| 
                    1
                 | 
                                    
                                                     | 
                
                 | 
                """ The database is used to store information regarding jobs and workspaces.  | 
            
            
                                                        
            
                                    
            
            
                | 
                    2
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    3
                 | 
                                    
                                                     | 
                
                 | 
                Jobs: for every process-request a job is inserted into the database with an uuid, status and  | 
            
            
                                                        
            
                                    
            
            
                | 
                    4
                 | 
                                    
                                                     | 
                
                 | 
                information about the process like parameters and file groups. It is mainly used to track the status  | 
            
            
                                                        
            
                                    
            
            
                | 
                    5
                 | 
                                    
                                                     | 
                
                 | 
                (`ocrd_network.models.job.StateEnum`) of a job so that the state of a job can be queried. Finished  | 
            
            
                                                        
            
                                    
            
            
                | 
                    6
                 | 
                                    
                                                     | 
                
                 | 
                jobs are not deleted from the database.  | 
            
            
                                                        
            
                                    
            
            
                | 
                    7
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    8
                 | 
                                    
                                                     | 
                
                 | 
                Workspaces: A job or a processor always runs on a workspace. So a processor needs the information  | 
            
            
                                                        
            
                                    
            
            
                | 
                    9
                 | 
                                    
                                                     | 
                
                 | 
                where the workspace is available. This information can be set with providing an absolute path or a  | 
            
            
                                                        
            
                                    
            
            
                | 
                    10
                 | 
                                    
                                                     | 
                
                 | 
                workspace_id. With the latter, the database is used to convert the workspace_id to a path.  | 
            
            
                                                        
            
                                    
            
            
                | 
                    11
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    12
                 | 
                                    
                                                     | 
                
                 | 
                XXX: Currently the information is not preserved after the processing-server shuts down as the  | 
            
            
                                                        
            
                                    
            
            
                | 
                    13
                 | 
                                    
                                                     | 
                
                 | 
                database (runs in docker) currently has no volume set.  | 
            
            
                                                        
            
                                    
            
            
                | 
                    14
                 | 
                                    
                                                     | 
                
                 | 
                """  | 
            
            
                                                        
            
                                    
            
            
                | 
                    15
                 | 
                                    
                                                     | 
                
                 | 
                from beanie import init_beanie  | 
            
            
                                                        
            
                                    
            
            
                | 
                    16
                 | 
                                    
                                                     | 
                
                 | 
                from beanie.operators import In  | 
            
            
                                                        
            
                                    
            
            
                | 
                    17
                 | 
                                    
                                                     | 
                
                 | 
                from motor.motor_asyncio import AsyncIOMotorClient  | 
            
            
                                                        
            
                                    
            
            
                | 
                    18
                 | 
                                    
                                                     | 
                
                 | 
                from uuid import uuid4  | 
            
            
                                                        
            
                                    
            
            
                | 
                    19
                 | 
                                    
                                                     | 
                
                 | 
                from pathlib import Path  | 
            
            
                                                        
            
                                    
            
            
                | 
                    20
                 | 
                                    
                                                     | 
                
                 | 
                from typing import List  | 
            
            
                                                        
            
                                    
            
            
                | 
                    21
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    22
                 | 
                                    
                                                     | 
                
                 | 
                from .models import (  | 
            
            
                                                        
            
                                    
            
            
                | 
                    23
                 | 
                                    
                                                     | 
                
                 | 
                    DBProcessorJob,  | 
            
            
                                                        
            
                                    
            
            
                | 
                    24
                 | 
                                    
                                                     | 
                
                 | 
                    DBWorkflowJob,  | 
            
            
                                                        
            
                                    
            
            
                | 
                    25
                 | 
                                    
                                                     | 
                
                 | 
                    DBWorkspace  | 
            
            
                                                        
            
                                    
            
            
                | 
                    26
                 | 
                                    
                                                     | 
                
                 | 
                )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    27
                 | 
                                    
