| Total Complexity | 203 |
| Total Lines | 1246 |
| Duplicated Lines | 4.98 % |
| Changes | 0 | ||
Duplicate code is one of the most pungent code smells. A rule that is often used is to re-structure code once it is duplicated in three or more places.
Common duplication problems, and corresponding solutions are:
Complex classes like ocrd.workspace often do a lot of different things. To break such a class down, we need to identify a cohesive component within that class. A common approach to find such a component is to look for fields/methods that share the same prefixes, or suffixes.
Once you have determined the fields that belong together, you can apply the Extract Class refactoring. If the component makes sense as a sub-class, Extract Subclass is also a candidate, and is often faster.
| 1 | import io |
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| 2 | from os import makedirs, unlink, listdir, path |
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| 3 | from pathlib import Path |
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| 4 | from shutil import copyfileobj |
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| 5 | from re import sub |
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| 6 | from tempfile import NamedTemporaryFile |
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| 7 | from contextlib import contextmanager |
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| 8 | from typing import Optional, Union, Callable |
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| 9 | |||
| 10 | from cv2 import COLOR_GRAY2BGR, COLOR_RGB2BGR, cvtColor |
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| 11 | from PIL import Image |
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| 12 | import numpy as np |
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| 13 | from deprecated.sphinx import deprecated |
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| 14 | import requests |
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| 15 | |||
| 16 | from ocrd_models import OcrdMets, OcrdFile |
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| 17 | from ocrd_models.ocrd_file import ClientSideOcrdFile |
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| 18 | from ocrd_models.ocrd_page import parse, BorderType, to_xml |
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| 19 | from ocrd_modelfactory import exif_from_filename, page_from_file |
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| 20 | from ocrd_utils import ( |
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| 21 | atomic_write, |
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| 22 | config, |
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| 23 | getLogger, |
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| 24 | image_from_polygon, |
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| 25 | coordinates_of_segment, |
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| 26 | adjust_canvas_to_rotation, |
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| 27 | adjust_canvas_to_transposition, |
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| 28 | scale_coordinates, |
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| 29 | shift_coordinates, |
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| 30 | rotate_coordinates, |
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| 31 | transform_coordinates, |
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| 32 | transpose_coordinates, |
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| 33 | crop_image, |
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| 34 | rotate_image, |
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| 35 | transpose_image, |
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| 36 | bbox_from_polygon, |
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| 37 | polygon_from_points, |
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| 38 | xywh_from_bbox, |
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| 39 | pushd_popd, |
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| 40 | is_local_filename, |
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| 41 | deprecated_alias, |
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| 42 | DEFAULT_METS_BASENAME, |
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| 43 | MIME_TO_EXT, |
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| 44 | MIME_TO_PIL, |
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| 45 | MIMETYPE_PAGE, |
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| 46 | REGEX_PREFIX, |
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| 47 | ) |
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| 48 | |||
| 49 | from .workspace_backup import WorkspaceBackupManager |
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| 50 | from .mets_server import ClientSideOcrdMets |
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| 51 | |||
| 52 | __all__ = ['Workspace'] |
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| 53 | |||
| 54 | @contextmanager |
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| 55 | def download_temporary_file(url): |
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| 56 | with NamedTemporaryFile(prefix='ocrd-download-') as f: |
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| 57 | with requests.get(url) as r: |
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| 58 | f.write(r.content) |
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| 59 | yield f |
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| 60 | |||
| 61 | |||
| 62 | class Workspace(): |
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| 63 | """ |
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| 64 | A workspace is a temporary directory set up for a processor. It's the |
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| 65 | interface to the METS/PAGE XML and delegates download and upload to the |
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| 66 | :py:class:`ocrd.resolver.Resolver`. |
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| 67 | |||
| 68 | Args: |
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| 69 | resolver (:py:class:`ocrd.Resolver`) : `Resolver` instance |
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| 70 | directory (string) : Filesystem path to work in |
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| 71 | mets (:py:class:`ocrd_models.ocrd_mets.OcrdMets`) : `OcrdMets` representing this workspace. |
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| 72 | If `None`, then loaded from ``directory``/``mets_basename`` |
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| 73 | or delegated to ``mets_server_url``. |
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| 74 | mets_basename (string, mets.xml) : Basename of the METS XML file in the workspace directory. |
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| 75 | mets_server_url (string, None) : URI of TCP or local path of UDS for METS server handling the |
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| 76 | `OcrdMets` of this workspace. If `None`, then the METS will be read from and written to |
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| 77 | the filesystem directly. |
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| 78 | baseurl (string, None) : Base URL to prefix to relative URL. |
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| 79 | """ |
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| 80 | |||
| 81 | def __init__( |
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| 82 | self, |
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| 83 | resolver, |
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| 84 | directory, |
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| 85 | mets : Optional[Union[OcrdMets, ClientSideOcrdMets]] = None, |
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| 86 | mets_basename=DEFAULT_METS_BASENAME, |
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| 87 | automatic_backup=False, |
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| 88 | baseurl=None, |
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| 89 | mets_server_url=None |
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| 90 | ): |
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| 91 | self.resolver = resolver |
