| Total Complexity | 180 |
| Total Lines | 1302 |
| Duplicated Lines | 1.54 % |
| Changes | 0 | ||
Duplicate code is one of the most pungent code smells. A rule that is often used is to re-structure code once it is duplicated in three or more places.
Common duplication problems, and corresponding solutions are:
Complex classes like ocrd.processor.base often do a lot of different things. To break such a class down, we need to identify a cohesive component within that class. A common approach to find such a component is to look for fields/methods that share the same prefixes, or suffixes.
Once you have determined the fields that belong together, you can apply the Extract Class refactoring. If the component makes sense as a sub-class, Extract Subclass is also a candidate, and is often faster.
| 1 | """ |
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| 2 | Processor base class and helper functions. |
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| 3 | """ |
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| 4 | |||
| 5 | __all__ = [ |
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| 6 | 'Processor', |
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| 7 | 'generate_processor_help', |
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| 8 | 'run_cli', |
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| 9 | 'run_processor' |
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| 10 | ] |
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| 11 | |||
| 12 | from functools import cached_property |
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| 13 | from os.path import exists, join |
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| 14 | from shutil import copyfileobj |
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| 15 | import json |
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| 16 | import os |
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| 17 | from os import getcwd |
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| 18 | from pathlib import Path |
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| 19 | from typing import Any, Dict, List, Optional, Tuple, Union, get_args |
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| 20 | import sys |
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| 21 | import logging |
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| 22 | import logging.handlers |
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| 23 | import inspect |
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| 24 | import tarfile |
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| 25 | import io |
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| 26 | from collections import defaultdict |
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| 27 | from frozendict import frozendict |
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| 28 | # concurrent.futures is buggy in py38, |
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| 29 | # this is where the fixes came from: |
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| 30 | from loky import Future, ProcessPoolExecutor |
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| 31 | import multiprocessing as mp |
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| 32 | from threading import Timer |
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| 33 | from _thread import interrupt_main |
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| 34 | |||
| 35 | from click import wrap_text |
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| 36 | from deprecated import deprecated |
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| 37 | from requests import HTTPError |
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| 38 | |||
| 39 | from ..workspace import Workspace |
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| 40 | from ..mets_server import ClientSideOcrdMets |
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| 41 | from ocrd_models.ocrd_file import OcrdFileType |
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| 42 | from .ocrd_page_result import OcrdPageResult |
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| 43 | from ocrd_utils import ( |
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| 44 | VERSION as OCRD_VERSION, |
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| 45 | MIMETYPE_PAGE, |
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| 46 | MIME_TO_EXT, |
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| 47 | config, |
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| 48 | getLogger, |
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| 49 | list_resource_candidates, |
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| 50 | pushd_popd, |
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| 51 | list_all_resources, |
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| 52 | get_processor_resource_types, |
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| 53 | resource_filename, |
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| 54 | parse_json_file_with_comments, |
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| 55 | make_file_id, |
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| 56 | deprecation_warning |
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| 57 | ) |
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| 58 | from ocrd_validators import ParameterValidator |
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| 59 | from ocrd_models.ocrd_page import ( |
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| 60 | PageType, |
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| 61 | AlternativeImageType, |
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| 62 | MetadataItemType, |
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| 63 | LabelType, |
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| 64 | LabelsType, |
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| 65 | OcrdPage, |
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| 66 | to_xml, |
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| 67 | ) |
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| 68 | from ocrd_modelfactory import page_from_file |
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| 69 | from ocrd_validators.ocrd_tool_validator import OcrdToolValidator |
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| 70 | |||
| 71 | # XXX imports must remain for backwards-compatibility |
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| 72 | from .helpers import run_cli, run_processor # pylint: disable=unused-import |
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| 73 | |||
| 74 | |||
| 75 | class ResourceNotFoundError(FileNotFoundError): |
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| 76 | """ |
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| 77 | An exception signifying the requested processor resource |
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| 78 | cannot be resolved. |
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| 79 | """ |
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| 80 | def __init__(self, name, executable): |
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| 81 | self.name = name |
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| 82 | self.executable = executable |
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| 83 | self.message = (f"Could not find resource '{name}' for executable '{executable}'. " |
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| 84 | f"Try 'ocrd resmgr download {executable} {name}' to download this resource.") |
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| 85 | super().__init__(self.message) |
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| 86 | |||
| 87 | class NonUniqueInputFile(ValueError): |
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| 88 | """ |
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| 89 | An exception signifying the specified fileGrp / pageId / mimetype |
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| 90 | selector yields multiple PAGE files, or no PAGE files but multiple images, |
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| 91 | or multiple files of that mimetype. |
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| 92 | """ |
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| 93 | def __init__(self, fileGrp, pageId, mimetype): |
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| 94 | self.fileGrp = fileGrp |
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| 95 | self.pageId = pageId |
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| 96 | self.mimetype = mimetype |
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| 97 | self.message = (f"Could not determine unique input file for fileGrp {fileGrp} " |
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| 98 | f"and pageId {pageId} under mimetype {mimetype or 'PAGE+image(s)'}") |
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| 99 | super().__init__(self.message) |
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| 100 | |||
| 101 | class MissingInputFile(ValueError): |
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| 102 | """ |
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| 103 | An exception signifying the specified fileGrp / pageId / mimetype |
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| 104 | selector yields no PAGE files, or no PAGE and no image files, |
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| 105 | or no files of that mimetype. |
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| 106 | """ |
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| 107 | def __init__(self, fileGrp, pageId, mimetype): |
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| 108 | self.fileGrp = fileGrp |
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| 109 | self.pageId = pageId |
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| 110 | self.mimetype = mimetype |
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| 111 | self.message = (f"Could not find input file for fileGrp {fileGrp} " |
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| 112 | f"and pageId {pageId} under mimetype {mimetype or 'PAGE+image(s)'}") |
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| 113 | super().__init__(self.message) |
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| 114 | |||
