[REGEX_PREFIX_LEN:])
        if fileGrp and fileGrp.startswith(REGEX_PREFIX):
            fileGrp = re.compile(fileGrp[REGEX_PREFIX_LEN:])
        if mimetype and mimetype.startswith(REGEX_PREFIX):
            mimetype = re.compile(mimetype[REGEX_PREFIX_LEN:])
        if url and url.startswith(REGEX_PREFIX):
            url = re.compile(url[REGEX_PREFIX_LEN:])
        for cand in self._tree.getroot().xpath('//mets:file', namespaces=NS):
            if ID:
                if isinstance(ID, str):
                    if not ID == cand.get('ID'): continue
                else:
                    if not ID.fullmatch(cand.get('ID')): continue

            if pageId is not None and cand.get('ID') not in pageId:
                continue

            if fileGrp:
                if isinstance(fileGrp, str):
                    if cand.getparent().get('USE') != fileGrp: continue
                else:
                    if not fileGrp.fullmatch(cand.getparent().get('USE')): continue

            if mimetype:
                if isinstance(mimetype, str):
                    if cand.get('MIMETYPE') != mimetype: continue
                else:
                    if not mimetype.fullmatch(cand.get('MIMETYPE') or ''): continue

            if url:
                cand_locat = cand.find('mets:FLocat', namespaces=NS)
                if cand_locat is None:
                    continue
                cand_url = cand_locat.get('{%s}href' % NS['xlink'])
                if isinstance(url, str):
                    if cand_url != url: continue
                else:
                    if not url.fullmatch(cand_url): continue

            f = OcrdFile(cand, mets=self)

            # If only local resources should be returned and f is not a file path: skip the file
            if local_only and not is_local_filename(f.url):
                continue
            yield f

    def add_file_group(self, fileGrp):
        """
        Add a new ``mets:fileGrp``.

        Arguments:
            fileGrp (string): ``@USE`` of the new ``mets:fileGrp``.
        """
        if ',' in fileGrp:
            raise Exception('fileGrp must not contain commas')
        el_fileSec = self._tree.getroot().find('mets:fileSec', NS)
        if el_fileSec is None:
            el_fileSec = ET.SubElement(self._tree.getroot(), TAG_METS_FILESEC)
        el_fileGrp = el_fileSec.find('mets:fileGrp[@USE="%s"]' % fileGrp, NS)
        if el_fileGrp is None:
            el_fileGrp = ET.SubElement(el_fileSec, TAG_METS_FILEGRP)
            el_fileGrp.set('USE', fileGrp)
        return el_fileGrp

    def rename_file_group(self, old, new):
        """
        Rename a ``mets:fileGrp`` by changing the ``@USE`` from :py:attr:`old` to :py:attr:`new`.
        """
        el_fileGrp = self._tree.getroot().find('mets:fileSec/mets:fileGrp[@USE="%s"]' % old, NS)
        if el_fileGrp is None:
            raise FileNotFoundError("No such fileGrp '%s'" % old)
        el_fileGrp.set('USE', new)

    def remove_file_group(self, USE, recursive=False, force=False):
        """
        Remove a ``mets:fileGrp`` (single fixed ``@USE`` or multiple regex ``@USE``)

        Arguments:
            USE (string): ``@USE`` of the ``mets:fileGrp`` to delete. Can be a regex if prefixed with ``//``
            recursive (boolean): Whether to recursively delete each ``mets:file`` in the group
            force (boolean): Do not raise an exception if ``mets:fileGrp`` does not exist
        """
        log = getLogger('ocrd_models.ocrd_mets.remove_file_group')
        el_fileSec = self._tree.getroot().find('mets:fileSec', NS)
        if el_fileSec is None:
            raise Exception("No fileSec!")
        if isinstance(USE, str):
            if USE.startswith(REGEX_PREFIX):
                use = re.compile(USE[REGEX_PREFIX_LEN:])
                for cand in el_fileSec.findall('mets:fileGrp', NS):
                    if use.fullmatch(cand.get('USE')):
                        self.remove_file_group(cand, recursive=recursive)
                return
            else:
                el_fileGrp = el_fileSec.find('mets:fileGrp[@USE="%s"]' % USE, NS)
        else:
            el_fileGrp = USE
        if el_fileGrp is None:   # pylint: disable=len-as-condition
            msg = "No such fileGrp: %s" % USE
            if force:
                log.warning(msg)
                return
            raise Exception(msg)
        files = el_fileGrp.findall('mets:file', NS)
        if files:
            if not recursive:
                raise Exception("fileGrp %s is not empty and recursive wasn't set" % USE)
            for f in files:
                self.remove_one_file(f.get('ID'))
        el_fileGrp.getparent().remove(el_fileGrp)

    def add_file(self, fileGrp, mimetype=None, url=None, ID=None, pageId=None, force=False, local_filename=None, ignore=False, **kwargs):
        """
        Instantiate and add a new :py:class:`ocrd_models.ocrd_file.OcrdFile`.