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| 92 | self.directory = directory |
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| 93 | self.mets_target = str(Path(directory, mets_basename)) |
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| 94 | self.is_remote = bool(mets_server_url) |
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| 95 | if mets is None: |
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| 96 | if self.is_remote: |
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| 97 | mets = ClientSideOcrdMets(mets_server_url, self.directory) |
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| 98 | if mets.workspace_path != self.directory: |
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| 99 | raise ValueError(f"METS server {mets_server_url} workspace directory '{mets.workspace_path}' differs " |
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| 100 | f"from local workspace directory '{self.directory}'. These are not the same workspaces.") |
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| 101 | else: |
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| 102 | mets = OcrdMets(filename=self.mets_target) |
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| 103 | self.mets = mets |
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| 104 | if automatic_backup: |
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| 105 | self.automatic_backup = WorkspaceBackupManager(self) |
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| 106 | self.automatic_backup.add() |
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| 107 | else: |
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| 108 | self.automatic_backup = None |
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| 109 | self.baseurl = baseurl |
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| 110 | # print(mets.to_xml(xmllint=True).decode('utf-8')) |
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| 111 | |||
| 112 | def __repr__(self): |
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| 113 | return 'Workspace[remote=%s, directory=%s, baseurl=%s, file_groups=%s, files=%s]' % ( |
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| 114 | self.is_remote, |
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| 115 | self.directory, |
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| 116 | self.baseurl, |
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| 117 | self.mets.file_groups, |
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| 118 | [str(f) for f in self.mets.find_all_files()], |
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| 119 | ) |
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| 120 | |||
| 121 | def reload_mets(self): |
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| 122 | """ |
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| 123 | Reload METS from the filesystem. |
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| 124 | """ |
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| 125 | if self.is_remote: |
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| 126 | self.mets.reload() |
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| 127 | else: |
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| 128 | self.mets = OcrdMets(filename=self.mets_target) |
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| 129 | |||
| 130 | @deprecated_alias(pageId="page_id") |
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| 131 | @deprecated_alias(ID="file_id") |
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| 132 | @deprecated_alias(fileGrp="file_grp") |
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| 133 | @deprecated_alias(fileGrp_mapping="filegrp_mapping") |
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| 134 | def merge(self, other_workspace, copy_files=True, overwrite=False, **kwargs): |
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| 135 | """ |
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| 136 | Merge ``other_workspace`` into this one |
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| 137 | |||
| 138 | See :py:meth:`ocrd_models.ocrd_mets.OcrdMets.merge` for the `kwargs` |
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| 139 | |||
| 140 | Keyword Args: |
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| 141 | copy_files (boolean): Whether to copy files from `other_workspace` to this one |
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| 142 | """ |
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| 143 | def after_add_cb(f): |
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| 144 | """callback to run on merged OcrdFile instances in the destination""" |
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| 145 | if not f.local_filename: |
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| 146 | # OcrdFile has no local_filename, so nothing to be copied |
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| 147 | return |
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| 148 | if not copy_files: |
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| 149 | fpath_src = Path(other_workspace.directory).resolve() |
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| 150 | fpath_dst = Path(self.directory).resolve() |
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| 151 | dstprefix = fpath_src.relative_to(fpath_dst) # raises ValueError if not a subpath |
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| 152 | f.local_filename = dstprefix / f.local_filename |
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| 153 | return |
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| 154 | fpath_src = Path(other_workspace.directory, f.local_filename) |
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| 155 | fpath_dest = Path(self.directory, f.local_filename) |
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| 156 | if fpath_src.exists(): |
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| 157 | if fpath_dest.exists() and not overwrite: |
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| 158 | raise FileExistsError("Copying %s to %s would overwrite the latter" % (fpath_src, fpath_dest)) |
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| 159 | if not fpath_dest.parent.is_dir(): |
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| 160 | makedirs(str(fpath_dest.parent)) |
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| 161 | with open(str(fpath_src), 'rb') as fstream_in, open(str(fpath_dest), 'wb') as fstream_out: |
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| 162 | copyfileobj(fstream_in, fstream_out) |
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| 163 | if 'page_id' in kwargs: |
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| 164 | kwargs['pageId'] = kwargs.pop('page_id') |
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| 165 | if 'file_id' in kwargs: |
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| 166 | kwargs['ID'] = kwargs.pop('file_id') |
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| 167 | if 'file_grp' in kwargs: |
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| 168 | kwargs['fileGrp'] = kwargs.pop('file_grp') |
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| 169 | if 'filegrp_mapping' in kwargs: |
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| 170 | kwargs['fileGrp_mapping'] = kwargs.pop('filegrp_mapping') |
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| 171 | |||
| 172 | self.mets.merge(other_workspace.mets, after_add_cb=after_add_cb, **kwargs) |
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| 173 | |||
| 174 | |||
| 175 | @deprecated(version='1.0.0', reason="Use workspace.download_file") |
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| 176 | def download_url(self, url, **kwargs): |
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| 177 | """ |
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| 178 | Download a URL to the workspace. |
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| 179 | |||
| 180 | Args: |
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| 181 | url (string): URL to download to directory |
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| 182 | **kwargs : See :py:class:`ocrd_models.ocrd_file.OcrdFile` |
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| 183 | |||
| 184 | Returns: |
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| 185 | The local filename of the downloaded file |