| 115 | class DummyFuture: |
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| 116 | """ |
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| 117 | Mimics some of `concurrent.futures.Future` but runs immediately. |
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| 118 | """ |
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| 119 | def __init__(self, fn, *args, **kwargs): |
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| 120 | self.fn = fn |
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| 121 | self.args = args |
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| 122 | self.kwargs = kwargs |
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| 123 | def result(self): |
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| 124 | return self.fn(*self.args, **self.kwargs) |
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| 125 | class DummyExecutor: |
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| 126 | """ |
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| 127 | Mimics some of `concurrent.futures.ProcessPoolExecutor` but runs |
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| 128 | everything immediately in this process. |
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| 129 | """ |
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| 130 | def __init__(self, initializer=None, initargs=(), **kwargs): |
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| 131 | initializer(*initargs) |
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| 132 | def shutdown(self, **kwargs): |
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| 133 | pass |
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| 134 | def submit(self, fn, *args, **kwargs) -> DummyFuture: |
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| 135 | return DummyFuture(fn, *args, **kwargs) |
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| 136 | |||
| 137 | TFuture = Union[DummyFuture, Future] |
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| 138 | TExecutor = Union[DummyExecutor, ProcessPoolExecutor] |
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| 139 | |||
| 140 | class Processor(): |
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| 141 | """ |
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| 142 | A processor is a tool that implements the uniform OCR-D |
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| 143 | `command-line interface for run-time data processing <https://ocr-d.de/en/spec/cli>`_. |
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| 144 | |||
| 145 | That is, it executes a single workflow step, or a combination of workflow steps, |
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| 146 | on the workspace (represented by local METS). It reads input files for all or selected |
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| 147 | physical pages of the input fileGrp(s), computes additional annotation, and writes output |
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| 148 | files for them into the output fileGrp(s). It may take a number of optional or mandatory |
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| 149 | parameters. |
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| 150 | """ |
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| 151 | |||
| 152 | max_instances : int = -1 |
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| 153 | """ |
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| 154 | maximum number of cached instances (ignored if negative), to be applied on top of |
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| 155 | :py:data:`~ocrd_utils.config.OCRD_MAX_PROCESSOR_CACHE` (i.e. whatever is smaller). |
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| 156 | |||
| 157 | (Override this if you know how many instances fit into memory - GPU / CPU RAM - at once.) |
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| 158 | """ |
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| 159 | |||
| 160 | max_workers : int = -1 |
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| 161 | """ |
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| 162 | maximum number of processor forks for page-parallel processing (ignored if negative), |
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| 163 | to be applied on top of :py:data:`~ocrd_utils.config.OCRD_MAX_PARALLEL_PAGES` (i.e. |
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| 164 | whatever is smaller). |
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| 165 | |||
| 166 | (Override this if you know how many pages fit into processing units - GPU shaders / CPU cores |
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| 167 | - at once, or if your class already creates threads prior to forking, e.g. during ``setup``.) |
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| 168 | """ |
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| 169 | |||
| 170 | max_page_seconds : int = -1 |
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| 171 | """ |
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| 172 | maximum number of seconds may be spent processing a single page (ignored if negative), |
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| 173 | to be applied on top of :py:data:`~ocrd_utils.config.OCRD_PROCESSING_PAGE_TIMEOUT` |
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| 174 | (i.e. whatever is smaller). |
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| 175 | |||
| 176 | (Override this if you know how costly this processor may be, irrespective of image size |
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| 177 | or complexity of the page.) |
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| 178 | """ |
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| 179 | |||
| 180 | @property |
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| 181 | def metadata_filename(self) -> str: |
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| 182 | """ |
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| 183 | Relative location of the ``ocrd-tool.json`` file inside the package. |
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| 184 | |||
| 185 | Used by :py:data:`metadata_location`. |
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| 186 | |||
| 187 | (Override if ``ocrd-tool.json`` is not in the root of the module, |
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| 188 | e.g. ``namespace/ocrd-tool.json`` or ``data/ocrd-tool.json``). |
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| 189 | """ |
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| 190 | return 'ocrd-tool.json' |
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| 191 | |||
| 192 | @cached_property |
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| 193 | def metadata_location(self) -> Path: |
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| 194 | """ |
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| 195 | Absolute path of the ``ocrd-tool.json`` file as distributed with the package. |
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| 196 | |||
| 197 | Used by :py:data:`metadata_rawdict`. |
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| 198 | |||
| 199 | (Override if ``ocrd-tool.json`` is not distributed with the Python package.) |
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| 200 | """ |
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| 201 | module = inspect.getmodule(self) |
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| 202 | module_tokens = module.__package__.split('.') |
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| 203 | # for namespace packages, we cannot just use the first token |
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| 204 | for i in range(len(module_tokens)): |
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| 205 | prefix = '.'.join(module_tokens[:i + 1]) |
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| 206 | if sys.modules[prefix].__spec__.has_location: |
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| 207 | return resource_filename(prefix, self.metadata_filename) |
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| 208 | raise Exception("cannot find top-level module prefix for %s", module.__package__) |
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| 209 | |||
| 210 | @cached_property |
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| 211 | def metadata_rawdict(self) -> dict: |
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| 212 | """ |
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| 213 | Raw (unvalidated, unexpanded) ``ocrd-tool.json`` dict contents of the package. |
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| 214 | |||
| 215 | Used by :py:data:`metadata`. |
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| 216 | |||
| 217 | (Override if ``ocrd-tool.json`` is not in a file.) |
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| 218 | """ |
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| 219 | return parse_json_file_with_comments(self.metadata_location) |
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| 220 | |||
| 221 | @cached_property |
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| 222 | def metadata(self) -> dict: |
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| 223 | """ |
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| 224 | The ``ocrd-tool.json`` dict contents of the package, according to the OCR-D |
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| 225 | `spec <https://ocr-d.de/en/spec/ocrd_tool>`_ for processor tools. |
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| 226 | |||
| 227 | After deserialisation, it also gets validated against the |
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| 228 | `schema <https://ocr-d.de/en/spec/ocrd_tool#definition>`_ with all defaults |
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| 229 | expanded. |
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| 230 | |||
| 231 | Used by :py:data:`ocrd_tool` and :py:data:`version`. |
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| 232 | |||
| 233 | (Override if you want to provide metadata programmatically instead of a |
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| 234 | JSON file.) |
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| 235 | """ |
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| 236 | metadata = self.metadata_rawdict |
