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""" |
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Helper methods for running and documenting processors |
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""" |
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from time import perf_counter, process_time |
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from functools import lru_cache |
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import json |
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import inspect |
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from subprocess import run |
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from typing import List, Optional |
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from click import wrap_text |
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from ocrd.workspace import Workspace |
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from ocrd_utils import freeze_args, getLogger, config, setOverrideLogLevel, getLevelName, sparkline |
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__all__ = [ |
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'generate_processor_help', |
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'run_cli', |
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'run_processor' |
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] |
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def _get_workspace(workspace=None, resolver=None, mets_url=None, working_dir=None, mets_server_url=None): |
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if workspace is None: |
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if resolver is None: |
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raise Exception("Need to pass a resolver to create a workspace") |
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if mets_url is None: |
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raise Exception("Need to pass mets_url to create a workspace") |
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workspace = resolver.workspace_from_url(mets_url, dst_dir=working_dir, mets_server_url=mets_server_url) |
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return workspace |
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def run_processor( |
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processorClass, |
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mets_url=None, |
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resolver=None, |
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workspace=None, |
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page_id=None, |
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log_level=None, |
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input_file_grp=None, |
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output_file_grp=None, |
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parameter=None, |
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working_dir=None, |
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mets_server_url=None, |
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instance_caching=False |
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): # pylint: disable=too-many-locals |
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""" |
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Instantiate a Pythonic processor, open a workspace, run the processor and save the workspace. |
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If :py:attr:`workspace` is not none, reuse that. Otherwise, instantiate an |
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:py:class:`~ocrd.Workspace` for :py:attr:`mets_url` (and :py:attr:`working_dir`) |
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by using :py:meth:`ocrd.Resolver.workspace_from_url` (i.e. open or clone local workspace). |
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Instantiate a Python object for :py:attr:`processorClass`, passing: |
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- the workspace, |
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- :py:attr:`page_id` |
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- :py:attr:`input_file_grp` |
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- :py:attr:`output_file_grp` |
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- :py:attr:`parameter` (after applying any :py:attr:`parameter_override` settings) |
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Warning: Avoid setting the `instance_caching` flag to True. It may have unexpected side effects. |
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This flag is used for an experimental feature we would like to adopt in future. |
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Run the processor on the workspace (creating output files in the filesystem). |
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Finally, write back the workspace (updating the METS in the filesystem). |
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Args: |
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processorClass (object): Python class of the module processor. |
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""" |
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if log_level: |
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setOverrideLogLevel(log_level) |
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workspace = _get_workspace( |
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workspace, |
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resolver, |
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mets_url, |
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working_dir, |
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mets_server_url |
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) |
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log = getLogger('ocrd.processor.helpers.run_processor') |
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log.debug("Running processor %s", processorClass) |
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processor = get_processor( |
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processorClass, |
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parameter=parameter, |
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workspace=None, |
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page_id=page_id, |
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input_file_grp=input_file_grp, |
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output_file_grp=output_file_grp, |
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instance_caching=instance_caching |
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) |
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ocrd_tool = processor.ocrd_tool |
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name = '%s v%s' % (ocrd_tool['executable'], processor.version) |
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otherrole = ocrd_tool['steps'][0] |
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logProfile = getLogger('ocrd.process.profile') |
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log.debug("Processor instance %s (%s doing %s)", processor, name, otherrole) |
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t0_wall = perf_counter() |
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t0_cpu = process_time() |
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if any(x in config.OCRD_PROFILE for x in ['RSS', 'PSS']): |