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| 186 | """ |
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| 187 | dummy_mets = OcrdMets.empty_mets() |
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| 188 | f = dummy_mets.add_file('DEPRECATED', ID=Path(url).name, url=url) |
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| 189 | f = self.download_file(f) |
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| 190 | return f.local_filename |
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| 191 | |||
| 192 | def download_file(self, f, _recursion_count=0): |
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| 193 | """ |
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| 194 | Download a :py:class:`ocrd_models.ocrd_file.OcrdFile` to the workspace. |
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| 195 | """ |
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| 196 | log = getLogger('ocrd.workspace.download_file') |
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| 197 | with pushd_popd(self.directory): |
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| 198 | if f.local_filename: |
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| 199 | file_path = Path(f.local_filename).absolute() |
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| 200 | if file_path.exists(): |
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| 201 | try: |
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| 202 | file_path.relative_to(Path(self.directory).resolve()) # raises ValueError if not relative |
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| 203 | # If the f.local_filename exists and is within self.directory, nothing to do |
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| 204 | log.debug(f"'local_filename' {f.local_filename} already within {self.directory} - nothing to do") |
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| 205 | except ValueError: |
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| 206 | # f.local_filename exists, but not within self.directory, copy it |
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| 207 | log.debug("Copying 'local_filename' %s to workspace directory %s" % (f.local_filename, self.directory)) |
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| 208 | f.local_filename = self.resolver.download_to_directory(self.directory, f.local_filename, subdir=f.fileGrp) |
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| 209 | return f |
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| 210 | if f.url: |
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| 211 | log.debug("OcrdFile has 'local_filename' but it doesn't resolve - trying to download from 'url' %s", f.url) |
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| 212 | url = f.url |
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| 213 | elif self.baseurl: |
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| 214 | log.debug("OcrdFile has 'local_filename' but it doesn't resolve, and no 'url' - trying 'baseurl' %s with 'local_filename' %s", |
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| 215 | self.baseurl, f.local_filename) |
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| 216 | url = '%s/%s' % (self.baseurl, f.local_filename) |
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| 217 | else: |
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| 218 | raise FileNotFoundError(f"'local_filename' {f.local_filename} points to non-existing file, " |
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| 219 | "and no 'url' to download and no 'baseurl' set on workspace - nothing we can do.") |
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| 220 | file_path = Path(f.local_filename) |
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| 221 | self.resolver.download_to_directory(self.directory, url, subdir=file_path.parent, basename=file_path.name) |
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| 222 | return f |
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| 223 | if f.url: |
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| 224 | # If f.url is set, download the file to the workspace |
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| 225 | basename = '%s%s' % (f.ID, MIME_TO_EXT.get(f.mimetype, '')) if f.ID else f.basename |
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| 226 | f.local_filename = self.resolver.download_to_directory(self.directory, f.url, subdir=f.fileGrp, basename=basename) |
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| 227 | return f |
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| 228 | # If neither f.local_filename nor f.url is set, fail |
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| 229 | raise ValueError(f"OcrdFile {f} has neither 'url' nor 'local_filename', so cannot be downloaded") |
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| 230 | |||
| 231 | def remove_file(self, file_id, force=False, keep_file=False, page_recursive=False, page_same_group=False): |
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| 232 | """ |
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| 233 | Remove a METS `file` from the workspace. |
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| 234 | |||
| 235 | Arguments: |
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| 236 | file_id (string|:py:class:`ocrd_models.ocrd_file.OcrdFile`): `@ID` of the METS `file` |
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| 237 | to delete or the file itself |
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| 238 | Keyword Args: |
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| 239 | force (boolean): Continue removing even if file not found in METS |
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| 240 | keep_file (boolean): Whether to keep files on disk |
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| 241 | page_recursive (boolean): Whether to remove all images referenced in the file |
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| 242 | if the file is a PAGE-XML document. |
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| 243 | page_same_group (boolean): Remove only images in the same file group as the PAGE-XML. |
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| 244 | Has no effect unless ``page_recursive`` is `True`. |
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| 245 | """ |
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| 246 | log = getLogger('ocrd.workspace.remove_file') |
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| 247 | log.debug('Deleting mets:file %s', file_id) |
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| 248 | if isinstance(file_id, OcrdFile): |
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| 249 | file_id = file_id.ID |
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| 250 | try: |
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| 251 | try: |
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| 252 | ocrd_file = next(self.mets.find_files(ID=file_id)) |
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| 253 | except StopIteration: |
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| 254 | if file_id.startswith(REGEX_PREFIX): |
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| 255 | # allow empty results if filter criteria involve a regex |
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| 256 | return None |
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| 257 | raise FileNotFoundError("File %s not found in METS" % file_id) |
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| 258 | if page_recursive and ocrd_file.mimetype == MIMETYPE_PAGE: |
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| 259 | with pushd_popd(self.directory): |
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| 260 | ocrd_page = parse(self.download_file(ocrd_file).local_filename, silence=True) |
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| 261 | for img_url in ocrd_page.get_AllAlternativeImagePaths(): |
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| 262 | img_kwargs = {'local_filename': img_url} |
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| 263 | if page_same_group: |
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| 264 | img_kwargs['fileGrp'] = ocrd_file.fileGrp |