        Arguments:
            fileGrp (string): ``@USE`` of ``mets:fileGrp`` to add to
        Keyword Args:
            mimetype (string): ``@MIMETYPE`` of the ``mets:file`` to use
            url (string): ``@xlink:href`` (URL or path) of the ``mets:file`` to use
            ID (string): ``@ID`` of the ``mets:file`` to use
            pageId (string): ``@ID`` in the physical ``mets:structMap`` to link to
            force (boolean): Whether to add the file even if a ``mets:file`` with the same ``@ID`` already exists.
            ignore (boolean): Do not look for existing files at all. Shift responsibility for preventing errors from duplicate ID to the user.
            local_filename (string):
        """
        if not ID:
            raise ValueError("Must set ID of the mets:file")
        if not fileGrp:
            raise ValueError("Must set fileGrp of the mets:file")
        if not REGEX_FILE_ID.fullmatch(ID):
            raise ValueError("Invalid syntax for mets:file/@ID %s (not an xs:ID)" % ID)
        if not REGEX_FILE_ID.fullmatch(fileGrp):
            raise ValueError("Invalid syntax for mets:fileGrp/@USE %s (not an xs:ID)" % fileGrp)
        el_fileGrp = self._tree.getroot().find(".//mets:fileGrp[@USE='%s']" % (fileGrp), NS)
        if el_fileGrp is None:
            el_fileGrp = self.add_file_group(fileGrp)
        mets_file = next(self.find_files(ID=ID), None)
        if mets_file and not ignore:
            if not force:
                raise Exception("File with ID='%s' already exists" % ID)
            mets_file.url = url
            mets_file.mimetype = mimetype
            mets_file.ID = ID
            mets_file.pageId = pageId
            mets_file.local_filename = local_filename
        else:
            kwargs = {k: v for k, v in locals().items() if k in ['url', 'ID', 'mimetype', 'pageId', 'local_filename'] and v}
            mets_file = OcrdFile(ET.SubElement(el_fileGrp, TAG_METS_FILE), mets=self, **kwargs)

        return mets_file

    def remove_file(self, *args, **kwargs):
        """
        Delete each ``ocrd:file`` matching the query. Same arguments as :py:meth:`find_files`
        """
        files = list(self.find_files(*args, **kwargs))
        if files:
            for f in files:
                self.remove_one_file(f)
            if len(files) > 1:
                return files
            else:
                return files[0] # for backwards-compatibility
        if any(1 for kwarg in kwargs
               if isinstance(kwarg, str) and kwarg.startswith(REGEX_PREFIX)):
            # allow empty results if filter criteria involve a regex
            return []
        raise FileNotFoundError("File not found: %s %s" % (args, kwargs))

    def remove_one_file(self, ID):
        """
        Delete an existing :py:class:`ocrd_models.ocrd_file.OcrdFile`.

        Arguments:
            ID (string): ``@ID`` of the ``mets:file`` to delete

        Returns:
            The old :py:class:`ocrd_models.ocrd_file.OcrdFile` reference.
        """
        log = getLogger('ocrd_models.ocrd_mets.remove_one_file')
        log.info("remove_one_file(%s)" % ID)
        if isinstance(ID, OcrdFile):
            ocrd_file = ID
            ID = ocrd_file.ID
        else:
            ocrd_file = next(self.find_files(ID=ID), None)

        if not ocrd_file:
            raise FileNotFoundError("File not found: %s" % ID)

        # Delete the physical page ref
        for fptr in self._tree.getroot().findall('.//mets:fptr[@FILEID="%s"]' % ID, namespaces=NS):
            log.info("Delete fptr element %s for page '%s'", fptr, ID)
            page_div = fptr.getparent()
            page_div.remove(fptr)
            # delete empty pages
            if not page_div.getchildren():
                log.info("Delete empty page %s", page_div)
                page_div.getparent().remove(page_div)

        # Delete the file reference
        # pylint: disable=protected-access
        ocrd_file._el.getparent().remove(ocrd_file._el)

        return ocrd_file

    @property
    def physical_pages(self):
        """
        List all page IDs (the ``@ID`` of each physical ``mets:structMap`` ``mets:div``)
        """
        return self._tree.getroot().xpath(
            'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/@ID',
            namespaces=NS)

    def get_physical_pages(self, for_fileIds=None):
        """
        List all page IDs (the ``@ID`` of each physical ``mets:structMap`` ``mets:div``),
        optionally for a subset of ``mets:file`` ``@ID`` :py:attr:`for_fileIds`.
        """
        if for_fileIds is None:
            return self.physical_pages
        ret = [None] * len(for_fileIds)
        for page in self._tree.getroot().xpath(
            'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]',
                namespaces=NS):
            for fptr in page.findall('mets:fptr', NS):
                if fptr.get('FILEID') in for_fileIds:
                    ret[for_fileIds.index(fptr.get('FILEID'))] = page.get('ID')
        return ret

    def set_physical_page_for_file(self, pageId, ocrd_file, order=None, orderlabel=None):
        """
        Set the physical page ID (``@ID`` of the physical ``mets:structMap`` ``mets:div`` entry)
        corresponding to the ``mets:file`` :py:attr:`ocrd_file`, creating all structures if necessary.