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backend = 'psutil_pss' if 'PSS' in config.OCRD_PROFILE else 'psutil' |
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from memory_profiler import memory_usage # pylint: disable=import-outside-toplevel |
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try: |
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mem_usage = memory_usage(proc=(processor.process_workspace, [workspace], {}), |
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# only run process once |
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max_iterations=1, |
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interval=.1, timeout=None, timestamps=True, |
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# include sub-processes |
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multiprocess=True, include_children=True, |
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# get proportional set size instead of RSS |
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backend=backend) |
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except Exception as err: |
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log.exception("Failure in processor '%s'" % ocrd_tool['executable']) |
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raise err |
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mem_usage_values = [mem for mem, _ in mem_usage] |
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mem_output = 'memory consumption: ' |
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mem_output += sparkline(mem_usage_values) |
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mem_output += ' max: %.2f MiB min: %.2f MiB' % (max(mem_usage_values), min(mem_usage_values)) |
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logProfile.info(mem_output) |
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else: |
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try: |
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processor.process_workspace(workspace) |
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except Exception as err: |
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log.exception("Failure in processor '%s'" % ocrd_tool['executable']) |
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raise err |
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t1_wall = perf_counter() - t0_wall |
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t1_cpu = process_time() - t0_cpu |
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logProfile.info("Executing processor '%s' took %fs (wall) %fs (CPU)( [--input-file-grp='%s' --output-file-grp='%s' --parameter='%s' --page-id='%s']" % ( |
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ocrd_tool['executable'], |
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t1_wall, |
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t1_cpu, |
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processor.input_file_grp or '', |
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processor.output_file_grp or '', |
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json.dumps(processor.parameter) or '', |
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processor.page_id or '' |
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)) |
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workspace.mets.add_agent( |
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name=name, |
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_type='OTHER', |
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othertype='SOFTWARE', |
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role='OTHER', |
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otherrole=otherrole, |
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notes=[({'option': 'input-file-grp'}, processor.input_file_grp or ''), |
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({'option': 'output-file-grp'}, processor.output_file_grp or ''), |
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({'option': 'parameter'}, json.dumps(processor.parameter or '')), |
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({'option': 'page-id'}, processor.page_id or '')] |
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) |
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workspace.save_mets() |
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return processor |
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151
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152
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def run_cli( |
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executable, |
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mets_url=None, |
155
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resolver=None, |
156
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workspace=None, |
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page_id=None, |
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overwrite=None, |
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debug=None, |
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log_level=None, |
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log_filename=None, |
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input_file_grp=None, |
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output_file_grp=None, |
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parameter=None, |
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working_dir=None, |
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mets_server_url=None, |
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): |
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""" |
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Open a workspace and run a processor on the command line. |
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If :py:attr:`workspace` is not none, reuse that. Otherwise, instantiate an |
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:py:class:`~ocrd.Workspace` for :py:attr:`mets_url` (and :py:attr:`working_dir`) |
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by using :py:meth:`ocrd.Resolver.workspace_from_url` (i.e. open or clone local workspace). |
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Run the processor CLI :py:attr:`executable` on the workspace, passing: |
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- the workspace, |
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- :py:attr:`page_id` |
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- :py:attr:`input_file_grp` |
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- :py:attr:`output_file_grp` |
180
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- :py:attr:`parameter` (after applying any :py:attr:`parameter_override` settings) |
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182
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(Will create output files and update the in the filesystem). |
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184
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Args: |
185
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executable (string): Executable name of the module processor. |
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""" |
187
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workspace = _get_workspace(workspace, resolver, mets_url, working_dir) |
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args = [executable, '--working-dir', workspace.directory] |