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| 265 | for img_file in self.mets.find_files(**img_kwargs): |
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| 266 | self.remove_file(img_file, keep_file=keep_file, force=force) |
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| 267 | if not keep_file: |
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| 268 | with pushd_popd(self.directory): |
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| 269 | if not ocrd_file.local_filename: |
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| 270 | if force: |
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| 271 | log.debug("File not locally available but --force is set: %s", ocrd_file) |
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| 272 | else: |
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| 273 | raise Exception("File not locally available %s" % ocrd_file) |
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| 274 | else: |
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| 275 | log.debug("rm %s [cwd=%s]", ocrd_file.local_filename, self.directory) |
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| 276 | unlink(ocrd_file.local_filename) |
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| 277 | # Remove from METS only after the recursion of AlternativeImages |
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| 278 | self.mets.remove_file(file_id) |
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| 279 | return ocrd_file |
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| 280 | except FileNotFoundError as e: |
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| 281 | if not force: |
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| 282 | raise e |
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| 283 | |||
| 284 | def remove_file_group(self, USE, recursive=False, force=False, keep_files=False, page_recursive=False, page_same_group=False): |
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| 285 | """ |
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| 286 | Remove a METS `fileGrp`. |
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| 287 | |||
| 288 | Arguments: |
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| 289 | USE (string): `@USE` of the METS `fileGrp` to delete |
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| 290 | Keyword Args: |
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| 291 | recursive (boolean): Whether to recursively delete all files in the group |
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| 292 | force (boolean): Continue removing even if group or containing files not found in METS |
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| 293 | keep_files (boolean): When deleting recursively whether to keep files on disk |
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| 294 | page_recursive (boolean): Whether to remove all images referenced in the file |
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| 295 | if the file is a PAGE-XML document. |
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| 296 | page_same_group (boolean): Remove only images in the same file group as the PAGE-XML. |
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| 297 | Has no effect unless ``page_recursive`` is `True`. |
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| 298 | """ |
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| 299 | if (not USE.startswith(REGEX_PREFIX)) and (USE not in self.mets.file_groups) and (not force): |
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| 300 | raise Exception("No such fileGrp: %s" % USE) |
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| 301 | |||
| 302 | file_dirs = [] |
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| 303 | if recursive: |
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| 304 | for f in self.mets.find_files(fileGrp=USE): |
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| 305 | self.remove_file(f, force=force, keep_file=keep_files, page_recursive=page_recursive, page_same_group=page_same_group) |
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| 306 | if f.local_filename: |
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| 307 | f_dir = path.dirname(f.local_filename) |
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| 308 | if f_dir: |
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| 309 | file_dirs.append(f_dir) |
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| 310 | |||
| 311 | self.mets.remove_file_group(USE, force=force, recursive=recursive) |
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| 312 | |||
| 313 | # PLEASE NOTE: this only removes directories in the workspace if they are empty |
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| 314 | # and named after the fileGrp which is a convention in OCR-D. |
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| 315 | with pushd_popd(self.directory): |
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| 316 | if Path(USE).is_dir() and not listdir(USE): |
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| 317 | Path(USE).rmdir() |
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| 318 | if file_dirs: |
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| 319 | for file_dir in set(file_dirs): |
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| 320 | if Path(file_dir).is_dir() and not listdir(file_dir): |
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| 321 | Path(file_dir).rmdir() |
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| 322 | |||
| 323 | |||
| 324 | def rename_file_group(self, old, new): |
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| 325 | """ |
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| 326 | Rename a METS `fileGrp`. |
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| 327 | |||
| 328 | Arguments: |
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| 329 | old (string): `@USE` of the METS `fileGrp` to rename |
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| 330 | new (string): `@USE` of the METS `fileGrp` to rename as |
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| 331 | """ |
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| 332 | log = getLogger('ocrd.workspace.rename_file_group') |
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| 333 | |||
| 334 | if old not in self.mets.file_groups: |
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| 335 | raise ValueError(f"No such fileGrp: {old}") |
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| 336 | if new in self.mets.file_groups: |
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| 337 | raise ValueError(f"fileGrp already exists {new}") |
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| 338 | |||
| 339 | with pushd_popd(self.directory): |
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| 340 | # create workspace dir ``new`` |
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| 341 | log.debug("mkdir %s" % new) |
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| 342 | if not Path(new).is_dir(): |
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| 343 | Path(new).mkdir() |
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| 344 | local_filename_replacements = {} |
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| 345 | log.debug("Moving files") |
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| 346 | for mets_file in self.mets.find_files(fileGrp=old, local_only=True): |
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| 347 | new_local_filename = old_local_filename = mets_file.local_filename |
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| 348 | assert new_local_filename |
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| 349 | assert old_local_filename |
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| 350 | # Directory part |
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| 351 | new_local_filename = sub(r'^%s/' % old, r'%s/' % new, new_local_filename) |
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| 352 | # File part |
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| 353 | new_local_filename = sub(r'/%s' % old, r'/%s' % new, new_local_filename) |
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| 354 | local_filename_replacements[str(mets_file.local_filename)] = new_local_filename |
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| 355 | # move file from ``old`` to ``new`` |