                                                     | 
                
                 | 
                from .utils import call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    28
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    29
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    30
                 | 
                                    
                                                     | 
                
                 | 
                async def initiate_database(db_url: str):  | 
            
            
                                                        
            
                                    
            
            
                | 
                    31
                 | 
                                    
                                                     | 
                
                 | 
                    client = AsyncIOMotorClient(db_url)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    32
                 | 
                                    
                                                     | 
                
                 | 
                    await init_beanie(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    33
                 | 
                                    
                                                     | 
                
                 | 
                        database=client.get_default_database(default='ocrd'),  | 
            
            
                                                        
            
                                    
            
            
                | 
                    34
                 | 
                                    
                                                     | 
                
                 | 
                        document_models=[DBProcessorJob, DBWorkflowJob, DBWorkspace]  | 
            
            
                                                        
            
                                    
            
            
                | 
                    35
                 | 
                                    
                                                     | 
                
                 | 
                    )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    36
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    37
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    38
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    39
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_initiate_database(db_url: str):  | 
            
            
                                                        
            
                                    
            
            
                | 
                    40
                 | 
                                    
                                                     | 
                
                 | 
                    await initiate_database(db_url)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    41
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    42
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    43
                 | 
                                    
                                                     | 
                
                 | 
                async def db_create_workspace(mets_path: str) -> DBWorkspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    44
                 | 
                                    
                                                     | 
                
                 | 
                    """ Create a workspace-database entry only from a mets-path  | 
            
            
                                                        
            
                                    
            
            
                | 
                    45
                 | 
                                    
                                                     | 
                
                 | 
                    """  | 
            
            
                                                        
            
                                    
            
            
                | 
                    46
                 | 
                                    
                                                     | 
                
                 | 
                    if not Path(mets_path).exists():  | 
            
            
                                                        
            
                                    
            
            
                | 
                    47
                 | 
                                    
                                                     | 
                
                 | 
                        raise FileNotFoundError(f'Cannot create DB workspace entry, `{mets_path}` does not exist!') | 
            
            
                                                        
            
                                    
            
            
                | 
                    48
                 | 
                                    
                                                     | 
                
                 | 
                    try:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    49
                 | 
                                    
                                                     | 
                
                 | 
                        return await db_get_workspace(workspace_mets_path=mets_path)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    50
                 | 
                                    
                                                     | 
                
                 | 
                    except ValueError:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    51
                 | 
                                    
                                                     | 
                
                 | 
                        workspace_db = DBWorkspace(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    52
                 | 
                                    
                                                     | 
                
                 | 
                            workspace_id=str(uuid4()),  | 
            
            
                                                        
            
                                    
            
            
                | 
                    53
                 | 
                                    
                                                     | 
                
                 | 
                            workspace_path=Path(mets_path).parent,  | 
            
            
                                                        
            
                                    
            
            
                | 
                    54
                 | 
                                    
                                                     | 
                
                 | 
                            workspace_mets_path=mets_path,  | 
            
            
                                                        
            
                                    
            
            
                | 
                    55
                 | 
                                    
                                                     | 
                
                 | 
                            ocrd_identifier="",  | 
            
            
                                                        
            
                                    
            
            
                | 
                    56
                 | 
                                    
                                                     | 
                
                 | 
                            bagit_profile_identifier="",  | 
            
            
                                                        
            
                                    
            
            
                | 
                    57
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    58
                 | 
                                    
                                                     | 
                
                 | 
                        await workspace_db.save()  | 
            
            
                                                        
            
                                    
            
            
                | 
                    59
                 | 
                                    
                                                     | 
                
                 | 
                        return workspace_db  | 
            
            
                                                        
            
                                    
            
            
                | 
                    60
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    61
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    62
                 | 
                                    
                                                     | 
                
                 | 
                async def db_get_workspace(workspace_id: str = None, workspace_mets_path: str = None) -> DBWorkspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    63
                 | 
                                    