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args += ['--mets', mets_url] |
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if log_level: |
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args += ['--log-level', log_level if isinstance(log_level, str) else getLevelName(log_level)] |
192
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if page_id: |
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args += ['--page-id', page_id] |
194
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if input_file_grp: |
195
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args += ['--input-file-grp', input_file_grp] |
196
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if output_file_grp: |
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args += ['--output-file-grp', output_file_grp] |
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if parameter: |
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args += ['--parameter', parameter] |
200
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if overwrite: |
201
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args += ['--overwrite'] |
202
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if debug: |
203
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args += ['--debug'] |
204
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if mets_server_url: |
205
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args += ['--mets-server-url', mets_server_url] |
206
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log = getLogger('ocrd.processor.helpers.run_cli') |
207
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log.debug("Running subprocess '%s'", ' '.join(args)) |
208
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if not log_filename: |
209
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result = run(args, check=False) |
210
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else: |
211
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with open(log_filename, 'a', encoding='utf-8') as file_desc: |
212
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result = run(args, check=False, stdout=file_desc, stderr=file_desc) |
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return result.returncode |
214
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215
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216
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def generate_processor_help(ocrd_tool, processor_instance=None, subcommand=None): |
217
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"""Generate a string describing the full CLI of this processor including params. |
218
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|
219
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Args: |
220
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ocrd_tool (dict): this processor's ``tools`` section of the module's ``ocrd-tool.json`` |
221
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processor_instance (object, optional): the processor implementation |
222
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(for adding any module/class/function docstrings) |
223
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subcommand (string): 'worker' or 'server' |
224
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""" |
225
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doc_help = '' |
226
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if processor_instance: |
227
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module = inspect.getmodule(processor_instance) |
228
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if module and module.__doc__: |
229
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doc_help += '\n' + inspect.cleandoc(module.__doc__) + '\n' |
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if processor_instance.__doc__: |
231
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doc_help += '\n' + inspect.cleandoc(processor_instance.__doc__) + '\n' |
232
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if processor_instance.process_workspace.__doc__: |
233
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doc_help += '\n' + inspect.cleandoc(processor_instance.process_workspace.__doc__) + '\n' |
234
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if processor_instance.process.__doc__: |
235
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doc_help += '\n' + inspect.cleandoc(processor_instance.process.__doc__) + '\n' |
236
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if doc_help: |
237
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doc_help = '\n\n' + wrap_text(doc_help, width=72, |
238
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initial_indent=' > ', |
239
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subsequent_indent=' > ', |
240
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preserve_paragraphs=True) |
241
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subcommands = '''\ |
242
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worker Start a processing worker rather than do local processing |
243
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server Start a processor server rather than do local processing |
244
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''' |
245
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|
246
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processing_worker_options = '''\ |
247
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--queue The RabbitMQ server address in format |
248
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"amqp://{user}:{pass}@{host}:{port}/{vhost}" |
249
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[amqp://admin:admin@localhost:5672] |
250
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--database The MongoDB server address in format |
251
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"mongodb://{host}:{port}" |
252
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[mongodb://localhost:27018] |
253
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--log-filename Filename to redirect STDOUT/STDERR to, |
254
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if specified. |
255
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''' |
256
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|
257
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processing_server_options = '''\ |
258
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--address The Processor server address in format |
259
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"{host}:{port}" |
260
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--database The MongoDB server address in format |
261
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"mongodb://{host}:{port}" |
262
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[mongodb://localhost:27018] |
263
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''' |
264
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|
265
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|
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processing_options = '''\ |
266
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-m, --mets URL-PATH URL or file path of METS to process [./mets.xml] |
267
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-w, --working-dir PATH Working directory of local workspace [dirname(URL-PATH)] |
268
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-I, --input-file-grp USE File group(s) used as input |
269