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| 356 | Path(old_local_filename).rename(new_local_filename) |
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| 357 | # change the url of ``mets:file`` |
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| 358 | mets_file.local_filename = new_local_filename |
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| 359 | # change the file ID and update structMap |
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| 360 | # change the file ID and update structMap |
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| 361 | new_id = sub(r'^%s' % old, r'%s' % new, mets_file.ID) |
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| 362 | try: |
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| 363 | next(self.mets.find_files(ID=new_id)) |
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| 364 | log.warning("ID %s already exists, not changing ID while renaming %s -> %s" % (new_id, old_local_filename, new_local_filename)) |
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| 365 | except StopIteration: |
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| 366 | mets_file.ID = new_id |
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| 367 | # change file paths in PAGE-XML imageFilename and filename attributes |
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| 368 | for page_file in self.mets.find_files(mimetype=MIMETYPE_PAGE, local_only=True): |
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| 369 | log.debug("Renaming file references in PAGE-XML %s" % page_file) |
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| 370 | pcgts = page_from_file(page_file) |
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| 371 | changed = False |
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| 372 | for old_local_filename, new_local_filename in local_filename_replacements.items(): |
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| 373 | if pcgts.get_Page().imageFilename == old_local_filename: |
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| 374 | changed = True |
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| 375 | log.debug("Rename pc:Page/@imageFilename: %s -> %s" % (old_local_filename, new_local_filename)) |
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| 376 | pcgts.get_Page().imageFilename = new_local_filename |
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| 377 | for ai in pcgts.get_Page().get_AllAlternativeImages(): |
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| 378 | for old_local_filename, new_local_filename in local_filename_replacements.items(): |
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| 379 | if ai.filename == old_local_filename: |
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| 380 | changed = True |
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| 381 | log.debug("Rename pc:Page/../AlternativeImage: %s -> %s" % (old_local_filename, new_local_filename)) |
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| 382 | ai.filename = new_local_filename |
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| 383 | if changed: |
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| 384 | log.debug("PAGE-XML changed, writing %s" % (page_file.local_filename)) |
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| 385 | with open(page_file.local_filename, 'w', encoding='utf-8') as f: |
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| 386 | f.write(to_xml(pcgts)) |
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| 387 | # change the ``USE`` attribute of the fileGrp |
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| 388 | self.mets.rename_file_group(old, new) |
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| 389 | # Remove the old dir |
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| 390 | log.debug("rmdir %s" % old) |
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| 391 | if Path(old).is_dir() and not listdir(old): |
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| 392 | Path(old).rmdir() |
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| 393 | |||
| 394 | @deprecated_alias(pageId="page_id") |
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| 395 | @deprecated_alias(ID="file_id") |
||
| 396 | def add_file(self, file_grp, content=None, **kwargs) -> Union[OcrdFile, ClientSideOcrdFile]: |
||
| 397 | """ |
||
| 398 | Add a file to the :py:class:`ocrd_models.ocrd_mets.OcrdMets` of the workspace. |
||
| 399 | |||
| 400 | Arguments: |
||
| 401 | file_grp (string): `@USE` of the METS `fileGrp` to add to |
||
| 402 | Keyword Args: |
||
| 403 | content (string|bytes): optional content to write to the file |
||
| 404 | in the filesystem |
||
| 405 | **kwargs: See :py:func:`ocrd_models.ocrd_mets.OcrdMets.add_file` |
||
| 406 | Returns: |
||
| 407 | a new :py:class:`ocrd_models.ocrd_file.OcrdFile` |
||
| 408 | """ |
||
| 409 | log = getLogger('ocrd.workspace.add_file') |
||
| 410 | log.debug( |
||
| 411 | 'outputfile file_grp=%s local_filename=%s content=%s', |
||
| 412 | file_grp, |
||
| 413 | kwargs.get('local_filename'), |
||
| 414 | content is not None) |
||
| 415 | if 'page_id' not in kwargs: |
||
| 416 | raise ValueError("workspace.add_file must be passed a 'page_id' kwarg, even if it is None.") |
||
| 417 | if content is not None and not kwargs.get('local_filename'): |
||
| 418 | raise Exception("'content' was set but no 'local_filename'") |
||
| 419 | |||
| 420 | with pushd_popd(self.directory): |
||
| 421 | if kwargs.get('local_filename'): |
||
| 422 | # If the local filename has folder components, create those folders |
||
| 423 | local_filename_dir = str(kwargs['local_filename']).rsplit('/', 1)[0] |
||
| 424 | if local_filename_dir != str(kwargs['local_filename']) and not Path(local_filename_dir).is_dir(): |
||
| 425 | makedirs(local_filename_dir, exist_ok=True) |
||
| 426 | |||
| 427 | # print(kwargs) |
||
| 428 | kwargs["pageId"] = kwargs.pop("page_id") |
||
| 429 | if "file_id" in kwargs: |
||
| 430 | kwargs["ID"] = kwargs.pop("file_id") |
||
| 431 | if config.OCRD_EXISTING_OUTPUT == 'OVERWRITE': |
||
| 432 | kwargs["force"] = True |
||
| 433 | |||
| 434 | ret = self.mets.add_file(file_grp, **kwargs) |
||
| 435 | |||
| 436 | # content being set implies is_remote==False because METS server |
||
| 437 | # does not pass file contents |
||
| 438 | if content is not None: |
||
| 439 | with open(kwargs['local_filename'], 'wb') as f: |
||
| 440 | if isinstance(content, str): |
||
| 441 | content = bytes(content, 'utf-8') |
||
| 442 | f.write(content) |
||
| 443 | |||
| 444 | return ret |
||
| 445 | |||
| 446 | def save_mets(self): |
||
| 447 | """ |
||
| 448 | Write out the current state of the METS file to the filesystem. |
||
| 449 | """ |
||
| 450 | log = getLogger('ocrd.workspace.save_mets') |
||
| 451 | if self.is_remote: |
||
| 452 | self.mets.save() |
||
| 453 | else: |
||
| 454 | log.debug("Saving mets '%s'", self.mets_target) |
||
| 455 | if self.automatic_backup: |
||
| 456 | WorkspaceBackupManager(self).add() |
||
| 457 | with atomic_write(self.mets_target) as f: |
||
| 458 | f.write(self.mets.to_xml(xmllint=True).decode('utf-8')) |
||
| 459 | |||
| 460 | def _apply_mets_file(self, filename_or_url: str, fun: Callable): |
||
| 461 | if not filename_or_url: |
||
| 462 | # avoid "finding" just any file |
||
| 463 | raise ValueError("requires non-empty filename or URL") |
||
| 464 | with pushd_popd(self.directory): |
||
| 465 | if Path(filename_or_url).exists(): |
||
| 466 | return fun(filename_or_url) |
||
| 467 | if image_file := next(self.mets.find_files(local_filename=str(filename_or_url)), None): |
||
| 468 | return fun(image_file.local_filename) |
||
| 469 | if image_file := next(self.mets.find_files(url=str(filename_or_url)), None): |
||
| 470 | return fun(self.download_file(image_file).local_filename) |
||
| 471 | with download_temporary_file(filename_or_url) as f: |
||
| 472 | return fun(f.name) |
||
| 473 | |||
| 474 | def resolve_image_exif(self, image_url): |
||
| 475 | """ |
||
| 476 | Get the EXIF metadata about an image URL as :py:class:`ocrd_models.ocrd_exif.OcrdExif` |
||
| 477 | |||
| 478 | Args: |
||
| 479 | image_url (string) : `@href` (path or URL) of the METS `file` to inspect |
||
| 480 | |||
| 481 | Returns: |
||
| 482 | :py:class:`ocrd_models.ocrd_exif.OcrdExif` |
||
| 483 | """ |
||