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| 237 | report = OcrdToolValidator.validate(metadata) |
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| 238 | if not report.is_valid: |
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| 239 | self.logger.error(f"The ocrd-tool.json of this processor is {'problematic' if not report.errors else 'invalid'}:\n" |
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| 240 | f"{report.to_xml()}.\nPlease open an issue at {metadata.get('git_url', 'the website')}.") |
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| 241 | return metadata |
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| 242 | |||
| 243 | @cached_property |
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| 244 | def version(self) -> str: |
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| 245 | """ |
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| 246 | The program version of the package. |
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| 247 | Usually the ``version`` part of :py:data:`metadata`. |
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| 248 | |||
| 249 | (Override if you do not want to use :py:data:`metadata` lookup |
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| 250 | mechanism.) |
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| 251 | """ |
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| 252 | return self.metadata['version'] |
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| 253 | |||
| 254 | @cached_property |
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| 255 | def executable(self) -> str: |
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| 256 | """ |
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| 257 | The executable name of this processor tool. Taken from the runtime |
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| 258 | filename. |
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| 259 | |||
| 260 | Used by :py:data:`ocrd_tool` for lookup in :py:data:`metadata`. |
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| 261 | |||
| 262 | (Override if your entry-point name deviates from the ``executable`` |
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| 263 | name, or the processor gets instantiated from another runtime.) |
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| 264 | """ |
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| 265 | return os.path.basename(inspect.stack()[-1].filename) |
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| 266 | |||
| 267 | @cached_property |
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| 268 | def ocrd_tool(self) -> dict: |
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| 269 | """ |
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| 270 | The ``ocrd-tool.json`` dict contents of this processor tool. |
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| 271 | Usually the :py:data:`executable` key of the ``tools`` part |
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| 272 | of :py:data:`metadata`. |
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| 273 | |||
| 274 | (Override if you do not want to use :py:data:`metadata` lookup |
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| 275 | mechanism.) |
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| 276 | """ |
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| 277 | return self.metadata['tools'][self.executable] |
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| 278 | |||
| 279 | @property |
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| 280 | def parameter(self) -> Optional[dict]: |
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| 281 | """the runtime parameter dict to be used by this processor""" |
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| 282 | if hasattr(self, '_parameter'): |
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| 283 | return self._parameter |
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| 284 | return None |
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| 285 | |||
| 286 | @parameter.setter |
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| 287 | def parameter(self, parameter : dict) -> None: |
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| 288 | if self.parameter is not None: |
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| 289 | self.shutdown() |
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| 290 | parameterValidator = ParameterValidator(self.ocrd_tool) |
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| 291 | report = parameterValidator.validate(parameter) |
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| 292 | if not report.is_valid: |
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| 293 | raise ValueError(f'Invalid parameters:\n{report.to_xml()}') |
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| 294 | # make parameter dict read-only |
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| 295 | self._parameter = frozendict(parameter) |
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| 296 | # (re-)run setup to load models etc |
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| 297 | self.setup() |
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| 298 | |||
| 299 | def __init__( |
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| 300 | self, |
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| 301 | # FIXME: remove in favor of process_workspace(workspace) |
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| 302 | workspace : Optional[Workspace], |
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| 303 | ocrd_tool=None, |
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| 304 | parameter=None, |
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| 305 | input_file_grp=None, |
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| 306 | output_file_grp=None, |
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| 307 | page_id=None, |
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| 308 | download_files=config.OCRD_DOWNLOAD_INPUT, |
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| 309 | version=None |
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| 310 | ): |
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| 311 | """ |
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| 312 | Instantiate, but do not setup (neither for processing nor other usage). |
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| 313 | If given, do parse and validate :py:data:`.parameter`. |
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| 314 | |||
| 315 | Args: |
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| 316 | workspace (:py:class:`~ocrd.Workspace`): The workspace to process. \ |
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| 317 | If not ``None``, then `chdir` to that directory. |
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| 318 | Deprecated since version 3.0: Should be ``None`` here, but then needs to be set \ |
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| 319 | before processing. |
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| 320 | Keyword Args: |
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| 321 | parameter (string): JSON of the runtime choices for ocrd-tool ``parameters``. \ |
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| 322 | Can be ``None`` even for processing, but then needs to be set before running. |
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| 323 | input_file_grp (string): comma-separated list of METS ``fileGrp`` used for input. \ |
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| 324 | Deprecated since version 3.0: Should be ``None`` here, but then needs to be set \ |
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| 325 | before processing. |
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| 326 | output_file_grp (string): comma-separated list of METS ``fileGrp`` used for output. \ |
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| 327 | Deprecated since version 3.0: Should be ``None`` here, but then needs to be set \ |
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| 328 | before processing. |
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| 329 | page_id (string): comma-separated list of METS physical ``page`` IDs to process \ |
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| 330 | (or empty for all pages). \ |
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| 331 | Deprecated since version 3.0: Should be ``None`` here, but then needs to be set \ |
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| 332 | before processing. |
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| 333 | download_files (boolean): Whether input files will be downloaded prior to processing, \ |
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| 334 | defaults to :py:attr:`ocrd_utils.config.OCRD_DOWNLOAD_INPUT` which is ``True`` by default |
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| 335 | """ |
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| 336 | if ocrd_tool is not None: |
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| 337 | deprecation_warning("Passing 'ocrd_tool' as keyword argument to Processor is deprecated - " |
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| 338 | "use or override metadata/executable/ocrd-tool properties instead") |
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| 339 | self.ocrd_tool = ocrd_tool |
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| 340 | self.executable = ocrd_tool['executable'] |
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| 341 | if version is not None: |
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| 342 | deprecation_warning("Passing 'version' as keyword argument to Processor is deprecated - " |
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| 343 | "use or override metadata/version properties instead") |
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| 344 | self.version = version |
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| 345 | if workspace is not None: |
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| 346 | deprecation_warning("Passing a workspace argument other than 'None' to Processor " |
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| 347 | "is deprecated - pass as argument to process_workspace instead") |