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|
-O, --output-file-grp USE File group(s) used as output |
270
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-g, --page-id ID Physical page ID(s) to process instead of full document [] |
271
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|
--overwrite Remove existing output pages/images |
272
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(with "--page-id", remove only those). |
273
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|
|
Short-hand for OCRD_EXISTING_OUTPUT=OVERWRITE |
274
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|
|
--debug Abort on any errors with full stack trace. |
275
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|
|
Short-hand for OCRD_MISSING_OUTPUT=ABORT |
276
|
|
|
--profile Enable profiling |
277
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|
|
--profile-file PROF-PATH Write cProfile stats to PROF-PATH. Implies "--profile" |
278
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|
|
-p, --parameter JSON-PATH Parameters, either verbatim JSON string |
279
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|
|
or JSON file path |
280
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|
|
-P, --param-override KEY VAL Override a single JSON object key-value pair, |
281
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|
|
taking precedence over --parameter |
282
|
|
|
-U, --mets-server-url URL URL of a METS Server for parallel incremental access to METS |
283
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|
|
If URL starts with http:// start an HTTP server there, |
284
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|
otherwise URL is a path to an on-demand-created unix socket |
285
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|
|
-l, --log-level [OFF|ERROR|WARN|INFO|DEBUG|TRACE] |
286
|
|
|
Override log level globally [INFO] |
287
|
|
|
''' |
288
|
|
|
|
289
|
|
|
information_options = '''\ |
290
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|
|
-C, --show-resource RESNAME Dump the content of processor resource RESNAME |
291
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|
|
-L, --list-resources List names of processor resources |
292
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|
|
-J, --dump-json Dump tool description as JSON |
293
|
|
|
-D, --dump-module-dir Show the 'module' resource location path for this processor |
294
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|
|
-h, --help Show this message |
295
|
|
|
-V, --version Show version |
296
|
|
|
''' |
297
|
|
|
|
298
|
|
|
parameter_help = '' |
299
|
|
|
if 'parameters' not in ocrd_tool or not ocrd_tool['parameters']: |
300
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|
|
parameter_help = ' NONE\n' |
301
|
|
|
else: |
302
|
|
|
def wrap(s): |
303
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|
|
return wrap_text(s, initial_indent=' '*3, |
304
|
|
|
subsequent_indent=' '*4, |
305
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|
|
width=72, preserve_paragraphs=True) |
306
|
|
|
for param_name, param in ocrd_tool['parameters'].items(): |
307
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|
|
parameter_help += wrap('"%s" [%s%s]' % ( |
308
|
|
|
param_name, |
309
|
|
|
param['type'], |
310
|
|
|
' - REQUIRED' if 'required' in param and param['required'] else |
311
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|
|
' - %s' % json.dumps(param['default']) if 'default' in param else '')) |
312
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|
|
parameter_help += '\n ' + wrap(param['description']) |
313
|
|
|
if 'enum' in param: |
314
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|
|
parameter_help += '\n ' + wrap('Possible values: %s' % json.dumps(param['enum'])) |
315
|
|
|
parameter_help += "\n" |
316
|
|
|
|
317
|
|
|
if not subcommand: |
318
|
|
|
return f'''\ |
319
|
|
|
Usage: {ocrd_tool['executable']} [worker|server] [OPTIONS] |
320
|
|
|
|
321
|
|
|
{ocrd_tool['description']}{doc_help} |
322
|
|
|
|
323
|
|
|
Subcommands: |
324
|
|
|
{subcommands} |
325
|
|
|
Options for processing: |
326
|
|
|
{processing_options} |
327
|
|
|
Options for information: |
328
|
|
|
{information_options} |
329
|
|
|
Parameters: |
330
|
|
|
{parameter_help} |
331
|
|
|
''' |
332
|
|
|
elif subcommand == 'worker': |
333
|
|
|
return f'''\ |
334
|
|
|
Usage: {ocrd_tool['executable']} worker [OPTIONS] |
335
|
|
|
|
336
|
|
|
Run {ocrd_tool['executable']} as a processing worker. |
337
|
|
|
|
338
|
|
|
{ocrd_tool['description']}{doc_help} |
339
|
|
|
|
340
|
|
|
Options: |
341
|
|
|
{processing_worker_options} |
342
|
|
|
''' |
343
|
|
|
elif subcommand == 'server': |
344
|
|
|
return f'''\ |
345
|
|
|
Usage: {ocrd_tool['executable']} server [OPTIONS] |
346
|
|
|
|
347
|
|
|
Run {ocrd_tool['executable']} as a processor sever. |
348
|
|
|
|
349
|
|
|
{ocrd_tool['description']}{doc_help} |
350
|
|
|
|
351
|
|
|
Options: |
352
|
|
|
{processing_server_options} |
353
|
|
|
''' |
354
|
|
|
else: |
355
|
|
|
pass |
356
|
|
|
|
357
|
|
|
|
358
|
|
|
# not decorated here but at runtime (on first use) |
359
|
|
|
#@freeze_args |
360
|
|
|
#@lru_cache(maxsize=config.OCRD_MAX_PROCESSOR_CACHE) |
361
|
|
|
def get_cached_processor(parameter: dict, processor_class): |
362
|
|
|
""" |
363
|
|
|
Call this function to get back an instance of a processor. |
364
|
|
|
The results are cached based on the parameters. |
365
|
|
|
Args: |
366
|
|
|
parameter (dict): a dictionary of parameters. |
367
|
|
|
processor_class: the concrete `:py:class:~ocrd.Processor` class. |
368
|
|
|
Returns: |
369
|
|
|
When the concrete class of the processor is unknown, `None` is returned. |
370
|
|
|
Otherwise, an instance of the `:py:class:~ocrd.Processor` is returned. |
371
|
|
|
""" |
372
|
|
|
if processor_class: |
373
|
|
|
processor = processor_class(None, parameter=dict(parameter)) |
374
|
|
|
return processor |
375
|
|
|
return None |
376
|
|
|
|
377
|
|
|
def get_processor( |
378
|
|
|
processor_class, |
379
|
|
|
parameter: Optional[dict] = None, |
380
|
|
|
workspace: Workspace = None, |
381
|
|
|
page_id: str = None, |
382
|
|
|
input_file_grp: List[str] = None, |
383
|
|
|
output_file_grp: List[str] = None, |
384
|
|
|
instance_caching: bool = False, |
385
|
|
|
): |
386
|
|
|
if processor_class: |
387
|
|
|
if parameter is None: |
388
|
|
|
parameter = {} |
389
|
|
|
if instance_caching: |
390
|
|
|
global get_cached_processor |
391
|
|
|
if not hasattr(get_cached_processor, '__wrapped__'): |
392
|
|
|
# first call: wrap |
393
|
|
|
if processor_class.max_instances < 0: |
394
|
|
|
maxsize = config.OCRD_MAX_PROCESSOR_CACHE |
395
|
|
|
else: |
396
|
|
|
maxsize = min(config.OCRD_MAX_PROCESSOR_CACHE, processor_class.max_instances) |
397
|
|
|
# wrapping in call cache |
398
|
|
|
# wrapping dict into frozendict (from https://github.com/OCR-D/core/pull/884) |
399
|
|
|
get_cached_processor = freeze_args(lru_cache(maxsize=maxsize)(get_cached_processor)) |
400
|
|
|
processor = get_cached_processor(parameter, processor_class) |
401
|
|
|
else: |
402
|
|
|
# avoid passing workspace already (deprecated chdir behaviour) |
403
|
|
|
processor = processor_class(None, parameter=parameter) |
404
|
|
|
# set current processing parameters |
405
|
|
|
processor.workspace = workspace |
406
|
|
|
processor.page_id = page_id |
407
|
|
|
processor.input_file_grp = input_file_grp |
408
|
|
|
processor.output_file_grp = output_file_grp |
409
|
|
|
return processor |
410
|
|
|
raise ValueError("Processor class is not known") |
411
|
|
|
|