| 484 | return self._apply_mets_file(image_url, exif_from_filename) |
||
| 485 | |||
| 486 | @deprecated(version='1.0.0', reason="Use workspace.image_from_page and workspace.image_from_segment") |
||
| 487 | def resolve_image_as_pil(self, image_url, coords=None): |
||
| 488 | """ |
||
| 489 | Resolve an image URL to a `PIL.Image`. |
||
| 490 | |||
| 491 | Arguments: |
||
| 492 | image_url (string): `@href` (path or URL) of the METS `file` to retrieve |
||
| 493 | Keyword Args: |
||
| 494 | coords (list) : Coordinates of the bounding box to cut from the image |
||
| 495 | |||
| 496 | Returns: |
||
| 497 | Full or cropped `PIL.Image` |
||
| 498 | |||
| 499 | """ |
||
| 500 | return self._resolve_image_as_pil(image_url, coords) |
||
| 501 | |||
| 502 | def _resolve_image_as_pil(self, image_url, coords=None): |
||
| 503 | log = getLogger('ocrd.workspace._resolve_image_as_pil') |
||
| 504 | pil_image = self._apply_mets_file(image_url, Image.open) |
||
| 505 | pil_image.load() # alloc and give up the FD |
||
| 506 | |||
| 507 | # Pillow does not properly support higher color depths |
||
| 508 | # (e.g. 16-bit or 32-bit or floating point grayscale), |
||
| 509 | # clipping its dynamic range to the lower 8-bit in |
||
| 510 | # many operations (including paste, putalpha, ImageStat...), |
||
| 511 | # even including conversion. |
||
| 512 | # Cf. Pillow#3011 Pillow#3159 Pillow#3838 (still open in 8.0) |
||
| 513 | # So to be on the safe side, we must re-quantize these |
||
| 514 | # to 8-bit via numpy (conversion to/from which fortunately |
||
| 515 | # seems to work reliably): |
||
| 516 | if (pil_image.mode.startswith('I') or |
||
| 517 | pil_image.mode.startswith('F')): |
||
| 518 | arr_image = np.array(pil_image) |
||
| 519 | if arr_image.dtype.kind == 'i': |
||
| 520 | # signed integer is *not* trustworthy in this context |
||
| 521 | # (usually a mistake in the array interface) |
||
| 522 | log.debug('Casting image "%s" from signed to unsigned', image_url) |
||
| 523 | arr_image.dtype = np.dtype('u' + arr_image.dtype.name) |
||
| 524 | if arr_image.dtype.kind == 'u': |
||
| 525 | # integer needs to be scaled linearly to 8 bit |
||
| 526 | # of course, an image might actually have some lower range |
||
| 527 | # (e.g. 10-bit in I;16 or 20-bit in I or 4-bit in L), |
||
| 528 | # but that would be guessing anyway, so here don't |
||
| 529 | # make assumptions on _scale_, just reduce _precision_ |
||
| 530 | log.debug('Reducing image "%s" from depth %d bit to 8 bit', |
||
| 531 | image_url, arr_image.dtype.itemsize * 8) |
||
| 532 | arr_image = arr_image >> 8 * (arr_image.dtype.itemsize-1) |
||
| 533 | arr_image = arr_image.astype(np.uint8) |
||
| 534 | elif arr_image.dtype.kind == 'f': |
||
| 535 | # float needs to be scaled from [0,1.0] to [0,255] |
||
| 536 | log.debug('Reducing image "%s" from floating point to 8 bit', |
||
| 537 | image_url) |
||
| 538 | arr_image *= 255 |
||
| 539 | arr_image = arr_image.astype(np.uint8) |
||
| 540 | pil_image = Image.fromarray(arr_image) |
||
| 541 | |||
| 542 | if coords is None: |
||
| 543 | return pil_image |
||
| 544 | |||
| 545 | # FIXME: remove or replace this by (image_from_polygon+) crop_image ... |
||
| 546 | log.debug("Converting PIL to OpenCV: %s", image_url) |
||
| 547 | color_conversion = COLOR_GRAY2BGR if pil_image.mode in ('1', 'L') else COLOR_RGB2BGR |
||
| 548 | pil_as_np_array = np.array(pil_image).astype('uint8') if pil_image.mode == '1' else np.array(pil_image) |
||
| 549 | cv2_image = cvtColor(pil_as_np_array, color_conversion) |
||
| 550 | |||
| 551 | poly = np.array(coords, np.int32) |
||
| 552 | log.debug("Cutting region %s from %s", coords, image_url) |
||
| 553 | region_cut = cv2_image[ |
||
| 554 | np.min(poly[:, 1]):np.max(poly[:, 1]), |
||
| 555 | np.min(poly[:, 0]):np.max(poly[:, 0]) |
||
| 556 | ] |
||
| 557 | return Image.fromarray(region_cut) |
||
| 558 | |||
| 559 | def image_from_page(self, page, page_id, |
||
| 560 | fill='background', transparency=False, |
||
| 561 | feature_selector='', feature_filter='', filename=''): |
||
| 562 | """Extract an image for a PAGE-XML page from the workspace. |
||
| 563 | |||
| 564 | Args: |
||
| 565 | page (:py:class:`ocrd_models.ocrd_page.PageType`): a PAGE `PageType` object |
||
| 566 | page_id (string): its `@ID` in the METS physical `structMap` |
||
| 567 | Keyword Args: |
||
| 568 | fill (string): a `PIL` color specifier, or `background` or `none` |
||
| 569 | transparency (boolean): whether to add an alpha channel for masking |
||
| 570 | feature_selector (string): a comma-separated list of `@comments` classes |
||
| 571 | feature_filter (string): a comma-separated list of `@comments` classes |
||
| 572 | filename (string): which file path to use |
||
| 573 | |||
| 574 | Extract a `PIL.Image` from ``page``, either from its `AlternativeImage` |
||
| 575 | (if it exists), or from its `@imageFilename` (otherwise). Also crop it, |
||
| 576 | if a `Border` exists, and rotate it, if any `@orientation` angle is |
||
| 577 | annotated. |
||
| 578 | |||
| 579 | If ``filename`` is given, then among `@imageFilename` and the available |
||
| 580 | `AlternativeImage/@filename` images, pick that one, or raise an error. |
||
| 581 | |||
| 582 | If ``feature_selector`` and/or ``feature_filter`` is given, then |
||
| 583 | among the `@imageFilename` image and the available AlternativeImages, |
||
| 584 | select/filter the richest one which contains all of the selected, |
||
| 585 | but none of the filtered features (i.e. `@comments` classes), or |
||
| 586 | raise an error. |
||
| 587 | |||
| 588 | (Required and produced features need not be in the same order, so |
||
| 589 | ``feature_selector`` is merely a mask specifying Boolean AND, and |
||
| 590 | ``feature_filter`` is merely a mask specifying Boolean OR.) |
||
| 591 | |||
| 592 | If the chosen image does not have the feature `"cropped"` yet, but |
||
| 593 | a `Border` exists, and unless `"cropped"` is being filtered, then crop it. |
||
| 594 | Likewise, if the chosen image does not have the feature `"deskewed"` yet, |
||
| 595 | but an `@orientation` angle is annotated, and unless `"deskewed"` is being |
||
| 596 | filtered, then rotate it. (However, if `@orientation` is above the |
||
| 597 | [-45°,45°] interval, then apply as much transposition as possible first, |
||
| 598 | unless `"rotated-90"` / `"rotated-180"` / `"rotated-270"` is being filtered.) |
||
| 599 | |||
| 600 | Cropping uses a polygon mask (not just the bounding box rectangle). |
||
| 601 | Areas outside the polygon will be filled according to ``fill``: |
||
| 602 | |||
| 603 | - if `"background"` (the default), |
||
| 604 | then fill with the median color of the image; |
||
| 605 | - else if `"none"`, then avoid masking polygons where possible |
||
| 606 | (i.e. when cropping) or revert to the default (i.e. when rotating) |
||
| 607 | - otherwise, use the given color, e.g. `"white"` or `(255,255,255)`. |
||
| 608 | |||
| 609 | Moreover, if ``transparency`` is true, and unless the image already |
||
| 610 | has an alpha channel, then add an alpha channel which is fully opaque |
||
| 611 | before cropping and rotating. (Thus, unexposed/masked areas will be |
||
| 612 | transparent afterwards for consumers that can interpret alpha channels). |
||
| 613 | |||
| 614 | Returns: |
||
| 615 | a tuple of |
||
| 616 | * the extracted `PIL.Image`, |
||
| 617 | * a `dict` with information about the extracted image: |
||
| 618 | |||
| 619 | - `"transform"`: a `Numpy` array with an affine transform which |
||
| 620 | converts from absolute coordinates to those relative to the image, |
||
| 621 | i.e. after cropping to the page's border / bounding box (if any) |
||
| 622 | and deskewing with the page's orientation angle (if any) |
||
| 623 | - `"angle"`: the rotation/reflection angle applied to the image so far, |
||
| 624 | - `"DPI"`: the pixel density of the original image, |
||
| 625 | - `"features"`: the `AlternativeImage` `@comments` for the image, i.e. |
||
| 626 | names of all applied operations that lead up to this result, |
||
| 627 | * an :py:class:`ocrd_models.ocrd_exif.OcrdExif` instance associated with |
||
| 628 | the original image. |
||
| 629 | |||
| 630 | (The first two can be used to annotate a new `AlternativeImage`, |
||
| 631 | or be passed down with :py:meth:`image_from_segment`.) |
||
| 632 | |||
| 633 | Examples: |
||
| 634 | |||
| 635 | * get a raw (colored) but already deskewed and cropped image:: |