                                                     | 
                
                 | 
                    workspace = None  | 
            
            
                                                        
            
                                    
            
            
                | 
                    64
                 | 
                                    
                                                     | 
                
                 | 
                    if not workspace_id and not workspace_mets_path:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    65
                 | 
                                    
                                                     | 
                
                 | 
                        raise ValueError(f'Either `workspace_id` or `workspace_mets_path` field must be used as a search key')  | 
            
            
                                                        
            
                                    
            
            
                | 
                    66
                 | 
                                    
                                                     | 
                
                 | 
                    if workspace_id:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    67
                 | 
                                    
                                                     | 
                
                 | 
                        workspace = await DBWorkspace.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    68
                 | 
                                    
                                                     | 
                
                 | 
                            DBWorkspace.workspace_id == workspace_id  | 
            
            
                                                        
            
                                    
            
            
                | 
                    69
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    70
                 | 
                                    
                                                     | 
                
                 | 
                        if not workspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    71
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Workspace with id "{workspace_id}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    72
                 | 
                                    
                                                     | 
                
                 | 
                    if workspace_mets_path:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    73
                 | 
                                    
                                                     | 
                
                 | 
                        workspace = await DBWorkspace.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    74
                 | 
                                    
                                                     | 
                
                 | 
                            DBWorkspace.workspace_mets_path == workspace_mets_path  | 
            
            
                                                        
            
                                    
            
            
                | 
                    75
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    76
                 | 
                                    
                                                     | 
                
                 | 
                        if not workspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    77
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Workspace with path "{workspace_mets_path}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    78
                 | 
                                    
                                                     | 
                
                 | 
                    return workspace  | 
            
            
                                                        
            
                                    
            
            
                | 
                    79
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    80
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    81
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    82
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_get_workspace(workspace_id: str = None, workspace_mets_path: str = None) -> DBWorkspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    83
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_get_workspace(workspace_id=workspace_id, workspace_mets_path=workspace_mets_path)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    84
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    85
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    86
                 | 
                                    
                                                     | 
                
                 | 
                async def db_update_workspace(workspace_id: str = None, workspace_mets_path: str = None, **kwargs) -> DBWorkspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    87
                 | 
                                    
                                                     | 
                
                 | 
                    workspace = None  | 
            
            
                                                        
            
                                    
            
            
                | 
                    88
                 | 
                                    
                                                     | 
                
                 | 
                    if not workspace_id and not workspace_mets_path:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    89
                 | 
                                    
                                                     | 
                
                 | 
                        raise ValueError(f'Either `workspace_id` or `workspace_mets_path` field must be used as a search key')  | 
            
            
                                                        
            
                                    
            
            
                | 
                    90
                 | 
                                    
                                                     | 
                
                 | 
                    if workspace_id:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    91
                 | 
                                    
                                                     | 
                
                 | 
                        workspace = await DBWorkspace.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    92
                 | 
                                    
                                                     | 
                
                 | 
                            DBWorkspace.workspace_id == workspace_id  | 
            
            
                                                        
            
                                    
            
            
                | 
                    93
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    94
                 | 
                                    
                                                     | 
                
                 | 
                        if not workspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    95
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Workspace with id "{workspace_id}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    96
                 | 
                                    
                                                     | 
                
                 | 
                    if workspace_mets_path:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    97
                 | 
                                    
                                                     | 
                
                 | 
                        workspace = await DBWorkspace.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    98
                 | 
                                    
                                                     | 
                
                 | 
                            DBWorkspace.workspace_mets_path == workspace_mets_path  | 
            
            
                                                        
            
                                    
            
            
                | 
                    99
                 | 
                                    
                                                     | 
                
                 | 
                        )  | 
            
            
                                                        
            
                                    
            
            
                | 
                    100
                 | 
                                    
                                                     | 
                
                 | 
                        if not workspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    101
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Workspace with path "{workspace_mets_path}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    102
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    103
                 | 
                                    
