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""" |
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Processor base class and helper functions. |
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""" |
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__all__ = [ |
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'Processor', |
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'generate_processor_help', |
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'run_cli', |
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'run_processor' |
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] |
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from pkg_resources import resource_filename |
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from os.path import exists |
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from shutil import copyfileobj |
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import json |
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import os |
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from os import getcwd |
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from pathlib import Path |
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import sys |
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import tarfile |
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import io |
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from ocrd_utils import ( |
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VERSION as OCRD_VERSION, |
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MIMETYPE_PAGE, |
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MIME_TO_EXT, |
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getLogger, |
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initLogging, |
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list_resource_candidates, |
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pushd_popd, |
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list_all_resources, |
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get_processor_resource_types |
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) |
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from ocrd_validators import ParameterValidator |
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from ocrd_models.ocrd_page import MetadataItemType, LabelType, LabelsType |
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# XXX imports must remain for backwards-compatibilty |
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from .helpers import run_cli, run_processor, generate_processor_help # pylint: disable=unused-import |
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class Processor(): |
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""" |
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A processor is a tool that implements the uniform OCR-D command-line interface |
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for run-time data processing. That is, it executes a single workflow step, |
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or a combination of workflow steps, on the workspace (represented by local METS). |
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It reads input files for all or requested physical pages of the input fileGrp(s), |
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and writes output files for them into the output fileGrp(s). It may take |
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a number of optional or mandatory parameters. |
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""" |
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def __init__( |
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self, |
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workspace, |
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ocrd_tool=None, |
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parameter=None, |
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# TODO OCR-D/core#274 |
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# input_file_grp=None, |
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# output_file_grp=None, |
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input_file_grp="INPUT", |
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output_file_grp="OUTPUT", |
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page_id=None, |
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show_resource=None, |
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list_resources=False, |
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show_help=False, |
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show_version=False, |
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dump_json=False, |
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version=None |
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): |
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""" |
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Instantiate, but do not process. Unless ``list_resources`` or |
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``show_resource`` or ``show_help`` or ``show_version`` or |
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``dump_json`` is true, setup for processing (parsing and |
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validating parameters, entering the workspace directory). |
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Args: |
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workspace (:py:class:`~ocrd.Workspace`): The workspace to process. \ |
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Can be ``None`` even for processing (esp. on multiple workspaces), \ |
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but then needs to be set before running. |
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Keyword Args: |
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ocrd_tool (string): JSON of the ocrd-tool description for that processor. \ |
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Can be ``None`` for processing, but needs to be set before running. |
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parameter (string): JSON of the runtime choices for ocrd-tool ``parameters``. \ |
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Can be ``None`` even for processing, but then needs to be set before running. |
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input_file_grp (string): comma-separated list of METS ``fileGrp``s used for input. |
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output_file_grp (string): comma-separated list of METS ``fileGrp``s used for output. |
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page_id (string): comma-separated list of METS physical ``page`` IDs to process \ |
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(or empty for all pages). |
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show_resource (string): If not ``None``, then instead of processing, resolve \ |
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given resource by name and print its contents to stdout. |
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list_resources (boolean): If true, then instead of processing, find all installed \ |
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resource files in the search paths and print their path names. |
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show_help (boolean): If true, then instead of processing, print a usage description \ |
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including the standard CLI and all of this processor's ocrd-tool parameters and \ |
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docstrings. |