        Arguments:
            pageId (string): ``@ID`` of the physical ``mets:structMap`` entry to use
            ocrd_file (object): existing :py:class:`ocrd_models.ocrd_file.OcrdFile` object
        Keyword Args:
            order (string): ``@ORDER`` to use
            orderlabel (string): ``@ORDERLABEL`` to use
        """
        #  print(pageId, ocrd_file)
        # delete any page mapping for this file.ID
        for el_fptr in self._tree.getroot().findall(
                'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/mets:fptr[@FILEID="%s"]' %
                ocrd_file.ID, namespaces=NS):
            el_fptr.getparent().remove(el_fptr)

        # find/construct as necessary
        el_structmap = self._tree.getroot().find('mets:structMap[@TYPE="PHYSICAL"]', NS)
        if el_structmap is None:
            el_structmap = ET.SubElement(self._tree.getroot(), TAG_METS_STRUCTMAP)
            el_structmap.set('TYPE', 'PHYSICAL')
        el_seqdiv = el_structmap.find('mets:div[@TYPE="physSequence"]', NS)
        if el_seqdiv is None:
            el_seqdiv = ET.SubElement(el_structmap, TAG_METS_DIV)
            el_seqdiv.set('TYPE', 'physSequence')
        el_pagediv = el_seqdiv.find('mets:div[@ID="%s"]' % pageId, NS)
        if el_pagediv is None:
            el_pagediv = ET.SubElement(el_seqdiv, TAG_METS_DIV)
            el_pagediv.set('TYPE', 'page')
            el_pagediv.set('ID', pageId)
            if order:
                el_pagediv.set('ORDER', order)
            if orderlabel:
                el_pagediv.set('ORDERLABEL', orderlabel)
        el_fptr = ET.SubElement(el_pagediv, TAG_METS_FPTR)
        el_fptr.set('FILEID', ocrd_file.ID)

    def get_physical_page_for_file(self, ocrd_file):
        """
        Get the physical page ID (``@ID`` of the physical ``mets:structMap`` ``mets:div`` entry)
        corresponding to the ``mets:file`` :py:attr:`ocrd_file`.
        """
        ret = self._tree.getroot().xpath(
            '/mets:mets/mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"][./mets:fptr[@FILEID="%s"]]/@ID' %
            ocrd_file.ID, namespaces=NS)
        if ret:
            return ret[0]

    def remove_physical_page(self, ID):
        """
        Delete page (physical ``mets:structMap`` ``mets:div`` entry ``@ID``) :py:attr:`ID`.
        """
        mets_div = self._tree.getroot().xpath(
            'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"][@ID="%s"]' % ID,
            namespaces=NS)
        if mets_div:
            mets_div[0].getparent().remove(mets_div[0])

    def remove_physical_page_fptr(self, fileId):
        """
        Delete all ``mets:fptr[@FILEID = fileId]`` to ``mets:file[@ID == fileId]`` for :py:attr:`fileId` from all ``mets:div`` entries in the physical ``mets:structMap``.
        Returns:
            List of pageIds that mets:fptrs were deleted from
        """
        mets_fptrs = self._tree.getroot().xpath(
            'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/mets:fptr[@FILEID="%s"]' % fileId,
            namespaces=NS)
        ret = []
        for mets_fptr in mets_fptrs:
            mets_div = mets_fptr.getparent()
            ret.append(mets_div.get('ID'))
            mets_div.remove(mets_fptr)
        return ret

    def merge(self, other_mets, fileGrp_mapping=None, fileId_mapping=None, pageId_mapping=None, after_add_cb=None, **kwargs):
        """
        Add all files from other_mets.