                                                     | 
                
                 | 
                    job_keys = list(workspace.__dict__.keys())  | 
            
            
                                                        
            
                                    
            
            
                | 
                    104
                 | 
                                    
                                                     | 
                
                 | 
                    for key, value in kwargs.items():  | 
            
            
                                                        
            
                                    
            
            
                | 
                    105
                 | 
                                    
                                                     | 
                
                 | 
                        if key not in job_keys:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    106
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Field "{key}" is not available.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    107
                 | 
                                    
                                                     | 
                
                 | 
                        if key == 'workspace_id':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    108
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.workspace_id = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    109
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'workspace_mets_path':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    110
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.workspace_mets_path = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    111
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'ocrd_identifier':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    112
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.ocrd_identifier = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    113
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'bagit_profile_identifier':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    114
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.bagit_profile_identifier = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    115
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'ocrd_base_version_checksum':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    116
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.ocrd_base_version_checksum = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    117
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'ocrd_mets':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    118
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.ocrd_mets = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    119
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'bag_info_adds':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    120
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.bag_info_adds = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    121
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'deleted':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    122
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.deleted = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    123
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'mets_server_url':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    124
                 | 
                                    
                                                     | 
                
                 | 
                            workspace.mets_server_url = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    125
                 | 
                                    
                                                     | 
                
                 | 
                        else:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    126
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Field "{key}" is not updatable.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    127
                 | 
                                    
                                                     | 
                
                 | 
                    await workspace.save()  | 
            
            
                                                        
            
                                    
            
            
                | 
                    128
                 | 
                                    
                                                     | 
                
                 | 
                    return workspace  | 
            
            
                                                        
            
                                    
            
            
                | 
                    129
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    130
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    131
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    132
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_update_workspace(workspace_id: str = None, workspace_mets_path: str = None, **kwargs) -> DBWorkspace:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    133
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_update_workspace(workspace_id=workspace_id, workspace_mets_path=workspace_mets_path, **kwargs)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    134
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    135
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    136
                 | 
                                    
                                                     | 
                
                 | 
                async def db_get_processing_job(job_id: str) -> DBProcessorJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    137
                 | 
                                    
                                                     | 
                
                 | 
                    job = await DBProcessorJob.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    138
                 | 
                                    
                                                     | 
                
                 | 
                        DBProcessorJob.job_id == job_id)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    139
                 | 
                                    
                                                     | 
                
                 | 
                    if not job:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    140
                 | 
                                    
                                                     | 
                
                 | 
                        raise ValueError(f'Processing job with id "{job_id}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    141
                 | 
                                    
                                                     | 
                
                 | 
                    return job  | 
            
            
                                                        
            
                                    
            
            
                | 
                    142
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    143
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    144
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    145
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_get_processing_job(job_id: str) -> DBProcessorJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    146
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_get_processing_job(job_id)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    147
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    148
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    149
                 | 
                                    
                                                     | 
                
                 | 
                async def db_update_processing_job(job_id: str, **kwargs) -> DBProcessorJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    150
                 | 
                                    
                                                     | 
                
                 | 
                    job = await DBProcessorJob.find_one(  | 
            
            
                                                        
            
                                    
            
            
                | 
                    151
                 | 
                                    
                                                     | 
                
                 | 
                        DBProcessorJob.job_id == job_id)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    152
                 | 
                                    
                                                     | 
                
                 | 
                    if not job:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    153
                 | 
                                    
                                                     | 
                
                 | 
                        raise ValueError(f'Processing job with id "{job_id}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    154
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    155
                 | 
                                    
                                                     | 
                
                 | 
                    job_keys = list(job.__dict__.keys())  | 
            
            
                                                        
            
                                    
            
            
                | 
                    156
                 | 
                                    
                                                     | 
                
                 | 
                    for key, value in kwargs.items():  | 
            
            
                                                        
            
                                    