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| 348 | self.workspace = workspace |
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| 349 | self.old_pwd = getcwd() |
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| 350 | os.chdir(self.workspace.directory) |
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| 351 | if input_file_grp is not None: |
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| 352 | deprecation_warning("Passing an input_file_grp kwarg other than 'None' to Processor " |
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| 353 | "is deprecated - pass as argument to process_workspace instead") |
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| 354 | self.input_file_grp = input_file_grp |
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| 355 | if output_file_grp is not None: |
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| 356 | deprecation_warning("Passing an output_file_grp kwarg other than 'None' to Processor " |
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| 357 | "is deprecated - pass as argument to process_workspace instead") |
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| 358 | self.output_file_grp = output_file_grp |
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| 359 | if page_id is not None: |
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| 360 | deprecation_warning("Passing a page_id kwarg other than 'None' to Processor " |
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| 361 | "is deprecated - pass as argument to process_workspace instead") |
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| 362 | self.page_id = page_id or None |
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| 363 | self.download = download_files |
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| 364 | #: The logger to be used by processor implementations. |
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| 365 | # `ocrd.processor.base` internals should use :py:attr:`self._base_logger` |
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| 366 | self.logger = getLogger(f'ocrd.processor.{self.__class__.__name__}') |
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| 367 | self._base_logger = getLogger('ocrd.processor.base') |
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| 368 | if parameter is not None: |
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| 369 | self.parameter = parameter |
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| 370 | # workaround for deprecated#72 (@deprecated decorator does not work for subclasses): |
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| 371 | setattr(self, 'process', |
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| 372 | deprecated(version='3.0', reason='process() should be replaced with process_page_pcgts() or process_page_file() or process_workspace()')(getattr(self, 'process'))) |
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| 373 | |||
| 374 | def __del__(self): |
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| 375 | self._base_logger.debug("shutting down") |
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| 376 | self.shutdown() |
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| 377 | |||
| 378 | def show_help(self, subcommand=None): |
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| 379 | """ |
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| 380 | Print a usage description including the standard CLI and all of this processor's ocrd-tool |
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| 381 | parameters and docstrings. |
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| 382 | """ |
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| 383 | print(generate_processor_help(self.ocrd_tool, processor_instance=self, subcommand=subcommand)) |
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| 384 | |||
| 385 | def show_version(self): |
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| 386 | """ |
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| 387 | Print information on this processor's version and OCR-D version. |
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| 388 | """ |
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| 389 | print("Version %s, ocrd/core %s" % (self.version, OCRD_VERSION)) |
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| 390 | |||
| 391 | def verify(self): |
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| 392 | """ |
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| 393 | Verify that :py:attr:`input_file_grp` and :py:attr:`output_file_grp` fulfill the processor's requirements. |
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| 394 | """ |
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| 395 | # verify input and output file groups in parameters |
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| 396 | assert self.input_file_grp is not None |
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| 397 | assert self.output_file_grp is not None |
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| 398 | input_file_grps = self.input_file_grp.split(',') |
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| 399 | output_file_grps = self.output_file_grp.split(',') |
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| 400 | def assert_file_grp_cardinality(grps : List[str], spec : Union[int, List[int]], msg): |
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| 401 | if isinstance(spec, int): |
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| 402 | if spec > 0: |
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| 403 | assert len(grps) == spec, msg % (len(grps), str(spec)) |
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| 404 | else: |
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| 405 | assert isinstance(spec, list) |
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| 406 | minimum = spec[0] |
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| 407 | maximum = spec[1] |
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| 408 | if minimum > 0: |
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| 409 | assert len(grps) >= minimum, msg % (len(grps), str(spec)) |
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| 410 | if maximum > 0: |
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| 411 | assert len(grps) <= maximum, msg % (len(grps), str(spec)) |
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| 412 | # FIXME: enforce unconditionally as soon as grace period for deprecation is over |
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| 413 | if 'input_file_grp_cardinality' in self.ocrd_tool: |
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| 414 | assert_file_grp_cardinality(input_file_grps, self.ocrd_tool['input_file_grp_cardinality'], |
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| 415 | "Unexpected number of input file groups %d vs %s") |
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| 416 | if 'output_file_grp_cardinality' in self.ocrd_tool: |
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| 417 | assert_file_grp_cardinality(output_file_grps, self.ocrd_tool['output_file_grp_cardinality'], |
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| 418 | "Unexpected number of output file groups %d vs %s") |
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| 419 | # verify input and output file groups in METS |
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| 420 | for input_file_grp in input_file_grps: |
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| 421 | assert input_file_grp in self.workspace.mets.file_groups, \ |
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| 422 | f"input fileGrp {input_file_grp} does not exist in workspace {self.workspace}" |
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| 423 | for output_file_grp in output_file_grps: |
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| 424 | assert output_file_grp not in self.workspace.mets.file_groups \ |
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| 425 | or config.OCRD_EXISTING_OUTPUT in ['OVERWRITE', 'SKIP'] \ |
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| 426 | or not any(self.workspace.mets.find_files( |
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| 427 | pageId=self.page_id, fileGrp=output_file_grp)), \ |
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| 428 | f"output fileGrp {output_file_grp} already exists in workspace {self.workspace}" |
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| 429 | # keep this for backwards compatibility: |
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| 430 | return True |
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| 431 | |||
| 432 | def dump_json(self): |
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| 433 | """ |
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| 434 | Print :py:attr:`ocrd_tool` on stdout. |
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| 435 | """ |
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| 436 | print(json.dumps(self.ocrd_tool, indent=True)) |
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| 437 | |||
| 438 | def dump_module_dir(self): |
||
| 439 | """ |
||
| 440 | Print :py:attr:`moduledir` on stdout. |
||
| 441 | """ |
||
| 442 | print(self.moduledir) |
||
| 443 | |||
| 444 | def list_resources(self): |
||
| 445 | """ |
||
| 446 | Find all installed resource files in the search paths and print their path names. |
||
| 447 | """ |
||
| 448 | for res in self.list_all_resources(): |
||
| 449 | print(res) |
||
| 450 | |||
| 451 | def setup(self) -> None: |
||
| 452 | """ |
||
| 453 | Prepare the processor for actual data processing, |
||
| 454 | prior to changing to the workspace directory but |
||
| 455 | after parsing parameters. |
||
| 456 | |||
| 457 | (Override this to load models into memory etc.) |
||
| 458 | """ |
||
| 459 | pass |
||
| 460 | |||
| 461 | def shutdown(self) -> None: |
||
| 462 | """ |
||
| 463 | Bring down the processor after data processing, |
||
| 464 | after to changing back from the workspace directory but |
||
| 465 | before exiting (or setting up with different parameters). |
||
| 466 | |||
| 467 | (Override this to unload models from memory etc.) |
||
| 468 | """ |
||
| 469 | pass |
||
| 470 | |||
| 471 | @deprecated(version='3.0', reason='process() should be replaced with process_page_pcgts() or process_page_file() or process_workspace()') |