        Accepts the same kwargs as :py:func:`find_files`

        Keyword Args:
            fileGrp_mapping (dict): Map :py:attr:`other_mets` fileGrp to fileGrp in this METS
            fileId_mapping (dict): Map :py:attr:`other_mets` file ID to file ID in this METS
            pageId_mapping (dict): Map :py:attr:`other_mets` page ID to page ID in this METS
            after_add_cb (function): Callback received after file is added to the METS
        """
        if not fileGrp_mapping:
            fileGrp_mapping = {}
        if not fileId_mapping:
            fileId_mapping = {}
        if not pageId_mapping:
            pageId_mapping = {}
        for f_src in other_mets.find_files(**kwargs):
            f_dest = self.add_file(
                    fileGrp_mapping.get(f_src.fileGrp, f_src.fileGrp),
                    mimetype=f_src.mimetype,
                    url=f_src.url,
                    ID=fileId_mapping.get(f_src.ID, f_src.ID),
                    pageId=pageId_mapping.get(f_src.pageId, f_src.pageId))
            # FIXME: merge metsHdr, amdSec, dmdSec as well
            # FIXME: merge structMap logical and structLink as well
            if after_add_cb:
                after_add_cb(f_dest)


1			"""
2			API to METS
3			"""
4			from datetime import datetime
5			import re
6			from lxml import etree as ET
7
8			from ocrd_utils import (
9			is_local_filename,
10			getLogger,
11			generate_range,
12			VERSION,
13			REGEX_PREFIX,
14			REGEX_FILE_ID
15			)
16
17			from .constants import (
18			NAMESPACES as NS,
19			TAG_METS_AGENT,
20			TAG_METS_DIV,
21			TAG_METS_FILE,
22			TAG_METS_FILEGRP,
23			TAG_METS_FILESEC,
24			TAG_METS_FPTR,
25			TAG_METS_METSHDR,
26			TAG_METS_STRUCTMAP,
27			IDENTIFIER_PRIORITY,
28			TAG_MODS_IDENTIFIER,
29			METS_XML_EMPTY,
30			)
31
32			from .ocrd_xml_base import OcrdXmlDocument, ET
33			from .ocrd_file import OcrdFile
34			from .ocrd_agent import OcrdAgent
35
36			REGEX_PREFIX_LEN = len(REGEX_PREFIX)
37
38			class OcrdMets(OcrdXmlDocument):
39			"""
40			API to a single METS file
41			"""
42
43			@staticmethod
44			def empty_mets(now=None):
45			"""
46			Create an empty METS file from bundled template.
47			"""
48			if not now:
49			now = datetime.now().isoformat()
50			tpl = METS_XML_EMPTY.decode('utf-8')
51			tpl = tpl.replace('{{ VERSION }}', VERSION)
52			tpl = tpl.replace('{{ NOW }}', '%s' % now)
53			return OcrdMets(content=tpl.encode('utf-8'))
54
55			def __init__(self, **kwargs):
56			"""
57
58			"""
59			super(OcrdMets, self).__init__(**kwargs)
60
61			def __str__(self):
62			"""
63			String representation
64			"""
65			return 'OcrdMets[fileGrps=%s,files=%s]' % (self.file_groups, list(self.find_files()))
66
67			@property
68			def unique_identifier(self):
69			"""
70			Get the unique identifier by looking through ``mods:identifier``
71
72			See `specs <https://ocr-d.de/en/spec/mets#unique-id-for-the-document-processed>`_ for details.
73			"""
74			for t in IDENTIFIER_PRIORITY:
75			found = self._tree.getroot().find('.//mods:identifier[@type="%s"]' % t, NS)
76			if found is not None:
77			return found.text
78
79			@unique_identifier.setter
80			def unique_identifier(self, purl):
81			"""
82			Set the unique identifier by looking through ``mods:identifier``
83
84			See `specs <https://ocr-d.de/en/spec/mets#unique-id-for-the-document-processed>`_ for details.
85			"""
86			id_el = None
87			for t in IDENTIFIER_PRIORITY:
88			id_el = self._tree.getroot().find('.//mods:identifier[@type="%s"]' % t, NS)
89			if id_el is not None:
90			break
91			if id_el is None:
92			mods = self._tree.getroot().find('.//mods:mods', NS)
93			id_el = ET.SubElement(mods, TAG_MODS_IDENTIFIER)
94			id_el.set('type', 'purl')
95			id_el.text = purl
96
97			@property
98			def agents(self):
99			"""
100			List all :py:class:`ocrd_models.ocrd_agent.OcrdAgent`s
101			"""
102			return [OcrdAgent(el_agent) for el_agent in self._tree.getroot().findall('mets:metsHdr/mets:agent', NS)]
103
104			def add_agent(self, args, *kwargs):
105			"""
106			Add an :py:class:`ocrd_models.ocrd_agent.OcrdAgent` to the list of agents in the ``metsHdr``.
107			"""
108			el_metsHdr = self._tree.getroot().find('.//mets:metsHdr', NS)