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show_version (boolean): If true, then instead of processing, print information on \ |
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this processor's version and OCR-D version. Exit afterwards. |
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dump_json (boolean): If true, then instead of processing, print :py:attr:`ocrd_tool` \ |
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on stdout. |
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""" |
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self.ocrd_tool = ocrd_tool |
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if parameter is None: |
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parameter = {} |
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if dump_json: |
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print(json.dumps(ocrd_tool, indent=True)) |
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return |
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if list_resources: |
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for res in self.list_all_resources(): |
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print(res) |
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return |
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if show_resource: |
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initLogging() |
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res_fname = self.resolve_resource(show_resource) |
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fpath = Path(res_fname) |
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if fpath.is_dir(): |
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with pushd_popd(fpath): |
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fileobj = io.BytesIO() |
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with tarfile.open(fileobj=fileobj, mode='w:gz') as tarball: |
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tarball.add('.') |
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fileobj.seek(0) |
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copyfileobj(fileobj, sys.stdout.buffer) |
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else: |
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sys.stdout.buffer.write(fpath.read_bytes()) |
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return |
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if show_help: |
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self.show_help() |
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return |
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self.version = version |
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if show_version: |
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self.show_version() |
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return |
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self.workspace = workspace |
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# FIXME HACK would be better to use pushd_popd(self.workspace.directory) |
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# but there is no way to do that in process here since it's an |
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# overridden method. chdir is almost always an anti-pattern. |
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if self.workspace: |
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self.old_pwd = getcwd() |
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os.chdir(self.workspace.directory) |
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self.input_file_grp = input_file_grp |
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self.output_file_grp = output_file_grp |
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self.page_id = None if page_id == [] or page_id is None else page_id |
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parameterValidator = ParameterValidator(ocrd_tool) |
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report = parameterValidator.validate(parameter) |
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if not report.is_valid: |
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raise Exception("Invalid parameters %s" % report.errors) |
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self.parameter = parameter |
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def show_help(self): |
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print(generate_processor_help(self.ocrd_tool, processor_instance=self)) |
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def show_version(self): |
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print("Version %s, ocrd/core %s" % (self.version, OCRD_VERSION)) |
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def verify(self): |
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""" |
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Verify that the :py:attr:`input_file_grp` fulfills the processor's requirements. |
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""" |
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return True |
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def process(self): |
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""" |
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Process the :py:attr:`workspace` |
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from the given :py:attr:`input_file_grp` |
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to the given :py:attr:`output_file_grp` |
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for the given :py:attr:`page_id` |
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under the given :py:attr:`parameter`. |
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(This contains the main functionality and needs to be overridden by subclasses.) |
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""" |
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raise Exception("Must be implemented") |
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def add_metadata(self, pcgts): |
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""" |
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Add PAGE-XML :py:class:`~ocrd_models.ocrd_page.MetadataItemType` ``MetadataItem`` describing |
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the processing step and runtime parameters to :py:class:`~ocrd_models.ocrd_page.PcGtsType` ``pcgts``. |
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""" |
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pcgts.get_Metadata().add_MetadataItem( |
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MetadataItemType(type_="processingStep", |
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name=self.ocrd_tool['steps'][0], |
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value=self.ocrd_tool['executable'], |
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Labels=[LabelsType( |
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externalModel="ocrd-tool", |
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externalId="parameters", |
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Label=[LabelType(type_=name, |
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value=self.parameter[name]) |
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for name in self.parameter.keys()]), |
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LabelsType( |
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externalModel="ocrd-tool", |
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externalId="version", |
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Label=[LabelType(type_=self.ocrd_tool['executable'], |