||
| 472 | def process(self) -> None: |
||
| 473 | """ |
||
| 474 | Process all files of the :py:data:`workspace` |
||
| 475 | from the given :py:data:`input_file_grp` |
||
| 476 | to the given :py:data:`output_file_grp` |
||
| 477 | for the given :py:data:`page_id` (or all pages) |
||
| 478 | under the given :py:data:`parameter`. |
||
| 479 | |||
| 480 | (This contains the main functionality and needs to be |
||
| 481 | overridden by subclasses.) |
||
| 482 | """ |
||
| 483 | raise NotImplementedError() |
||
| 484 | |||
| 485 | def process_workspace(self, workspace: Workspace) -> None: |
||
| 486 | """ |
||
| 487 | Process all files of the given ``workspace``, |
||
| 488 | from the given :py:data:`input_file_grp` |
||
| 489 | to the given :py:data:`output_file_grp` |
||
| 490 | for the given :py:data:`page_id` (or all pages) |
||
| 491 | under the given :py:data:`parameter`. |
||
| 492 | |||
| 493 | Delegates to :py:meth:`.process_workspace_submit_tasks` |
||
| 494 | and :py:meth:`.process_workspace_handle_tasks`. |
||
| 495 | |||
| 496 | (This will iterate over pages and files, calling |
||
| 497 | :py:meth:`.process_page_file` and handling exceptions. |
||
| 498 | It should be overridden by subclasses to handle cases |
||
| 499 | like post-processing or computation across pages.) |
||
| 500 | """ |
||
| 501 | with pushd_popd(workspace.directory): |
||
| 502 | self.workspace = workspace |
||
| 503 | self.verify() |
||
| 504 | try: |
||
| 505 | # set up multitasking |
||
| 506 | max_workers = max(0, config.OCRD_MAX_PARALLEL_PAGES) |
||
| 507 | if self.max_workers > 0 and self.max_workers < config.OCRD_MAX_PARALLEL_PAGES: |
||
| 508 | self._base_logger.info("limiting number of threads from %d to %d", max_workers, self.max_workers) |
||
| 509 | max_workers = self.max_workers |
||
| 510 | if max_workers > 1: |
||
| 511 | assert isinstance(workspace.mets, ClientSideOcrdMets), \ |
||
| 512 | "OCRD_MAX_PARALLEL_PAGES>1 requires also using --mets-server-url" |
||
| 513 | max_seconds = max(0, config.OCRD_PROCESSING_PAGE_TIMEOUT) |
||
| 514 | if self.max_page_seconds > 0 and self.max_page_seconds < config.OCRD_PROCESSING_PAGE_TIMEOUT: |
||
| 515 | self._base_logger.info("limiting page timeout from %d to %d sec", max_seconds, self.max_page_seconds) |
||
| 516 | max_seconds = self.max_page_seconds |
||
| 517 | |||
| 518 | if max_workers > 1: |
||
| 519 | executor_cls = ProcessPoolExecutor |
||
| 520 | log_queue = mp.Queue() |
||
| 521 | # forward messages from log queue (in subprocesses) to all root handlers |
||
| 522 | log_listener = logging.handlers.QueueListener(log_queue, *logging.root.handlers, respect_handler_level=True) |
||
| 523 | else: |
||
| 524 | executor_cls = DummyExecutor |
||
| 525 | log_queue = None |
||
| 526 | log_listener = None |
||
| 527 | executor = executor_cls( |
||
| 528 | max_workers=max_workers or 1, |
||
| 529 | # only forking method avoids pickling |
||
| 530 | context=mp.get_context('fork'), |
||
| 531 | # share processor instance as global to avoid pickling |
||
| 532 | initializer=_page_worker_set_ctxt, |
||
| 533 | initargs=(self, log_queue), |
||
| 534 | ) |
||
| 535 | if max_workers > 1: |
||
| 536 | log_listener.start() |
||
| 537 | try: |
||
| 538 | self._base_logger.debug("started executor %s with %d workers", str(executor), max_workers or 1) |
||
| 539 | tasks = self.process_workspace_submit_tasks(executor, max_seconds) |
||
| 540 | stats = self.process_workspace_handle_tasks(tasks) |
||
| 541 | finally: |
||
| 542 | executor.shutdown(kill_workers=True, wait=False) |
||
| 543 | if max_workers > 1: |
||
| 544 | log_listener.stop() |
||
| 545 | |||
| 546 | except NotImplementedError: |
||
| 547 | # fall back to deprecated method |
||
| 548 | try: |
||
| 549 | self.process() |
||
| 550 | except Exception as err: |
||
| 551 | # suppress the NotImplementedError context |
||
| 552 | raise err from None |
||
| 553 | |||
| 554 | def process_workspace_submit_tasks(self, executor : TExecutor, max_seconds : int) -> Dict[TFuture, Tuple[str, List[Optional[OcrdFileType]]]]: |
||
| 555 | """ |
||
| 556 | Look up all input files of the given ``workspace`` |
||
| 557 | from the given :py:data:`input_file_grp` |
||
| 558 | for the given :py:data:`page_id` (or all pages), |
||
| 559 | and schedules calling :py:meth:`.process_page_file` |
||
| 560 | on them for each page via `executor` (enforcing |
||
| 561 | a per-page time limit of `max_seconds`). |
||
| 562 | |||
| 563 | When running with `OCRD_MAX_PARALLEL_PAGES>1` and |
||
| 564 | the workspace via METS Server, the executor will fork |
||
| 565 | this many worker parallel subprocesses each processing |
||
| 566 | one page at a time. (Interprocess communication is |
||
| 567 | done via task and result queues.) |
||
| 568 | |||
| 569 | Otherwise, tasks are run sequentially in the |
||
| 570 | current process. |
||
| 571 | |||
| 572 | Delegates to :py:meth:`.zip_input_files` to get |
||
| 573 | the input files for each page, and then calls |
||
| 574 | :py:meth:`.process_workspace_submit_page_task`. |
||
| 575 | |||
| 576 | Returns a dict mapping the per-page tasks |
||
| 577 | (i.e. futures submitted to the executor) |
||
| 578 | to their corresponding pageId and input files. |
||
| 579 | """ |
||
| 580 | tasks = {} |
||
| 581 | for input_file_tuple in self.zip_input_files(on_error='abort', require_first=False): |
||
| 582 | task, page_id, input_files = self.process_workspace_submit_page_task(executor, max_seconds, input_file_tuple) |
||
| 583 | tasks[task] = (page_id, input_files) |
||
| 584 | self._base_logger.debug("submitted %d processing tasks", len(tasks)) |
||
| 585 | return tasks |
||
| 586 | |||
| 587 | def process_workspace_submit_page_task(self, executor : TExecutor, max_seconds : int, input_file_tuple : List[Optional[OcrdFileType]]) -> Tuple[TFuture, str, List[Optional[OcrdFileType]]]: |
||
| 588 | """ |
||
| 589 | Ensure all input files for a single page are |
||
| 590 | downloaded to the workspace, then schedule |
||
| 591 | :py:meth:`.process_process_file` to be run on |
||
| 592 | them via `executor` (enforcing a per-page time |
||
| 593 | limit of `max_seconds`). |
||
| 594 | |||
| 595 | Delegates to :py:meth:`.process_page_file` |
||
| 596 | (wrapped in :py:func:`_page_worker` to share |
||
| 597 | the processor instance across forked processes). |
||
| 598 | |||
| 599 | \b |
||
| 600 | Returns a tuple of: |
||
| 601 | - the scheduled future object, |
||
| 602 | - the corresponding pageId, |
||
| 603 | - the corresponding input files. |
||
| 604 | """ |
||
| 605 | input_files : List[Optional[OcrdFileType]] = [None] * len(input_file_tuple) |
||
| 606 | page_id = next(input_file.pageId |
||
| 607 | for input_file in input_file_tuple |
||
| 608 | if input_file) |
||
| 609 | self._base_logger.info(f"preparing page {page_id}") |
||
| 610 | for i, input_file in enumerate(input_file_tuple): |
||
| 611 | if input_file is None: |
||
| 612 | # file/page not found in this file grp |
||
| 613 | continue |
||
| 614 | input_files[i] = input_file |
||
| 615 | if not self.download: |
||
| 616 | continue |
||
| 617 | try: |
||
| 618 | input_files[i] = self.workspace.download_file(input_file) |
||
| 619 | except (ValueError, FileNotFoundError, HTTPError) as e: |
||
| 620 | self._base_logger.error(repr(e)) |
||
| 621 | self._base_logger.warning(f"failed downloading file {input_file} for page {page_id}") |
||
| 622 | # process page |
||
| 623 | #executor.submit(self.process_page_file, *input_files) |
||
| 624 | return executor.submit(_page_worker, max_seconds, *input_files), page_id, input_files |
||
| 625 | |||
| 626 | def process_workspace_handle_tasks(self, tasks : Dict[TFuture, Tuple[str, List[Optional[OcrdFileType]]]]) -> Tuple[int, int, Dict[str, int], int]: |
||
| 627 | """ |
||
| 628 | Look up scheduled per-page futures one by one, |
||
| 629 | handle errors (exceptions) and gather results. |
||
| 630 | |||
| 631 | \b |
||
| 632 | Enforces policies configured by the following |
||
| 633 | environment variables: |
||
| 634 | - `OCRD_EXISTING_OUTPUT` (abort/skip/overwrite) |
||
| 635 | - `OCRD_MISSING_OUTPUT` (abort/skip/fallback-copy) |
||
| 636 | - `OCRD_MAX_MISSING_OUTPUTS` (abort after all). |
||
| 637 | |||
| 638 | \b |
||
| 639 | Returns a tuple of: |
||
| 640 | - the number of successfully processed pages |
||
| 641 | - the number of failed (i.e. skipped or copied) pages |
||
| 642 | - a dict of the type and corresponding number of exceptions seen |
||
| 643 | - the number of total requested pages (i.e. success+fail+existing). |
||
| 644 | |||
| 645 | Delegates to :py:meth:`.process_workspace_handle_page_task` |
||
| 646 | for each page. |
||
| 647 | """ |
||
| 648 | # aggregate info for logging: |
||
| 649 | nr_succeeded = 0 |
||
| 650 | nr_failed = 0 |
||
| 651 | nr_errors = defaultdict(int) # count causes |
||
| 652 | if config.OCRD_MISSING_OUTPUT == 'SKIP': |
||
| 653 | reason = "skipped" |
||
| 654 | elif config.OCRD_MISSING_OUTPUT == 'COPY': |
||
| 655 | reason = "fallback-copied" |
||
| 656 | for task in tasks: |
||
| 657 | # wait for results, handle errors |
||
| 658 | page_id, input_files = tasks[task] |
||
| 659 | result = self.process_workspace_handle_page_task(page_id, input_files, task) |
||
| 660 | if isinstance(result, Exception): |
||
| 661 | nr_errors[result.__class__.__name__] += 1 |
||
| 662 | nr_failed += 1 |
||
| 663 | # FIXME: this is just prospective, because len(tasks)==nr_failed+nr_succeeded is not guaranteed |
||
| 664 | if config.OCRD_MAX_MISSING_OUTPUTS > 0 and nr_failed / len(tasks) > config.OCRD_MAX_MISSING_OUTPUTS: |
||
| 665 | # already irredeemably many failures, stop short |
||
| 666 | nr_errors = dict(nr_errors) |
||
| 667 | raise Exception(f"too many failures with {reason} output ({nr_failed} of {nr_failed+nr_succeeded}, {str(nr_errors)})") |
||
| 668 | elif result: |
||
| 669 | nr_succeeded += 1 |
||
| 670 | # else skipped - already exists |
||
| 671 | nr_errors = dict(nr_errors) |
||
| 672 | if nr_failed > 0: |
||
| 673 | nr_all = nr_succeeded + nr_failed |
||
| 674 | if config.OCRD_MAX_MISSING_OUTPUTS > 0 and nr_failed / nr_all > config.OCRD_MAX_MISSING_OUTPUTS: |
||
| 675 | raise Exception(f"too many failures with {reason} output ({nr_failed} of {nr_all}, {str(nr_errors)})") |
||
| 676 | self._base_logger.warning("%s %d of %d pages due to %s", reason, nr_failed, nr_all, str(nr_errors)) |
||
|
|
|||