109			if el_metsHdr is None:
110			el_metsHdr = ET.Element(TAG_METS_METSHDR)
111			self._tree.getroot().insert(0, el_metsHdr)
112			# assert(el_metsHdr is not None)
113			el_agent = ET.SubElement(el_metsHdr, TAG_METS_AGENT)
114			# print(ET.tostring(el_metsHdr))
115			return OcrdAgent(el_agent, args, *kwargs)
116
117			@property
118			def file_groups(self):
119			"""
120			List the `@USE` of all `mets:fileGrp` entries.
121			"""
122			return [el.get('USE') for el in self._tree.getroot().findall('.//mets:fileGrp', NS)]
123
124			def find_all_files(self, args, *kwargs):
125			"""
126			Like :py:meth:`find_files` but return a list of all results.
127
128			Equivalent to ``list(self.find_files(...))``
129			"""
130			return list(self.find_files(args, *kwargs))
131
132			# pylint: disable=multiple-statements
133			def find_files(self, ID=None, fileGrp=None, pageId=None, mimetype=None, url=None, local_only=False):
134			"""
135			Search ``mets:file`` entries in this METS document and yield results.
136
137
138			The :py:attr:`ID`, :py:attr:`pageId`, :py:attr:`fileGrp`,
139			:py:attr:`url` and :py:attr:`mimetype` parameters can each be either a
140			literal string, or a regular expression if the string starts with
141			``//`` (double slash).
142
143			If it is a regex, the leading ``//`` is removed and candidates are matched
144			against the regex with `re.fullmatch`. If it is a literal string, comparison
145			is done with string equality.
146
147			The :py:attr:`pageId` parameter supports the numeric range operator ``..``. For
148			example, to find all files in pages ``PHYS_0001`` to ``PHYS_0003``,
149			``PHYS_0001..PHYS_0003`` will be expanded to ``PHYS_0001,PHYS_0002,PHYS_0003``.
150
151			Keyword Args:
152			ID (string) : ``@ID`` of the ``mets:file``
153			fileGrp (string) : ``@USE`` of the ``mets:fileGrp`` to list files of
154			pageId (string) : ``@ID`` of the corresponding physical ``mets:structMap`` entry (physical page)
155			url (string) : ``@xlink:href`` (URL or path) of ``mets:Flocat`` of ``mets:file``
156			mimetype (string) : ``@MIMETYPE`` of ``mets:file``
157			local (boolean) : Whether to restrict results to local files in the filesystem
158
159			Yields:
160			:py:class:`ocrd_models:ocrd_file:OcrdFile` instantiations
161			"""
162			if pageId:
163			if pageId.startswith(REGEX_PREFIX):
164			pageIds, pageId = re.compile(pageId[REGEX_PREFIX_LEN:]), list()
165			else:
166			pageIds, pageId = pageId.split(','), list()
167			pageIds_expanded = []
168			for pageId_ in pageIds:
169			if '..' in pageId_:
170			pageIds_expanded += generate_range(*pageId_.split('..', 1))
171			pageIds += pageIds_expanded
172			for page in self._tree.getroot().xpath(
173			'//mets:div[@TYPE="page"]', namespaces=NS):
174			if (page.get('ID') in pageIds if isinstance(pageIds, list) else
175			pageIds.fullmatch(page.get('ID'))):
176			pageId.extend(
177			[fptr.get('FILEID') for fptr in page.findall('mets:fptr', NS)])
178			if ID and ID.startswith(REGEX_PREFIX):
179			ID = re.compile(ID[REGEX_PREFIX_LEN:])
180			if fileGrp and fileGrp.startswith(REGEX_PREFIX):
181			fileGrp = re.compile(fileGrp[REGEX_PREFIX_LEN:])
182			if mimetype and mimetype.startswith(REGEX_PREFIX):
183			mimetype = re.compile(mimetype[REGEX_PREFIX_LEN:])
184			if url and url.startswith(REGEX_PREFIX):
185			url = re.compile(url[REGEX_PREFIX_LEN:])
186			for cand in self._tree.getroot().xpath('//mets:file', namespaces=NS):
187			if ID:
188			if isinstance(ID, str):
189			if not ID == cand.get('ID'): continue
190			else:
191			if not ID.fullmatch(cand.get('ID')): continue
192
193			if pageId is not None and cand.get('ID') not in pageId:
194			continue
195
196			if fileGrp:
197			if isinstance(fileGrp, str):
198			if cand.getparent().get('USE') != fileGrp: continue
199			else:
200			if not fileGrp.fullmatch(cand.getparent().get('USE')): continue
201
202			if mimetype:
203			if isinstance(mimetype, str):
204			if cand.get('MIMETYPE') != mimetype: continue
205			else:
206			if not mimetype.fullmatch(cand.get('MIMETYPE') or ''): continue
207
208			if url:
209			cand_locat = cand.find('mets:FLocat', namespaces=NS)
210			if cand_locat is None:
211			continue