            
            
                | 
                    157
                 | 
                                    
                                                     | 
                
                 | 
                        if key not in job_keys:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    158
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Field "{key}" is not available.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    159
                 | 
                                    
                                                     | 
                
                 | 
                        if key == 'state':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    160
                 | 
                                    
                                                     | 
                
                 | 
                            job.state = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    161
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'start_time':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    162
                 | 
                                    
                                                     | 
                
                 | 
                            job.start_time = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    163
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'end_time':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    164
                 | 
                                    
                                                     | 
                
                 | 
                            job.end_time = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    165
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'path_to_mets':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    166
                 | 
                                    
                                                     | 
                
                 | 
                            job.path_to_mets = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    167
                 | 
                                    
                                                     | 
                
                 | 
                        elif key == 'exec_time':  | 
            
            
                                                        
            
                                    
            
            
                | 
                    168
                 | 
                                    
                                                     | 
                
                 | 
                            job.exec_time = value  | 
            
            
                                                        
            
                                    
            
            
                | 
                    169
                 | 
                                    
                                                     | 
                
                 | 
                        else:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    170
                 | 
                                    
                                                     | 
                
                 | 
                            raise ValueError(f'Field "{key}" is not updatable.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    171
                 | 
                                    
                                                     | 
                
                 | 
                    await job.save()  | 
            
            
                                                        
            
                                    
            
            
                | 
                    172
                 | 
                                    
                                                     | 
                
                 | 
                    return job  | 
            
            
                                                        
            
                                    
            
            
                | 
                    173
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    174
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    175
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    176
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_update_processing_job(job_id: str, **kwargs) -> DBProcessorJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    177
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_update_processing_job(job_id=job_id, **kwargs)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    178
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    179
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    180
                 | 
                                    
                                                     | 
                
                 | 
                async def db_get_workflow_job(job_id: str) -> DBWorkflowJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    181
                 | 
                                    
                                                     | 
                
                 | 
                    job = await DBWorkflowJob.find_one(DBWorkflowJob.job_id == job_id)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    182
                 | 
                                    
                                                     | 
                
                 | 
                    if not job:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    183
                 | 
                                    
                                                     | 
                
                 | 
                        raise ValueError(f'Workflow job with id "{job_id}" not in the DB.') | 
            
            
                                                        
            
                                    
            
            
                | 
                    184
                 | 
                                    
                                                     | 
                
                 | 
                    return job  | 
            
            
                                                        
            
                                    
            
            
                | 
                    185
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    186
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    187
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    188
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_get_workflow_job(job_id: str) -> DBWorkflowJob:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    189
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_get_workflow_job(job_id)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    190
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    191
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    192
                 | 
                                    
                                                     | 
                
                 | 
                async def db_get_processing_jobs(job_ids: List[str]) -> [DBProcessorJob]:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    193
                 | 
                                    
                                                     | 
                
                 | 
                    jobs = await DBProcessorJob.find(In(DBProcessorJob.job_id, job_ids)).to_list()  | 
            
            
                                                        
            
                                    
            
            
                | 
                    194
                 | 
                                    
                                                     | 
                
                 | 
                    return jobs  | 
            
            
                                                        
            
                                    
            
            
                | 
                    195
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    196
                 | 
                                    
                                                     | 
                
                 | 
                 | 
            
            
                                                        
            
                                    
            
            
                | 
                    197
                 | 
                                    
                                                     | 
                
                 | 
                @call_sync  | 
            
            
                                                        
            
                                    
            
            
                | 
                    198
                 | 
                                    
                                                     | 
                
                 | 
                async def sync_db_get_processing_jobs(job_ids: List[str]) -> [DBProcessorJob]:  | 
            
            
                                                        
            
                                    
            
            
                | 
                    199
                 | 
                                    
                                                     | 
                
                 | 
                    return await db_get_processing_jobs(job_ids)  | 
            
            
                                                        
            
                                    
            
            
                | 
                    200
                 | 
                                    
                                                     | 
                
                 | 
                 |