| 677 | return nr_succeeded, nr_failed, nr_errors, len(tasks) |
||
| 678 | |||
| 679 | def process_workspace_handle_page_task(self, page_id : str, input_files : List[Optional[OcrdFileType]], task : TFuture) -> Union[bool, Exception]: |
||
| 680 | """ |
||
| 681 | \b |
||
| 682 | Await a single page result and handle errors (exceptions), |
||
| 683 | enforcing policies configured by the following |
||
| 684 | environment variables: |
||
| 685 | - `OCRD_EXISTING_OUTPUT` (abort/skip/overwrite) |
||
| 686 | - `OCRD_MISSING_OUTPUT` (abort/skip/fallback-copy) |
||
| 687 | - `OCRD_MAX_MISSING_OUTPUTS` (abort after all). |
||
| 688 | |||
| 689 | \b |
||
| 690 | Returns |
||
| 691 | - true in case of success |
||
| 692 | - false in case the output already exists |
||
| 693 | - the exception in case of failure |
||
| 694 | """ |
||
| 695 | # FIXME: differentiate error cases in various ways: |
||
| 696 | # - ResourceNotFoundError → use ResourceManager to download (once), then retry |
||
| 697 | # - transient (I/O or OOM) error → maybe sleep, retry |
||
| 698 | # - persistent (data) error → skip / dummy / raise |
||
| 699 | try: |
||
| 700 | self._base_logger.debug("waiting for output of task %s (page %s)", task, page_id) |
||
| 701 | # timeout kwarg on future is useless: it only raises TimeoutError here, |
||
| 702 | # but does not stop the running process/thread, and executor itself |
||
| 703 | # offers nothing to that effect: |
||
| 704 | # task.result(timeout=max_seconds or None) |
||
| 705 | # so we instead applied the timeout within the worker function |
||
| 706 | task.result() |
||
| 707 | return True |
||
| 708 | except NotImplementedError: |
||
| 709 | # exclude NotImplementedError, so we can try process() below |
||
| 710 | raise |
||
| 711 | # handle input failures separately |
||
| 712 | except FileExistsError as err: |
||
| 713 | if config.OCRD_EXISTING_OUTPUT == 'ABORT': |
||
| 714 | raise err |
||
| 715 | if config.OCRD_EXISTING_OUTPUT == 'SKIP': |
||
| 716 | return False |
||
| 717 | if config.OCRD_EXISTING_OUTPUT == 'OVERWRITE': |
||
| 718 | # too late here, must not happen |
||
| 719 | raise Exception(f"got {err} despite OCRD_EXISTING_OUTPUT==OVERWRITE") |
||
| 720 | except KeyboardInterrupt: |
||
| 721 | raise |
||
| 722 | # broad coverage of output failures (including TimeoutError) |
||
| 723 | except Exception as err: |
||
| 724 | # FIXME: add re-usable/actionable logging |
||
| 725 | if config.OCRD_MISSING_OUTPUT == 'ABORT': |
||
| 726 | self._base_logger.error(f"Failure on page {page_id}: {str(err) or err.__class__.__name__}") |
||
| 727 | raise err |
||
| 728 | self._base_logger.exception(f"Failure on page {page_id}: {str(err) or err.__class__.__name__}") |
||
| 729 | if config.OCRD_MISSING_OUTPUT == 'SKIP': |
||
| 730 | pass |
||
| 731 | elif config.OCRD_MISSING_OUTPUT == 'COPY': |
||
| 732 | self._copy_page_file(input_files[0]) |
||
| 733 | else: |
||
| 734 | desc = config.describe('OCRD_MISSING_OUTPUT', wrap_text=False, indent_text=False) |
||
| 735 | raise ValueError(f"unknown configuration value {config.OCRD_MISSING_OUTPUT} - {desc}") |
||
| 736 | return err |
||
| 737 | |||
| 738 | def _copy_page_file(self, input_file : OcrdFileType) -> None: |
||
| 739 | """ |
||
| 740 | Copy the given ``input_file`` of the :py:data:`workspace`, |
||
| 741 | representing one physical page (passed as one opened |
||
| 742 | :py:class:`~ocrd_models.OcrdFile` per input fileGrp) |
||
| 743 | and add it as if it was a processing result. |
||
| 744 | """ |
||
| 745 | input_pcgts : OcrdPage |
||
| 746 | assert isinstance(input_file, get_args(OcrdFileType)) |
||
| 747 | self._base_logger.debug(f"parsing file {input_file.ID} for page {input_file.pageId}") |
||
| 748 | try: |
||
| 749 | input_pcgts = page_from_file(input_file) |
||
| 750 | except ValueError as err: |
||
| 751 | # not PAGE and not an image to generate PAGE for |
||
| 752 | self._base_logger.error(f"non-PAGE input for page {input_file.pageId}: {err}") |
||
| 753 | return |
||
| 754 | output_file_id = make_file_id(input_file, self.output_file_grp) |
||
| 755 | input_pcgts.set_pcGtsId(output_file_id) |
||
| 756 | self.add_metadata(input_pcgts) |
||
| 757 | self.workspace.add_file( |
||
| 758 | file_id=output_file_id, |
||
| 759 | file_grp=self.output_file_grp, |
||
| 760 | page_id=input_file.pageId, |
||
| 761 | local_filename=os.path.join(self.output_file_grp, output_file_id + '.xml'), |
||
| 762 | mimetype=MIMETYPE_PAGE, |
||
| 763 | content=to_xml(input_pcgts), |
||
| 764 | ) |
||
| 765 | |||
| 766 | def process_page_file(self, *input_files : Optional[OcrdFileType]) -> None: |
||
| 767 | """ |
||
| 768 | Process the given ``input_files`` of the :py:data:`workspace`, |
||
| 769 | representing one physical page (passed as one opened |
||
| 770 | :py:class:`.OcrdFile` per input fileGrp) |
||
| 771 | under the given :py:data:`.parameter`, and make sure the |
||
| 772 | results get added accordingly. |
||
| 773 | |||
| 774 | (This uses :py:meth:`.process_page_pcgts`, but should be overridden by subclasses |
||
| 775 | to handle cases like multiple output fileGrps, non-PAGE input etc.) |
||
| 776 | """ |
||
| 777 | input_pcgts : List[Optional[OcrdPage]] = [None] * len(input_files) |
||
| 778 | assert isinstance(input_files[0], get_args(OcrdFileType)) |
||
| 779 | page_id = input_files[0].pageId |
||
| 780 | self._base_logger.info("processing page %s", page_id) |
||
| 781 | for i, input_file in enumerate(input_files): |
||
| 782 | assert isinstance(input_file, get_args(OcrdFileType)) |
||
| 783 | self._base_logger.debug(f"parsing file {input_file.ID} for page {page_id}") |
||
| 784 | try: |
||
| 785 | page_ = page_from_file(input_file) |
||
| 786 | assert isinstance(page_, OcrdPage) |
||
| 787 | input_pcgts[i] = page_ |
||
| 788 | except ValueError as err: |
||
| 789 | # not PAGE and not an image to generate PAGE for |
||
| 790 | self._base_logger.error(f"non-PAGE input for page {page_id}: {err}") |
||
| 791 | output_file_id = make_file_id(input_files[0], self.output_file_grp) |
||
| 792 | output_file = next(self.workspace.mets.find_files(ID=output_file_id), None) |
||
| 793 | if output_file and config.OCRD_EXISTING_OUTPUT != 'OVERWRITE': |
||
| 794 | # short-cut avoiding useless computation: |
||
| 795 | raise FileExistsError( |
||
| 796 | f"A file with ID=={output_file_id} already exists {output_file} and neither force nor ignore are set" |
||
| 797 | ) |
||
| 798 | result = self.process_page_pcgts(*input_pcgts, page_id=page_id) |
||
| 799 | for image_result in result.images: |
||
| 800 | image_file_id = f'{output_file_id}_{image_result.file_id_suffix}' |
||
| 801 | image_file_path = join(self.output_file_grp, f'{image_file_id}.png') |
||
| 802 | if isinstance(image_result.alternative_image, PageType): |
||
| 803 | # special case: not an alternative image, but replacing the original image |
||
| 804 | # (this is needed by certain processors when the original's coordinate system |
||
| 805 | # cannot or must not be kept) |
||
| 806 | image_result.alternative_image.set_imageFilename(image_file_path) |
||
| 807 | image_result.alternative_image.set_imageWidth(image_result.pil.width) |
||
| 808 | image_result.alternative_image.set_imageHeight(image_result.pil.height) |
||
| 809 | elif isinstance(image_result.alternative_image, AlternativeImageType): |
||
| 810 | image_result.alternative_image.set_filename(image_file_path) |
||
| 811 | elif image_result.alternative_image is None: |
||
| 812 | pass # do not reference in PAGE result |
||
| 813 | else: |
||
| 814 | raise ValueError(f"process_page_pcgts returned an OcrdPageResultImage of unknown type " |
||
| 815 | f"{type(image_result.alternative_image)}") |
||
| 816 | self.workspace.save_image_file( |
||
| 817 | image_result.pil, |
||
| 818 | image_file_id, |
||
| 819 | self.output_file_grp, |
||
| 820 | page_id=page_id, |
||
| 821 | file_path=image_file_path, |
||
| 822 | ) |
||
| 823 | result.pcgts.set_pcGtsId(output_file_id) |
||
| 824 | self.add_metadata(result.pcgts) |
||
| 825 | self.workspace.add_file( |
||
| 826 | file_id=output_file_id, |
||
| 827 | file_grp=self.output_file_grp, |
||
| 828 | page_id=page_id, |
||
| 829 | local_filename=os.path.join(self.output_file_grp, output_file_id + '.xml'), |
||
| 830 | mimetype=MIMETYPE_PAGE, |
||
| 831 | content=to_xml(result.pcgts), |
||
| 832 | ) |
||
| 833 | |||
| 834 | def process_page_pcgts(self, *input_pcgts : Optional[OcrdPage], page_id : Optional[str] = None) -> OcrdPageResult: |
||
| 835 | """ |
||
| 836 | Process the given ``input_pcgts`` of the :py:data:`.workspace`, |
||
| 837 | representing one physical page (passed as one parsed |
||
| 838 | :py:class:`.OcrdPage` per input fileGrp) |
||
| 839 | under the given :py:data:`.parameter`, and return the |
||
| 840 | resulting :py:class:`.OcrdPageResult`. |
||
| 841 | |||
| 842 | Optionally, add to the ``images`` attribute of the resulting |
||
| 843 | :py:class:`.OcrdPageResult` instances of :py:class:`.OcrdPageResultImage`, |
||
| 844 | which have required fields for ``pil`` (:py:class:`PIL.Image` image data), |
||
| 845 | ``file_id_suffix`` (used for generating IDs of the saved image) and |
||
| 846 | ``alternative_image`` (reference of the :py:class:`ocrd_models.ocrd_page.AlternativeImageType` |
||
| 847 | for setting the filename of the saved image). |
||
| 848 | |||
| 849 | (This contains the main functionality and must be overridden by subclasses, |
||
| 850 | unless it does not get called by some overriden :py:meth:`.process_page_file`.) |
||
| 851 | """ |
||
| 852 | raise NotImplementedError() |
||
| 853 | |||
| 854 | def add_metadata(self, pcgts: OcrdPage) -> None: |
||
| 855 | """ |
||
| 856 | Add PAGE-XML :py:class:`~ocrd_models.ocrd_page.MetadataItemType` ``MetadataItem`` describing |
||
| 857 | the processing step and runtime parameters to :py:class:`.OcrdPage` ``pcgts``. |
||
| 858 | """ |
||
| 859 | metadata_obj = pcgts.get_Metadata() |
||
| 860 | assert metadata_obj is not None |
||
| 861 | metadata_obj.add_MetadataItem( |
||
| 862 | MetadataItemType(type_="processingStep", |
||
| 863 | name=self.ocrd_tool['steps'][0], |
||
| 864 | value=self.ocrd_tool['executable'], |
||
| 865 | Labels=[LabelsType( |
||
| 866 | externalModel="ocrd-tool", |
||
| 867 | externalId="parameters", |
||
| 868 | Label=[LabelType(type_=name, |
||
| 869 | value=self.parameter[name]) |
||
| 870 | for name in self.parameter.keys()]), |
||
| 871 | LabelsType( |
||
| 872 | externalModel="ocrd-tool", |
||