212			cand_url = cand_locat.get('{%s}href' % NS['xlink'])
213			if isinstance(url, str):
214			if cand_url != url: continue
215			else:
216			if not url.fullmatch(cand_url): continue
217
218			f = OcrdFile(cand, mets=self)
219
220			# If only local resources should be returned and f is not a file path: skip the file
221			if local_only and not is_local_filename(f.url):
222			continue
223			yield f
224
225			def add_file_group(self, fileGrp):
226			"""
227			Add a new ``mets:fileGrp``.
228
229			Arguments:
230			fileGrp (string): ``@USE`` of the new ``mets:fileGrp``.
231			"""
232			if ',' in fileGrp:
233			raise Exception('fileGrp must not contain commas')
234			el_fileSec = self._tree.getroot().find('mets:fileSec', NS)
235			if el_fileSec is None:
236			el_fileSec = ET.SubElement(self._tree.getroot(), TAG_METS_FILESEC)
237			el_fileGrp = el_fileSec.find('mets:fileGrp[@USE="%s"]' % fileGrp, NS)
238			if el_fileGrp is None:
239			el_fileGrp = ET.SubElement(el_fileSec, TAG_METS_FILEGRP)
240			el_fileGrp.set('USE', fileGrp)
241			return el_fileGrp
242
243			def rename_file_group(self, old, new):
244			"""
245			Rename a ``mets:fileGrp`` by changing the ``@USE`` from :py:attr:`old` to :py:attr:`new`.
246			"""
247			el_fileGrp = self._tree.getroot().find('mets:fileSec/mets:fileGrp[@USE="%s"]' % old, NS)
248			if el_fileGrp is None:
249			raise FileNotFoundError("No such fileGrp '%s'" % old)
250			el_fileGrp.set('USE', new)
251
252			def remove_file_group(self, USE, recursive=False, force=False):
253			"""
254			Remove a ``mets:fileGrp`` (single fixed ``@USE`` or multiple regex ``@USE``)
255
256			Arguments:
257			USE (string): ``@USE`` of the ``mets:fileGrp`` to delete. Can be a regex if prefixed with ``//``
258			recursive (boolean): Whether to recursively delete each ``mets:file`` in the group
259			force (boolean): Do not raise an exception if ``mets:fileGrp`` does not exist
260			"""
261			log = getLogger('ocrd_models.ocrd_mets.remove_file_group')
262			el_fileSec = self._tree.getroot().find('mets:fileSec', NS)
263			if el_fileSec is None:
264			raise Exception("No fileSec!")
265			if isinstance(USE, str):
266			if USE.startswith(REGEX_PREFIX):
267			use = re.compile(USE[REGEX_PREFIX_LEN:])
268			for cand in el_fileSec.findall('mets:fileGrp', NS):
269			if use.fullmatch(cand.get('USE')):
270			self.remove_file_group(cand, recursive=recursive)
271			return
272			else:
273			el_fileGrp = el_fileSec.find('mets:fileGrp[@USE="%s"]' % USE, NS)
274			else:
275			el_fileGrp = USE
276			if el_fileGrp is None: # pylint: disable=len-as-condition
277			msg = "No such fileGrp: %s" % USE
278			if force:
279			log.warning(msg)
280			return
281			raise Exception(msg)
282			files = el_fileGrp.findall('mets:file', NS)
283			if files:
284			if not recursive:
285			raise Exception("fileGrp %s is not empty and recursive wasn't set" % USE)
286			for f in files:
287			self.remove_one_file(f.get('ID'))
288			el_fileGrp.getparent().remove(el_fileGrp)
289
290			def add_file(self, fileGrp, mimetype=None, url=None, ID=None, pageId=None, force=False, local_filename=None, ignore=False, **kwargs):
291			"""
292			Instantiate and add a new :py:class:`ocrd_models.ocrd_file.OcrdFile`.
293
294			Arguments:
295			fileGrp (string): ``@USE`` of ``mets:fileGrp`` to add to
296			Keyword Args:
297			mimetype (string): ``@MIMETYPE`` of the ``mets:file`` to use
298			url (string): ``@xlink:href`` (URL or path) of the ``mets:file`` to use
299			ID (string): ``@ID`` of the ``mets:file`` to use
300			pageId (string): ``@ID`` in the physical ``mets:structMap`` to link to
301			force (boolean): Whether to add the file even if a ``mets:file`` with the same ``@ID`` already exists.
302			ignore (boolean): Do not look for existing files at all. Shift responsibility for preventing errors from duplicate ID to the user.
303			local_filename (string):
304			"""
305			if not ID:
306			raise ValueError("Must set ID of the mets:file")
307			if not fileGrp:
308			raise ValueError("Must set fileGrp of the mets:file")
309			if not REGEX_FILE_ID.fullmatch(ID):
310			raise ValueError("Invalid syntax for mets:file/@ID %s (not an xs:ID)" % ID)
311			if not REGEX_FILE_ID.fullmatch(fileGrp):