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value=self.version), |
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LabelType(type_='ocrd/core', |
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value=OCRD_VERSION)]) |
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])) |
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def resolve_resource(self, val): |
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""" |
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Resolve a resource name to an absolute file path with the algorithm in |
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https://ocr-d.de/en/spec/ocrd_tool#file-parameters |
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200
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Args: |
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val (string): resource value to resolve |
202
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""" |
203
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executable = self.ocrd_tool['executable'] |
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log = getLogger('ocrd.%s.resolve_resource' % executable) |
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if exists(val): |
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log.debug("Resolved to absolute path %s" % val) |
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return val |
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if hasattr(self, 'old_pwd'): |
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cwd = self.old_pwd |
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else: |
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cwd = getcwd() |
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ret = [cand for cand in list_resource_candidates(executable, val, |
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cwd=cwd, moduled=self.moduledir) |
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if exists(cand)] |
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if ret: |
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log.debug("Resolved %s to absolute path %s" % (val, ret[0])) |
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return ret[0] |
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log.error("Could not find resource '%s' for executable '%s'. " |
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"Try 'ocrd resmgr download %s %s' to download this resource.", |
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val, executable, executable, val) |
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sys.exit(1) |
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def list_all_resources(self): |
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""" |
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List all resources found in the filesystem and matching content-type by filename suffix |
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""" |
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mimetypes = get_processor_resource_types(None, self.ocrd_tool) |
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for res in list_all_resources(self.ocrd_tool['executable'], moduled=self.moduledir): |
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res = Path(res) |
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if not '*/*' in mimetypes: |
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if res.is_dir() and not 'text/directory' in mimetypes: |
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continue |
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# if we do not know all MIME types, then keep the file, otherwise require suffix match |
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if res.is_file() and not any(res.suffix == MIME_TO_EXT.get(mime, res.suffix) |
235
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for mime in mimetypes): |
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continue |
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yield res |
238
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|
239
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@property |
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def module(self): |
241
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""" |
242
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The top-level module this processor belongs to. |
243
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""" |
244
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return self.__module__.split('.')[0] |
245
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246
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@property |
247
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def moduledir(self): |
248
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""" |
249
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The filesystem path of the module directory. |
250
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""" |
251
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return resource_filename(self.module, '') |
252
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|
253
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@property |
254
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def input_files(self): |
255
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""" |
256
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List the input files (for single-valued :py:attr:`input_file_grp`). |
257
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|
258
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For each physical page: |
259
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|
260
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- If there is a single PAGE-XML for the page, take it (and forget about all |
261
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other files for that page) |
262
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- Else if there is a single image file, take it (and forget about all other |
263
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files for that page) |
264
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- Otherwise raise an error (complaining that only PAGE-XML warrants |
265
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having multiple images for a single page) |
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Algorithm <https://github.com/cisocrgroup/ocrd_cis/pull/57#issuecomment-656336593>_ |
267
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|
268
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Returns: |
269
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A list of :py:class:`ocrd_models.ocrd_file.OcrdFile` objects. |
270
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""" |
271
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if not self.input_file_grp: |
272
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raise ValueError("Processor is missing input fileGrp") |
273
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ret = self.zip_input_files(mimetype=None, on_error='abort') |
274
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if not ret: |
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return [] |
276
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assert len(ret[0]) == 1, 'Use zip_input_files() instead of input_files when processing multiple input fileGrps' |
277
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return [tuples[0] for tuples in ret] |
278
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|
279
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def zip_input_files(self, require_first=True, mimetype=None, on_error='skip'): |
280
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""" |