| 873 | externalId="version", |
||
| 874 | Label=[LabelType(type_=self.ocrd_tool['executable'], |
||
| 875 | value=self.version), |
||
| 876 | LabelType(type_='ocrd/core', |
||
| 877 | value=OCRD_VERSION)]) |
||
| 878 | ])) |
||
| 879 | |||
| 880 | def resolve_resource(self, val): |
||
| 881 | """ |
||
| 882 | Resolve a resource name to an absolute file path with the algorithm in |
||
| 883 | `spec <https://ocr-d.de/en/spec/ocrd_tool#file-parameters>`_ |
||
| 884 | |||
| 885 | Args: |
||
| 886 | val (string): resource value to resolve |
||
| 887 | """ |
||
| 888 | executable = self.ocrd_tool['executable'] |
||
| 889 | if exists(val): |
||
| 890 | self._base_logger.debug("Resolved to absolute path %s" % val) |
||
| 891 | return val |
||
| 892 | # FIXME: remove once workspace arg / old_pwd is gone: |
||
| 893 | if hasattr(self, 'old_pwd'): |
||
| 894 | cwd = self.old_pwd |
||
| 895 | else: |
||
| 896 | cwd = getcwd() |
||
| 897 | ret = [cand for cand in list_resource_candidates(executable, val, |
||
| 898 | cwd=cwd, moduled=self.moduledir) |
||
| 899 | if exists(cand)] |
||
| 900 | if ret: |
||
| 901 | self._base_logger.debug("Resolved %s to absolute path %s" % (val, ret[0])) |
||
| 902 | return ret[0] |
||
| 903 | raise ResourceNotFoundError(val, executable) |
||
| 904 | |||
| 905 | def show_resource(self, val): |
||
| 906 | """ |
||
| 907 | Resolve a resource name to a file path with the algorithm in |
||
| 908 | `spec <https://ocr-d.de/en/spec/ocrd_tool#file-parameters>`_, |
||
| 909 | then print its contents to stdout. |
||
| 910 | |||
| 911 | Args: |
||
| 912 | val (string): resource value to show |
||
| 913 | """ |
||
| 914 | res_fname = self.resolve_resource(val) |
||
| 915 | fpath = Path(res_fname) |
||
| 916 | if fpath.is_dir(): |
||
| 917 | with pushd_popd(fpath): |
||
| 918 | fileobj = io.BytesIO() |
||
| 919 | with tarfile.open(fileobj=fileobj, mode='w:gz') as tarball: |
||
| 920 | tarball.add('.') |
||
| 921 | fileobj.seek(0) |
||
| 922 | copyfileobj(fileobj, sys.stdout.buffer) |
||
| 923 | else: |
||
| 924 | sys.stdout.buffer.write(fpath.read_bytes()) |
||
| 925 | |||
| 926 | def list_all_resources(self): |
||
| 927 | """ |
||
| 928 | List all resources found in the filesystem and matching content-type by filename suffix |
||
| 929 | """ |
||
| 930 | mimetypes = get_processor_resource_types(None, self.ocrd_tool) |
||
| 931 | for res in list_all_resources(self.ocrd_tool['executable'], moduled=self.moduledir): |
||
| 932 | res = Path(res) |
||
| 933 | if not '*/*' in mimetypes: |
||
| 934 | if res.is_dir() and not 'text/directory' in mimetypes: |
||
| 935 | continue |
||
| 936 | # if we do not know all MIME types, then keep the file, otherwise require suffix match |
||
| 937 | if res.is_file() and not any(res.suffix == MIME_TO_EXT.get(mime, res.suffix) |
||
| 938 | for mime in mimetypes): |
||
| 939 | continue |
||
| 940 | yield res |
||
| 941 | |||
| 942 | @property |
||
| 943 | def module(self): |
||
| 944 | """ |
||
| 945 | The top-level module this processor belongs to. |
||
| 946 | """ |
||
| 947 | # find shortest prefix path that is not just a namespace package |
||
| 948 | fqname = '' |
||
| 949 | for name in self.__module__.split('.'): |
||
| 950 | if fqname: |
||
| 951 | fqname += '.' |
||
| 952 | fqname += name |
||
| 953 | if getattr(sys.modules[fqname], '__file__', None): |
||
| 954 | return fqname |
||
| 955 | # fall-back |
||
| 956 | return self.__module__ |
||
| 957 | |||
| 958 | @property |
||
| 959 | def moduledir(self): |
||
| 960 | """ |
||
| 961 | The filesystem path of the module directory. |
||
| 962 | """ |
||
| 963 | return resource_filename(self.module, '.') |
||
| 964 | |||
| 965 | @property |
||
| 966 | def input_files(self): |
||
| 967 | """ |
||
| 968 | List the input files (for single-valued :py:attr:`input_file_grp`). |
||
| 969 | |||
| 970 | For each physical page: |
||
| 971 | |||
| 972 | - If there is a single PAGE-XML for the page, take it (and forget about all |
||
| 973 | other files for that page) |
||
| 974 | - Else if there is a single image file, take it (and forget about all other |
||
| 975 | files for that page) |
||
| 976 | - Otherwise raise an error (complaining that only PAGE-XML warrants |
||
| 977 | having multiple images for a single page) |
||
| 978 | |||
| 979 | See `algorithm <https://github.com/cisocrgroup/ocrd_cis/pull/57#issuecomment-656336593>`_ |
||
| 980 | |||
| 981 | Returns: |
||
| 982 | A list of :py:class:`ocrd_models.ocrd_file.OcrdFile` objects. |
||
| 983 | """ |
||
| 984 | if not self.input_file_grp: |
||
| 985 | raise ValueError("Processor is missing input fileGrp") |
||
| 986 | ret = self.zip_input_files(mimetype=None, on_error='abort') |
||
| 987 | if not ret: |
||
| 988 | return [] |
||
| 989 | assert len(ret[0]) == 1, 'Use zip_input_files() instead of input_files when processing multiple input fileGrps' |
||
| 990 | return [tuples[0] for tuples in ret] |
||
| 991 | |||
| 992 | def zip_input_files(self, require_first=True, mimetype=None, on_error='skip'): |
||
| 993 | """ |
||
| 994 | List tuples of input files (for multi-valued :py:attr:`input_file_grp`). |
||
| 995 | |||
| 996 | Processors that expect/need multiple input file groups, |
||
| 997 | cannot use :py:data:`input_files`. They must align (zip) input files |
||
| 998 | across pages. This includes the case where not all pages |
||
| 999 | are equally present in all file groups. It also requires |
||
| 1000 | making a consistent selection if there are multiple files |
||
| 1001 | per page. |
||
| 1002 | |||
| 1003 | Following the OCR-D functional model, this function tries to |
||
| 1004 | find a single PAGE file per page, or fall back to a single |
||
| 1005 | image file per page. In either case, multiple matches per page |
||
| 1006 | are an error (see error handling below). |
||
| 1007 | This default behaviour can be changed by using a fixed MIME |
||
| 1008 | type filter via :py:attr:`mimetype`. But still, multiple matching |
||
| 1009 | files per page are an error. |
||
| 1010 | |||
| 1011 | Single-page multiple-file errors are handled according to |
||
| 1012 | :py:attr:`on_error`: |
||
| 1013 | |||
| 1014 | - if ``skip``, then the page for the respective fileGrp will be |
||
| 1015 | silently skipped (as if there was no match at all) |
||
| 1016 | - if ``first``, then the first matching file for the page will be |
||
| 1017 | silently selected (as if the first was the only match) |
||
| 1018 | - if ``last``, then the last matching file for the page will be |
||
| 1019 | silently selected (as if the last was the only match) |
||
| 1020 | - if ``abort``, then an exception will be raised. |
||
| 1021 | |||
| 1022 | Multiple matches for PAGE-XML will always raise an exception. |
||
| 1023 | |||
| 1024 | Keyword Args: |
||
| 1025 | require_first (boolean): If true, then skip a page entirely |
||
| 1026 | whenever it is not available in the first input `fileGrp`. |
||
| 1027 | on_error (string): How to handle multiple file matches per page. |
||
| 1028 | mimetype (string): If not `None`, filter by the specified MIME |
||
| 1029 | type (literal or regex prefixed by `//`). Otherwise prefer |
||
| 1030 | PAGE or image. |
||
| 1031 | Returns: |
||
| 1032 | A list of :py:class:`ocrd_models.ocrd_file.OcrdFile` tuples. |
||
| 1033 | """ |
||
| 1034 | if not self.input_file_grp: |
||
| 1035 | raise ValueError("Processor is missing input fileGrp") |
||
| 1036 | |||
| 1037 | ifgs = self.input_file_grp.split(",") |
||
| 1038 | # Iterating over all files repeatedly may seem inefficient at first sight, |
||
| 1039 | # but the unnecessary OcrdFile instantiations for posterior fileGrp filtering |
||
| 1040 | # can actually be much more costly than traversing the ltree. |
||
| 1041 | # This might depend on the number of pages vs number of fileGrps. |
||
| 1042 | |||
| 1043 | pages = {} |
||
| 1044 | for i, ifg in enumerate(ifgs): |
||
| 1045 | files_ = sorted(self.workspace.mets.find_all_files( |
||
| 1046 | pageId=self.page_id, fileGrp=ifg, mimetype=mimetype), |
||
| 1047 | # sort by MIME type so PAGE comes before images |
||
| 1048 | key=lambda file_: file_.mimetype) |
||
| 1049 | for file_ in files_: |
||
| 1050 | if not file_.pageId: |
||
| 1051 | # ignore document-global files |
||
| 1052 | continue |
||
| 1053 | ift = pages.setdefault(file_.pageId, [None]*len(ifgs)) |
||
| 1054 | if ift[i]: |
||
| 1055 | self._base_logger.debug(f"another file {file_.ID} for page {file_.pageId} in input file group {ifg}") |
||
| 1056 | # fileGrp has multiple files for this page ID |
||
| 1057 | if mimetype: |
||
| 1058 | # filter was active, this must not happen |
||
| 1059 | self._base_logger.warning(f"added file {file_.ID} for page {file_.pageId} in input file group {ifg} " |
||
| 1060 | f"conflicts with file {ift[i].ID} of same MIME type {mimetype} - on_error={on_error}") |
||
| 1061 | View Code Duplication | if on_error == 'skip': |
|
| 1062 | ift[i] = None |
||
| 1063 | elif on_error == 'first': |
||
| 1064 | pass # keep first match |
||
| 1065 | elif on_error == 'last': |
||
| 1066 | ift[i] = file_ |
||
| 1067 | elif on_error == 'abort': |
||
| 1068 | raise NonUniqueInputFile(ifg, file_.pageId, mimetype) |
||
| 1069 | else: |
||
| 1070 | raise Exception("Unknown 'on_error' strategy '%s'" % on_error) |
||
| 1071 | elif (ift[i].mimetype == MIMETYPE_PAGE and |
||
| 1072 | file_.mimetype != MIMETYPE_PAGE): |
||
| 1073 | pass # keep PAGE match |
||
| 1074 | elif (ift[i].mimetype == MIMETYPE_PAGE and |
||
| 1075 | file_.mimetype == MIMETYPE_PAGE): |
||
| 1076 | raise NonUniqueInputFile(ifg, file_.pageId, None) |
||
| 1077 | else: |
||
| 1078 | # filter was inactive but no PAGE is in control, this must not happen |
||
| 1079 | self._base_logger.warning(f"added file {file_.ID} for page {file_.pageId} in input file group {ifg} " |
||
| 1080 | f"conflicts with file {ift[i].ID} but no PAGE available - on_error={on_error}") |
||
| 1081 | View Code Duplication | if on_error == 'skip': |
|
| 1082 | ift[i] = None |
||
| 1083 | elif on_error == 'first': |
||
| 1084 | pass # keep first match |
||
| 1085 | elif on_error == 'last': |
||
| 1086 | ift[i] = file_ |
||
| 1087 | elif on_error == 'abort': |
||
| 1088 | raise NonUniqueInputFile(ifg, file_.pageId, None) |
||
| 1089 | else: |
||
| 1090 | raise Exception("Unknown 'on_error' strategy '%s'" % on_error) |
||
| 1091 | else: |
||
| 1092 | self._base_logger.debug(f"adding file {file_.ID} for page {file_.pageId} to input file group {ifg}") |
||