||
| 636 | |||
| 637 | page_image, page_coords, page_image_info = workspace.image_from_page( |
||
| 638 | page, page_id, |
||
| 639 | feature_selector='deskewed,cropped', |
||
| 640 | feature_filter='binarized,grayscale_normalized') |
||
| 641 | """ |
||
| 642 | log = getLogger('ocrd.workspace.image_from_page') |
||
| 643 | page_image_info = self.resolve_image_exif(page.imageFilename) |
||
| 644 | page_image = self._resolve_image_as_pil(page.imageFilename) |
||
| 645 | page_coords = {} |
||
| 646 | # use identity as initial affine coordinate transform: |
||
| 647 | page_coords['transform'] = np.eye(3) |
||
| 648 | # interim bbox (updated with each change to the transform): |
||
| 649 | page_bbox = [0, 0, page_image.width, page_image.height] |
||
| 650 | page_xywh = {'x': 0, 'y': 0, |
||
| 651 | 'w': page_image.width, 'h': page_image.height} |
||
| 652 | |||
| 653 | border = page.get_Border() |
||
| 654 | # page angle: PAGE @orientation is defined clockwise, |
||
| 655 | # whereas PIL/ndimage rotation is in mathematical direction: |
||
| 656 | page_coords['angle'] = -(page.get_orientation() or 0) |
||
| 657 | # map angle from (-180,180] to [0,360], and partition into multiples of 90; |
||
| 658 | # but avoid unnecessary large remainders, i.e. split symmetrically: |
||
| 659 | orientation = (page_coords['angle'] + 45) % 360 |
||
| 660 | orientation = orientation - (orientation % 90) |
||
| 661 | skew = (page_coords['angle'] % 360) - orientation |
||
| 662 | skew = 180 - (180 - skew) % 360 # map to [-45,45] |
||
| 663 | page_coords['angle'] = 0 # nothing applied yet (depends on filters) |
||
| 664 | log.debug("page '%s' has %s orientation=%d skew=%.2f", |
||
| 665 | page_id, "border," if border else "", orientation, skew) |
||
| 666 | if page_image_info.resolution != 1: |
||
| 667 | dpi = page_image_info.resolution |
||
| 668 | if page_image_info.resolutionUnit == 'cm': |
||
| 669 | dpi = round(dpi * 2.54) |
||
| 670 | dpi = int(dpi) |
||
| 671 | log.debug("page '%s' images will use %d DPI from image meta-data", page_id, dpi) |
||
| 672 | page_coords['DPI'] = dpi |
||
| 673 | |||
| 674 | # initialize AlternativeImage@comments classes as empty: |
||
| 675 | page_coords['features'] = '' |
||
| 676 | best_image = None |
||
| 677 | alternative_images = page.get_AlternativeImage() |
||
| 678 | if alternative_images: |
||
| 679 | # (e.g. from page-level cropping, binarization, deskewing or despeckling) |
||
| 680 | best_features = set() |
||
| 681 | auto_features = {'cropped', 'deskewed', 'rotated-90', 'rotated-180', 'rotated-270'} |
||
| 682 | # search to the end, because by convention we always append, |
||
| 683 | # and among multiple satisfactory images we want the most recent, |
||
| 684 | # but also ensure that we get the richest feature set, i.e. most |
||
| 685 | # of those features that we cannot reproduce automatically below |
||
| 686 | for alternative_image in alternative_images: |
||
| 687 | if filename and filename != alternative_image.filename: |
||
| 688 | continue |
||
| 689 | features = alternative_image.get_comments() |
||
| 690 | if not features: |
||
| 691 | log.warning("AlternativeImage %d for page '%s' does not have any feature attributes", |
||
| 692 | alternative_images.index(alternative_image) + 1, page_id) |
||
| 693 | features = '' |
||
| 694 | featureset = set(features.split(',')) |
||
| 695 | if (all(feature in featureset |
||
| 696 | for feature in feature_selector.split(',') if feature) and |
||
| 697 | not any(feature in featureset |
||
| 698 | for feature in feature_filter.split(',') if feature) and |
||
| 699 | len(featureset.difference(auto_features)) >= \ |
||
| 700 | len(best_features.difference(auto_features))): |
||
| 701 | best_features = featureset |
||
| 702 | best_image = alternative_image |
||
| 703 | if best_image: |
||
| 704 | log.debug("Using AlternativeImage %d %s for page '%s'", |
||
| 705 | alternative_images.index(best_image) + 1, |
||
| 706 | best_features, page_id) |
||
| 707 | page_image = self._resolve_image_as_pil(best_image.get_filename()) |
||
| 708 | page_coords['features'] = best_image.get_comments() # including duplicates |
||
| 709 | |||
| 710 | # adjust the coord transformation to the steps applied on the image, |
||
| 711 | # and apply steps on the existing image in case it is missing there, |
||
| 712 | # but traverse all steps (crop/reflect/rotate) in a particular order: |
||
| 713 | # - existing image features take priority (in the order annotated), |
||
| 714 | # - next is cropping (if necessary but not already applied), |
||
| 715 | # - next is reflection (if necessary but not already applied), |
||
| 716 | # - next is rotation (if necessary but not already applied). |
||
| 717 | # This helps deal with arbitrary workflows (e.g. crop then deskew, |
||
| 718 | # or deskew then crop), regardless of where images are generated. |
||
| 719 | alternative_image_features = page_coords['features'].split(',') |
||
| 720 | for duplicate_feature in set([feature for feature in alternative_image_features |
||
| 721 | # features relevant in reconstructing coordinates: |
||
| 722 | if (feature in ['cropped', 'deskewed', 'rotated-90', |
||
| 723 | 'rotated-180', 'rotated-270'] and |
||
| 724 | alternative_image_features.count(feature) > 1)]): |
||
| 725 | log.error("Duplicate feature %s in AlternativeImage for page '%s'", |
||
| 726 | duplicate_feature, page_id) |
||
| 727 | for i, feature in enumerate(alternative_image_features + |
||
| 728 | (['cropped'] |
||
| 729 | if (border and |
||
| 730 | not 'cropped' in alternative_image_features and |
||
| 731 | not 'cropped' in feature_filter.split(',')) |
||
| 732 | else []) + |
||
| 733 | (['rotated-%d' % orientation] |
||
| 734 | if (orientation and |
||
| 735 | not 'rotated-%d' % orientation in alternative_image_features and |
||
| 736 | not 'rotated-%d' % orientation in feature_filter.split(',')) |
||
| 737 | else []) + |
||
| 738 | (['deskewed'] |
||
| 739 | if (skew and |
||
| 740 | not 'deskewed' in alternative_image_features and |
||
| 741 | not 'deskewed' in feature_filter.split(',')) |
||
| 742 | else []) + |
||
| 743 | # not a feature to be added, but merely as a fallback position |
||
| 744 | # to always enter loop at i == len(alternative_image_features) |
||
| 745 | ['_check']): |
||
| 746 | # image geometry vs feature consistency can only be checked |
||
| 747 | # after all features on the existing AlternativeImage have |
||
| 748 | # been adjusted for in the transform, and when there is a mismatch, |
||
| 749 | # additional steps applied here would only repeat the respective |
||
| 750 | # error message; so we only check once at the boundary between |
||
| 751 | # existing and new features |
||
| 752 | # FIXME we should check/enforce consistency when _adding_ AlternativeImage |
||
| 753 | if (i == len(alternative_image_features) and |
||
| 754 | not (page_xywh['w'] - 2 < page_image.width < page_xywh['w'] + 2 and |
||
| 755 | page_xywh['h'] - 2 < page_image.height < page_xywh['h'] + 2)): |
||
| 756 | log.error('page "%s" image (%s; %dx%d) has not been cropped properly (%dx%d)', |
||
| 757 | page_id, page_coords['features'], |
||
| 758 | page_image.width, page_image.height, |
||
| 759 | page_xywh['w'], page_xywh['h']) |
||
| 760 | name = "%s for page '%s'" % ("AlternativeImage" if best_image |
||
| 761 | else "original image", page_id) |
||
| 762 | # adjust transform to feature, and ensure feature is applied to image |
||
| 763 | if feature == 'cropped': |
||
| 764 | page_image, page_coords, page_xywh = _crop( |
||
| 765 | log, name, border, page_image, page_coords, |
||
| 766 | fill=fill, transparency=transparency) |
||
| 767 | elif feature == 'rotated-%d' % orientation: |
||
| 768 | page_image, page_coords, page_xywh = _reflect( |
||
| 769 | log, name, orientation, page_image, page_coords, page_xywh) |
||
| 770 | elif feature == 'deskewed': |
||
| 771 | page_image, page_coords, page_xywh = _rotate( |
||
| 772 | log, name, skew, border, page_image, page_coords, page_xywh, |
||
| 773 | fill=fill, transparency=transparency) |
||
| 774 | |||
| 775 | # verify constraints again: |
||
| 776 | if filename and not getattr(page_image, 'filename', '').endswith(filename): |
||
| 777 | raise Exception('Found no AlternativeImage that satisfies all requirements ' + |
||
| 778 | 'filename="%s" in page "%s"' % ( |
||
| 779 | filename, page_id)) |
||
| 780 | if not all(feature in page_coords['features'] |