281
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List tuples of input files (for multi-valued :py:attr:`input_file_grp`). |
282
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|
283
|
|
|
Processors that expect/need multiple input file groups, |
284
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cannot use :py:data:`input_files`. They must align (zip) input files |
285
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across pages. This includes the case where not all pages |
286
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|
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are equally present in all file groups. It also requires |
287
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|
|
making a consistent selection if there are multiple files |
288
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per page. |
289
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|
|
|
290
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|
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Following the OCR-D functional model, this function tries to |
291
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|
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find a single PAGE file per page, or fall back to a single |
292
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|
|
image file per page. In either case, multiple matches per page |
293
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|
|
are an error (see error handling below). |
294
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|
|
This default behaviour can be changed by using a fixed MIME |
295
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|
|
type filter via :py:attr:`mimetype`. But still, multiple matching |
296
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|
|
files per page are an error. |
297
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|
|
|
298
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|
|
Single-page multiple-file errors are handled according to |
299
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|
|
:py:attr:`on_error`: |
300
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|
|
|
301
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|
|
- if ``skip``, then the page for the respective fileGrp will be |
302
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|
|
silently skipped (as if there was no match at all) |
303
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|
|
- if ``first``, then the first matching file for the page will be |
304
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|
|
silently selected (as if the first was the only match) |
305
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|
|
- if ``last``, then the last matching file for the page will be |
306
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|
|
silently selected (as if the last was the only match) |
307
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|
|
- if ``abort``, then an exception will be raised. |
308
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|
|
Multiple matches for PAGE-XML will always raise an exception. |
309
|
|
|
|
310
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|
|
Keyword Args: |
311
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|
|
require_first (boolean): If true, then skip a page entirely |
312
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|
|
whenever it is not available in the first input `fileGrp`. |
313
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|
|
mimetype (string): If not `None`, filter by the specified MIME |
314
|
|
|
type (literal or regex prefixed by `//`). Otherwise prefer |
315
|
|
|
PAGE or image. |
316
|
|
|
Returns: |
317
|
|
|
A list of :py:class:`ocrd_models.ocrd_file.OcrdFile` tuples. |
318
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|
|
""" |
319
|
|
|
if not self.input_file_grp: |
320
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|
|
raise ValueError("Processor is missing input fileGrp") |
321
|
|
|
|
322
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|
|
LOG = getLogger('ocrd.processor.base') |
323
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|
|
ifgs = self.input_file_grp.split(",") |
324
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|
|
# Iterating over all files repeatedly may seem inefficient at first sight, |
325
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|
|
# but the unnecessary OcrdFile instantiations for posterior fileGrp filtering |
326
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|
|
# can actually be much more costly than traversing the ltree. |
327
|
|
|
# This might depend on the number of pages vs number of fileGrps. |
328
|
|
|
|
329
|
|
|
pages = dict() |
330
|
|
|
for i, ifg in enumerate(ifgs): |
331
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|
for file_ in sorted(self.workspace.mets.find_all_files( |
332
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|
|
pageId=self.page_id, fileGrp=ifg, mimetype=mimetype), |
333
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|
|
# sort by MIME type so PAGE comes before images |
334
|
|
|
key=lambda file_: file_.mimetype): |
335
|
|
|
if not file_.pageId: |
336
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|
|
continue |
337
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|
|
ift = pages.setdefault(file_.pageId, [None]*len(ifgs)) |
338
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|
|
if ift[i]: |
339
|
|
|
LOG.debug("another file %s for page %s in input file group %s", file_.ID, file_.pageId, ifg) |
340
|
|
|
# fileGrp has multiple files for this page ID |
341
|
|
|
if mimetype: |
342
|
|
|
# filter was active, this must not happen |
343
|
|
View Code Duplication |
if on_error == 'skip': |
|
|
|
|
344
|
|
|
ift[i] = None |
345
|
|
|
elif on_error == 'first': |
346
|
|
|
pass # keep first match |
347
|
|
|
elif on_error == 'last': |
348
|
|
|
ift[i] = file_ |
349
|
|
|
elif on_error == 'abort': |
350
|
|
|
raise ValueError( |
351
|
|
|
"Multiple '%s' matches for page '%s' in fileGrp '%s'." % ( |
352
|
|
|
mimetype, file_.pageId, ifg)) |
353
|
|
|
else: |
354
|
|
|
raise Exception("Unknown 'on_error' strategy '%s'" % on_error) |
355
|
|
|
elif (ift[i].mimetype == MIMETYPE_PAGE and |
356
|
|
|
file_.mimetype != MIMETYPE_PAGE): |
357
|
|
|
pass # keep PAGE match |
358
|
|
|
elif (ift[i].mimetype == MIMETYPE_PAGE and |
359
|
|
|
file_.mimetype == MIMETYPE_PAGE): |
360
|
|
|
raise ValueError( |
361
|
|
|
"Multiple PAGE-XML matches for page '%s' in fileGrp '%s'." % ( |
362
|
|
|
file_.pageId, ifg)) |
363
|
|
|
else: |
364
|
|
|
# filter was inactive but no PAGE is in control, this must not happen |
365
|
|
View Code Duplication |
if on_error == 'skip': |
|
|
|
|
366
|
|
|
ift[i] = None |
367
|
|
|
elif on_error == 'first': |
368
|
|
|
pass # keep first match |
369
|
|
|
elif on_error == 'last': |
370
|
|
|
ift[i] = file_ |
371
|
|
|
elif on_error == 'abort': |
372
|
|
|
raise ValueError( |
373
|
|
|
"No PAGE-XML for page '%s' in fileGrp '%s' but multiple matches." % ( |
374
|
|
|
file_.pageId, ifg)) |
375
|
|
|
else: |
376
|
|
|
raise Exception("Unknown 'on_error' strategy '%s'" % on_error) |
377
|
|
|
else: |
378
|
|
|
LOG.debug("adding file %s for page %s to input file group %s", file_.ID, file_.pageId, ifg) |
379
|
|
|
ift[i] = file_ |
380
|
|
|
ifts = list() |
381
|
|
|
for page, ifiles in pages.items(): |
382
|
|
|
for i, ifg in enumerate(ifgs): |
383
|
|
|
if not ifiles[i]: |
384
|
|
|
# other fallback options? |
385
|
|
|
LOG.error('found no page %s in file group %s', |
386
|
|
|
page, ifg) |
387
|
|
|
if ifiles[0] or not require_first: |
388
|
|
|
ifts.append(tuple(ifiles)) |
389
|
|
|
return ifts |
390
|
|
|
|