| 1093 | ift[i] = file_ |
||
| 1094 | # Warn if no files found but pageId was specified, because that might be due to invalid page_id (range) |
||
| 1095 | if self.page_id and not any(pages): |
||
| 1096 | self._base_logger.critical(f"Could not find any files for selected pageId {self.page_id}.\n" |
||
| 1097 | f"compare '{self.page_id}' with the output of 'orcd workspace list-page'.") |
||
| 1098 | ifts = [] |
||
| 1099 | for page, ifiles in pages.items(): |
||
| 1100 | for i, ifg in enumerate(ifgs): |
||
| 1101 | if not ifiles[i]: |
||
| 1102 | # could be from non-unique with on_error=skip or from true gap |
||
| 1103 | self._base_logger.error(f'Found no file for page {page} in file group {ifg}') |
||
| 1104 | if config.OCRD_MISSING_INPUT == 'abort': |
||
| 1105 | raise MissingInputFile(ifg, page, mimetype) |
||
| 1106 | if not any(ifiles): |
||
| 1107 | # must be from non-unique with on_error=skip |
||
| 1108 | self._base_logger.warning(f'Found no files for {page} - skipping') |
||
| 1109 | continue |
||
| 1110 | if ifiles[0] or not require_first: |
||
| 1111 | ifts.append(tuple(ifiles)) |
||
| 1112 | return ifts |
||
| 1113 | |||
| 1114 | _page_worker_processor = None |
||
| 1115 | """ |
||
| 1116 | This global binding for the processor is required to avoid |
||
| 1117 | squeezing the processor through a mp.Queue (which is impossible |
||
| 1118 | due to unpicklable attributes like .workspace.mets._tree anyway) |
||
| 1119 | when calling Processor.process_page_file as page worker processes |
||
| 1120 | in Processor.process_workspace. Forking allows inheriting global |
||
| 1121 | objects, and with the METS Server we do not mutate the local |
||
| 1122 | processor instance anyway. |
||
| 1123 | """ |
||
| 1124 | def _page_worker_set_ctxt(processor, log_queue): |
||
| 1125 | """ |
||
| 1126 | Overwrites `ocrd.processor.base._page_worker_processor` instance |
||
| 1127 | for sharing with subprocesses in ProcessPoolExecutor initializer. |
||
| 1128 | """ |
||
| 1129 | global _page_worker_processor |
||
| 1130 | _page_worker_processor = processor |
||
| 1131 | if log_queue: |
||
| 1132 | # replace all log handlers with just one queue handler |
||
| 1133 | logging.root.handlers = [logging.handlers.QueueHandler(log_queue)] |
||
| 1134 | |||
| 1135 | def _page_worker(timeout, *input_files): |
||
| 1136 | """ |
||
| 1137 | Wraps a `Processor.process_page_file` call as payload (call target) |
||
| 1138 | of the ProcessPoolExecutor workers, but also enforces the given timeout. |
||
| 1139 | """ |
||
| 1140 | page_id = next((file.pageId for file in input_files |
||
| 1141 | if hasattr(file, 'pageId')), "") |
||
| 1142 | if timeout > 0: |
||
| 1143 | timer = Timer(timeout, interrupt_main) |
||
| 1144 | timer.start() |
||
| 1145 | try: |
||
| 1146 | _page_worker_processor.process_page_file(*input_files) |
||
| 1147 | _page_worker_processor.logger.debug("page worker completed for page %s", page_id) |
||
| 1148 | except KeyboardInterrupt: |
||
| 1149 | _page_worker_processor.logger.debug("page worker timed out for page %s", page_id) |
||
| 1150 | raise TimeoutError() |
||
| 1151 | finally: |
||
| 1152 | if timeout > 0: |
||
| 1153 | timer.cancel() |
||
| 1154 | |||
| 1155 | def generate_processor_help(ocrd_tool, processor_instance=None, subcommand=None): |
||
| 1156 | """Generate a string describing the full CLI of this processor including params. |
||
| 1157 | |||
| 1158 | Args: |
||
| 1159 | ocrd_tool (dict): this processor's ``tools`` section of the module's ``ocrd-tool.json`` |
||
| 1160 | processor_instance (object, optional): the processor implementation |
||
| 1161 | (for adding any module/class/function docstrings) |
||
| 1162 | subcommand (string): 'worker' or 'server' |
||
| 1163 | """ |
||
| 1164 | doc_help = '' |
||
| 1165 | if processor_instance: |
||
| 1166 | module = inspect.getmodule(processor_instance) |
||
| 1167 | if module and module.__doc__: |
||
| 1168 | doc_help += '\n' + inspect.cleandoc(module.__doc__) + '\n' |
||
| 1169 | if processor_instance.__doc__: |
||
| 1170 | doc_help += '\n' + inspect.cleandoc(processor_instance.__doc__) + '\n' |
||
| 1171 | # Try to find the most concrete docstring among the various methods that an implementation |
||
| 1172 | # could overload, first serving. |
||
| 1173 | # In doing so, compare with Processor to avoid a glitch in the way py>=3.5 inherits docstrings. |
||
| 1174 | # (They are supposed to only repeat information inspect.getdoc, rather than inherit __doc__ itself.) |
||
| 1175 | for method in ['process_page_pcgts', 'process_page_file', 'process_workspace', 'process']: |
||
| 1176 | instance_method = getattr(processor_instance, method) |
||
| 1177 | superclass_method = getattr(Processor, method) |
||
| 1178 | if instance_method.__doc__ and instance_method.__doc__ != superclass_method.__doc__: |
||
| 1179 | doc_help += '\n' + inspect.cleandoc(instance_method.__doc__) + '\n' |
||
| 1180 | break |
||
| 1181 | if doc_help: |
||
| 1182 | doc_help = '\n\n' + wrap_text(doc_help, width=72, |
||
| 1183 | initial_indent=' > ', |
||
| 1184 | subsequent_indent=' > ', |
||
| 1185 | preserve_paragraphs=True) |
||
| 1186 | subcommands = '''\ |
||
| 1187 | worker Start a processing worker rather than do local processing |
||
| 1188 | server Start a processor server rather than do local processing |
||
| 1189 | ''' |
||
| 1190 | |||
| 1191 | processing_worker_options = '''\ |
||
| 1192 | --queue The RabbitMQ server address in format |
||
| 1193 | "amqp://{user}:{pass}@{host}:{port}/{vhost}" |
||
| 1194 | [amqp://admin:admin@localhost:5672] |
||
| 1195 | --database The MongoDB server address in format |
||
| 1196 | "mongodb://{host}:{port}" |
||
| 1197 | [mongodb://localhost:27018] |
||
| 1198 | --log-filename Filename to redirect STDOUT/STDERR to, |
||
| 1199 | if specified. |
||
| 1200 | ''' |
||
| 1201 | |||
| 1202 | processing_server_options = '''\ |
||
| 1203 | --address The Processor server address in format |
||
| 1204 | "{host}:{port}" |
||
| 1205 | --database The MongoDB server address in format |
||
| 1206 | "mongodb://{host}:{port}" |
||
| 1207 | [mongodb://localhost:27018] |
||
| 1208 | ''' |
||
| 1209 | |||
| 1210 | processing_options = '''\ |
||
| 1211 | -m, --mets URL-PATH URL or file path of METS to process [./mets.xml] |
||
| 1212 | -w, --working-dir PATH Working directory of local workspace [dirname(URL-PATH)] |
||
| 1213 | -I, --input-file-grp USE File group(s) used as input |
||
| 1214 | -O, --output-file-grp USE File group(s) used as output |
||
| 1215 | -g, --page-id ID Physical page ID(s) to process instead of full document [] |
||
| 1216 | --overwrite Remove existing output pages/images |
||
| 1217 | (with "--page-id", remove only those). |
||
| 1218 | Short-hand for OCRD_EXISTING_OUTPUT=OVERWRITE |
||
| 1219 | --debug Abort on any errors with full stack trace. |
||
| 1220 | Short-hand for OCRD_MISSING_OUTPUT=ABORT |
||
| 1221 | --profile Enable profiling |
||
| 1222 | --profile-file PROF-PATH Write cProfile stats to PROF-PATH. Implies "--profile" |
||
| 1223 | -p, --parameter JSON-PATH Parameters, either verbatim JSON string |
||
| 1224 | or JSON file path |
||
| 1225 | -P, --param-override KEY VAL Override a single JSON object key-value pair, |
||
| 1226 | taking precedence over --parameter |
||
| 1227 | -U, --mets-server-url URL URL of a METS Server for parallel incremental access to METS |
||
| 1228 | If URL starts with http:// start an HTTP server there, |
||
| 1229 | otherwise URL is a path to an on-demand-created unix socket |
||
| 1230 | -l, --log-level [OFF|ERROR|WARN|INFO|DEBUG|TRACE] |
||
| 1231 | Override log level globally [INFO] |
||
| 1232 | --log-filename LOG-PATH File to redirect stderr logging to (overriding ocrd_logging.conf). |
||
| 1233 | ''' |
||
| 1234 | |||
| 1235 | information_options = '''\ |
||
| 1236 | -C, --show-resource RESNAME Dump the content of processor resource RESNAME |
||
| 1237 | -L, --list-resources List names of processor resources |
||
| 1238 | -J, --dump-json Dump tool description as JSON |
||
| 1239 | -D, --dump-module-dir Show the 'module' resource location path for this processor |
||
| 1240 | -h, --help Show this message |
||
| 1241 | -V, --version Show version |
||
| 1242 | ''' |
||
| 1243 | |||
| 1244 | parameter_help = '' |
||
| 1245 | if 'parameters' not in ocrd_tool or not ocrd_tool['parameters']: |
||
| 1246 | parameter_help = ' NONE\n' |
||
| 1247 | else: |
||
| 1248 | def wrap(s): |
||
| 1249 | return wrap_text(s, initial_indent=' '*3, |
||
| 1250 | subsequent_indent=' '*4, |
||
| 1251 | width=72, preserve_paragraphs=True) |
||
| 1252 | for param_name, param in ocrd_tool['parameters'].items(): |
||
| 1253 | parameter_help += wrap('"%s" [%s%s]' % ( |
||
| 1254 | param_name, |
||
| 1255 | param['type'], |
||
| 1256 | ' - REQUIRED' if 'required' in param and param['required'] else |
||
| 1257 | ' - %s' % json.dumps(param['default']) if 'default' in param else '')) |
||
| 1258 | parameter_help += '\n ' + wrap(param['description']) |
||
| 1259 | if 'enum' in param: |
||
| 1260 | parameter_help += '\n ' + wrap('Possible values: %s' % json.dumps(param['enum'])) |
||
| 1261 | parameter_help += "\n" |
||
| 1262 | |||
| 1263 | if not subcommand: |
||
| 1264 | return f'''\ |
||
| 1265 | Usage: {ocrd_tool['executable']} [worker|server] [OPTIONS] |
||
| 1266 | |||
| 1267 | {ocrd_tool['description']}{doc_help} |
||
| 1268 | |||
| 1269 | Subcommands: |
||
| 1270 | {subcommands} |
||
| 1271 | Options for processing: |
||
| 1272 | {processing_options} |
||
| 1273 | Options for information: |
||
| 1274 | {information_options} |
||
| 1275 | Parameters: |
||
| 1276 | {parameter_help} |
||
| 1277 | ''' |
||
| 1278 | elif subcommand == 'worker': |
||
| 1279 | return f'''\ |
||
| 1280 | Usage: {ocrd_tool['executable']} worker [OPTIONS] |
||
| 1281 | |||
| 1282 | Run {ocrd_tool['executable']} as a processing worker. |
||
| 1283 | |||
| 1284 | {ocrd_tool['description']}{doc_help} |
||
| 1285 | |||
| 1286 | Options: |
||
| 1287 | {processing_worker_options} |
||
| 1288 | ''' |
||
| 1289 | elif subcommand == 'server': |
||
| 1290 | return f'''\ |
||
| 1291 | Usage: {ocrd_tool['executable']} server [OPTIONS] |
||
| 1292 | |||
| 1293 | Run {ocrd_tool['executable']} as a processor sever. |
||
| 1294 | |||
| 1295 | {ocrd_tool['description']}{doc_help} |
||
| 1296 | |||
| 1297 | Options: |
||
| 1298 | {processing_server_options} |
||
| 1299 | ''' |
||
| 1300 | else: |
||
| 1301 | pass |
||
| 1302 |