312			raise ValueError("Invalid syntax for mets:fileGrp/@USE %s (not an xs:ID)" % fileGrp)
313			el_fileGrp = self._tree.getroot().find(".//mets:fileGrp[@USE='%s']" % (fileGrp), NS)
314			if el_fileGrp is None:
315			el_fileGrp = self.add_file_group(fileGrp)
316			mets_file = next(self.find_files(ID=ID), None)
317			if mets_file and not ignore:
318			if not force:
319			raise Exception("File with ID='%s' already exists" % ID)
320			mets_file.url = url
321			mets_file.mimetype = mimetype
322			mets_file.ID = ID
323			mets_file.pageId = pageId
324			mets_file.local_filename = local_filename
325			else:
326			kwargs = {k: v for k, v in locals().items() if k in ['url', 'ID', 'mimetype', 'pageId', 'local_filename'] and v}
327			mets_file = OcrdFile(ET.SubElement(el_fileGrp, TAG_METS_FILE), mets=self, **kwargs)
328
329			return mets_file
330
331			def remove_file(self, args, *kwargs):
332			"""
333			Delete each ``ocrd:file`` matching the query. Same arguments as :py:meth:`find_files`
334			"""
335			files = list(self.find_files(args, *kwargs))
336			if files:
337			for f in files:
338			self.remove_one_file(f)
339			if len(files) > 1:
340			return files
341			else:
342			return files[0] # for backwards-compatibility
343			if any(1 for kwarg in kwargs
344			if isinstance(kwarg, str) and kwarg.startswith(REGEX_PREFIX)):
345			# allow empty results if filter criteria involve a regex
346			return []
347			raise FileNotFoundError("File not found: %s %s" % (args, kwargs))
348
349			def remove_one_file(self, ID):
350			"""
351			Delete an existing :py:class:`ocrd_models.ocrd_file.OcrdFile`.
352
353			Arguments:
354			ID (string): ``@ID`` of the ``mets:file`` to delete
355
356			Returns:
357			The old :py:class:`ocrd_models.ocrd_file.OcrdFile` reference.
358			"""
359			log = getLogger('ocrd_models.ocrd_mets.remove_one_file')
360			log.info("remove_one_file(%s)" % ID)
361			if isinstance(ID, OcrdFile):
362			ocrd_file = ID
363			ID = ocrd_file.ID
364			else:
365			ocrd_file = next(self.find_files(ID=ID), None)
366
367			if not ocrd_file:
368			raise FileNotFoundError("File not found: %s" % ID)
369
370			# Delete the physical page ref
371			for fptr in self._tree.getroot().findall('.//mets:fptr[@FILEID="%s"]' % ID, namespaces=NS):
372			log.info("Delete fptr element %s for page '%s'", fptr, ID)
373			page_div = fptr.getparent()
374			page_div.remove(fptr)
375			# delete empty pages
376			if not page_div.getchildren():
377			log.info("Delete empty page %s", page_div)
378			page_div.getparent().remove(page_div)
379
380			# Delete the file reference
381			# pylint: disable=protected-access
382			ocrd_file._el.getparent().remove(ocrd_file._el)
383
384			return ocrd_file
385
386			@property
387			def physical_pages(self):
388			"""
389			List all page IDs (the ``@ID`` of each physical ``mets:structMap`` ``mets:div``)
390			"""
391			return self._tree.getroot().xpath(
392			'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/@ID',
393			namespaces=NS)
394
395			def get_physical_pages(self, for_fileIds=None):
396			"""
397			List all page IDs (the ``@ID`` of each physical ``mets:structMap`` ``mets:div``),
398			optionally for a subset of ``mets:file`` ``@ID`` :py:attr:`for_fileIds`.
399			"""
400			if for_fileIds is None:
401			return self.physical_pages
402			ret = [None] * len(for_fileIds)
403			for page in self._tree.getroot().xpath(
404			'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]',
405			namespaces=NS):
406			for fptr in page.findall('mets:fptr', NS):
407			if fptr.get('FILEID') in for_fileIds:
408			ret[for_fileIds.index(fptr.get('FILEID'))] = page.get('ID')
409			return ret
410
411			def set_physical_page_for_file(self, pageId, ocrd_file, order=None, orderlabel=None):
412			"""
413			Set the physical page ID (``@ID`` of the physical ``mets:structMap`` ``mets:div`` entry)
414			corresponding to the ``mets:file`` :py:attr:`ocrd_file`, creating all structures if necessary.
415
416			Arguments:
417			pageId (string): ``@ID`` of the physical ``mets:structMap`` entry to use
418			ocrd_file (object): existing :py:class:`ocrd_models.ocrd_file.OcrdFile` object
419			Keyword Args:
420			order (string): ``@ORDER`` to use
421			orderlabel (string): ``@ORDERLABEL`` to use
422			"""
423			# print(pageId, ocrd_file)
424			# delete any page mapping for this file.ID
425			for el_fptr in self._tree.getroot().findall(
426			'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/mets:fptr[@FILEID="%s"]' %
427			ocrd_file.ID, namespaces=NS):
428			el_fptr.getparent().remove(el_fptr)
429
430			# find/construct as necessary
431			el_structmap = self._tree.getroot().find('mets:structMap[@TYPE="PHYSICAL"]', NS)
432			if el_structmap is None:
433			el_structmap = ET.SubElement(self._tree.getroot(), TAG_METS_STRUCTMAP)
434			el_structmap.set('TYPE', 'PHYSICAL')
435			el_seqdiv = el_structmap.find('mets:div[@TYPE="physSequence"]', NS)
436			if el_seqdiv is None:
437			el_seqdiv = ET.SubElement(el_structmap, TAG_METS_DIV)
438			el_seqdiv.set('TYPE', 'physSequence')
439			el_pagediv = el_seqdiv.find('mets:div[@ID="%s"]' % pageId, NS)
440			if el_pagediv is None:
441			el_pagediv = ET.SubElement(el_seqdiv, TAG_METS_DIV)
442			el_pagediv.set('TYPE', 'page')
443			el_pagediv.set('ID', pageId)
444			if order:
445			el_pagediv.set('ORDER', order)
446			if orderlabel:
447			el_pagediv.set('ORDERLABEL', orderlabel)
448			el_fptr = ET.SubElement(el_pagediv, TAG_METS_FPTR)
449			el_fptr.set('FILEID', ocrd_file.ID)
450
451			def get_physical_page_for_file(self, ocrd_file):
452			"""
453			Get the physical page ID (``@ID`` of the physical ``mets:structMap`` ``mets:div`` entry)
454			corresponding to the ``mets:file`` :py:attr:`ocrd_file`.
455			"""
456			ret = self._tree.getroot().xpath(
457			'/mets:mets/mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"][./mets:fptr[@FILEID="%s"]]/@ID' %
458			ocrd_file.ID, namespaces=NS)
459			if ret:
460			return ret[0]
461
462			def remove_physical_page(self, ID):
463			"""
464			Delete page (physical ``mets:structMap`` ``mets:div`` entry ``@ID``) :py:attr:`ID`.
465			"""
466			mets_div = self._tree.getroot().xpath(
467			'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"][@ID="%s"]' % ID,
468			namespaces=NS)
469			if mets_div:
470			mets_div[0].getparent().remove(mets_div[0])
471
472			def remove_physical_page_fptr(self, fileId):
473			"""
474			Delete all ``mets:fptr[@FILEID = fileId]`` to ``mets:file[@ID == fileId]`` for :py:attr:`fileId` from all ``mets:div`` entries in the physical ``mets:structMap``.
475			Returns:
476			List of pageIds that mets:fptrs were deleted from
477			"""
478			mets_fptrs = self._tree.getroot().xpath(
479			'mets:structMap[@TYPE="PHYSICAL"]/mets:div[@TYPE="physSequence"]/mets:div[@TYPE="page"]/mets:fptr[@FILEID="%s"]' % fileId,
480			namespaces=NS)
481			ret = []
482			for mets_fptr in mets_fptrs:
483			mets_div = mets_fptr.getparent()
484			ret.append(mets_div.get('ID'))
485			mets_div.remove(mets_fptr)
486			return ret
487
488			def merge(self, other_mets, fileGrp_mapping=None, fileId_mapping=None, pageId_mapping=None, after_add_cb=None, **kwargs):
489			"""
490			Add all files from other_mets.
491
492			Accepts the same kwargs as :py:func:`find_files`
493
494			Keyword Args:
495			fileGrp_mapping (dict): Map :py:attr:`other_mets` fileGrp to fileGrp in this METS
496			fileId_mapping (dict): Map :py:attr:`other_mets` file ID to file ID in this METS
497			pageId_mapping (dict): Map :py:attr:`other_mets` page ID to page ID in this METS
498			after_add_cb (function): Callback received after file is added to the METS
499			"""
500			if not fileGrp_mapping:
501			fileGrp_mapping = {}
502			if not fileId_mapping:
503			fileId_mapping = {}
504			if not pageId_mapping:
505			pageId_mapping = {}
506			for f_src in other_mets.find_files(**kwargs):
507			f_dest = self.add_file(
508			fileGrp_mapping.get(f_src.fileGrp, f_src.fileGrp),
509			mimetype=f_src.mimetype,
510			url=f_src.url,
511			ID=fileId_mapping.get(f_src.ID, f_src.ID),
512			pageId=pageId_mapping.get(f_src.pageId, f_src.pageId))
513			# FIXME: merge metsHdr, amdSec, dmdSec as well
514			# FIXME: merge structMap logical and structLink as well
515			if after_add_cb:
516			after_add_cb(f_dest)
517

OCR-D / core

Pull Request — master (#889)

ocrd_models.ocrd_mets.OcrdMets.merge() B

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