||
| 781 | for feature in feature_selector.split(',') if feature): |
||
| 782 | raise Exception('Found no AlternativeImage that satisfies all requirements ' + |
||
| 783 | 'selector="%s" in page "%s"' % ( |
||
| 784 | feature_selector, page_id)) |
||
| 785 | if any(feature in page_coords['features'] |
||
| 786 | for feature in feature_filter.split(',') if feature): |
||
| 787 | raise Exception('Found no AlternativeImage that satisfies all requirements ' + |
||
| 788 | 'filter="%s" in page "%s"' % ( |
||
| 789 | feature_filter, page_id)) |
||
| 790 | # ensure DPI will be set in image meta-data again |
||
| 791 | if 'DPI' in page_coords: |
||
| 792 | dpi = page_coords['DPI'] |
||
| 793 | if 'dpi' not in page_image.info: |
||
| 794 | page_image.info['dpi'] = (dpi, dpi) |
||
| 795 | return page_image, page_coords, page_image_info |
||
| 796 | |||
| 797 | def image_from_segment(self, segment, parent_image, parent_coords, |
||
| 798 | fill='background', transparency=False, |
||
| 799 | feature_selector='', feature_filter='', filename=''): |
||
| 800 | """Extract an image for a PAGE-XML hierarchy segment from its parent's image. |
||
| 801 | |||
| 802 | Args: |
||
| 803 | segment (object): a PAGE segment object \ |
||
| 804 | (i.e. :py:class:`~ocrd_models.ocrd_page.TextRegionType` \ |
||
| 805 | or :py:class:`~ocrd_models.ocrd_page.TextLineType` \ |
||
| 806 | or :py:class:`~ocrd_models.ocrd_page.WordType` \ |
||
| 807 | or :py:class:`~ocrd_models.ocrd_page.GlyphType`) |
||
| 808 | parent_image (`PIL.Image`): image of the `segment`'s parent |
||
| 809 | parent_coords (dict): a `dict` with information about `parent_image`: |
||
| 810 | |||
| 811 | - `"transform"`: a `Numpy` array with an affine transform which |
||
| 812 | converts from absolute coordinates to those relative to the image, |
||
| 813 | i.e. after applying all operations (starting with the original image) |
||
| 814 | - `"angle"`: the rotation/reflection angle applied to the image so far, |
||
| 815 | - `"DPI"`: the pixel density of the parent image, |
||
| 816 | - `"features"`: the ``AlternativeImage/@comments`` for the image, i.e. |
||
| 817 | names of all operations that lead up to this result, and |
||
| 818 | Keyword Args: |
||
| 819 | fill (string): a `PIL` color specifier, or `background` or `none` |
||
| 820 | transparency (boolean): whether to add an alpha channel for masking |
||
| 821 | feature_selector (string): a comma-separated list of ``@comments`` classes |
||
| 822 | feature_filter (string): a comma-separated list of ``@comments`` classes |
||
| 823 | |||
| 824 | Extract a `PIL.Image` from `segment`, either from ``AlternativeImage`` |
||
| 825 | (if it exists), or producing a new image via cropping from `parent_image` |
||
| 826 | (otherwise). Pass in `parent_image` and `parent_coords` from the result |
||
| 827 | of the next higher-level of this function or from :py:meth:`image_from_page`. |
||
| 828 | |||
| 829 | If ``filename`` is given, then among the available `AlternativeImage/@filename` |
||
| 830 | images, pick that one, or raise an error. |
||
| 831 | |||
| 832 | If ``feature_selector`` and/or ``feature_filter`` is given, then |
||
| 833 | among the cropped `parent_image` and the available AlternativeImages, |
||
| 834 | select/filter the richest one which contains all of the selected, |
||
| 835 | but none of the filtered features (i.e. ``@comments`` classes), or |
||
| 836 | raise an error. |
||
| 837 | |||
| 838 | (Required and produced features need not be in the same order, so |
||
| 839 | `feature_selector` is merely a mask specifying Boolean AND, and |
||
| 840 | `feature_filter` is merely a mask specifying Boolean OR.) |
||
| 841 | |||
| 842 | Cropping uses a polygon mask (not just the bounding box rectangle). |
||
| 843 | Areas outside the polygon will be filled according to `fill`: |
||
| 844 | |||
| 845 | - if `"background"` (the default), |
||
| 846 | then fill with the median color of the image; |
||
| 847 | - else if `"none"`, then avoid masking polygons where possible |
||
| 848 | (i.e. when cropping) or revert to the default (i.e. when rotating) |
||
| 849 | - otherwise, use the given color, e.g. `"white"` or `(255,255,255)`. |
||
| 850 | |||
| 851 | Moreover, if `transparency` is true, and unless the image already |
||
| 852 | has an alpha channel, then add an alpha channel which is fully opaque |
||
| 853 | before cropping and rotating. (Thus, unexposed/masked areas will be |
||
| 854 | transparent afterwards for consumers that can interpret alpha channels). |
||
| 855 | |||
| 856 | When cropping, compensate any ``@orientation`` angle annotated for the |
||
| 857 | parent (from parent-level deskewing) by rotating the segment coordinates |
||
| 858 | in an inverse transformation (i.e. translation to center, then passive |
||
| 859 | rotation, and translation back). |
||
| 860 | |||
| 861 | Regardless, if any ``@orientation`` angle is annotated for the segment |
||
| 862 | (from segment-level deskewing), and the chosen image does not have |
||
| 863 | the feature `"deskewed"` yet, and unless `"deskewed"` is being filtered, |
||
| 864 | then rotate it - compensating for any previous `"angle"`. (However, |
||
| 865 | if ``@orientation`` is above the [-45°,45°] interval, then apply as much |
||
| 866 | transposition as possible first, unless `"rotated-90"` / `"rotated-180"` / |
||
| 867 | `"rotated-270"` is being filtered.) |
||
| 868 | |||
| 869 | Returns: |
||
| 870 | a tuple of |
||
| 871 | * the extracted `PIL.Image`, |
||
| 872 | * a `dict` with information about the extracted image: |
||
| 873 | |||
| 874 | - `"transform"`: a `Numpy` array with an affine transform which |
||
| 875 | converts from absolute coordinates to those relative to the image, |
||
| 876 | i.e. after applying all parent operations, and then cropping to |
||
| 877 | the segment's bounding box, and deskewing with the segment's |
||
| 878 | orientation angle (if any) |
||
| 879 | - `"angle"`: the rotation/reflection angle applied to the image so far, |
||
| 880 | - `"DPI"`: the pixel density of this image, |
||
| 881 | - `"features"`: the ``AlternativeImage/@comments`` for the image, i.e. |
||
| 882 | names of all applied operations that lead up to this result. |
||
| 883 | |||
| 884 | (These can be used to create a new ``AlternativeImage``, or passed down |
||
| 885 | for :py:meth:`image_from_segment` calls on lower hierarchy levels.) |
||
| 886 | |||
| 887 | Examples: |
||
| 888 | |||
| 889 | * get a raw (colored) but already deskewed and cropped image:: |
||
| 890 | |||
| 891 | image, xywh = workspace.image_from_segment(region, |
||
| 892 | page_image, page_xywh, |
||
| 893 | feature_selector='deskewed,cropped', |
||
| 894 | feature_filter='binarized,grayscale_normalized') |
||
| 895 | """ |
||
| 896 | log = getLogger('ocrd.workspace.image_from_segment') |
||
| 897 | # note: We should mask overlapping neighbouring segments here, |
||
| 898 | # but finding the right clipping rules can be difficult if operating |
||
| 899 | # on the raw (non-binary) image data alone: for each intersection, it |
||
| 900 | # must be decided which one of either segment or neighbour to assign, |
||
| 901 | # e.g. an ImageRegion which properly contains our TextRegion should be |
||
| 902 | # completely ignored, but an ImageRegion which is properly contained |
||
| 903 | # in our TextRegion should be completely masked, while partial overlap |
||
| 904 | # may be more difficult to decide. On the other hand, on the binary image, |
||
| 905 | # we can use connected component analysis to mask foreground areas which |
||
| 906 | # originate in the neighbouring regions. But that would introduce either |
||
| 907 | # the assumption that the input has already been binarized, or a dependency |
||
| 908 | # on some ad-hoc binarization method. Thus, it is preferable to use |
||
| 909 | # a dedicated processor for this (which produces clipped AlternativeImage |
||
| 910 | # or reduced polygon coordinates). |
||
| 911 | segment_image, segment_coords, segment_xywh = _crop( |
||
| 912 | log, "parent image for segment '%s'" % segment.id, |
||
| 913 | segment, parent_image, parent_coords, |
||
| 914 | fill=fill, transparency=transparency) |
||
| 915 | |||
| 916 | # Semantics of missing @orientation at region level could be either |
||
| 917 | # - inherited from page level: same as line or word level (no @orientation), |
||
| 918 | # - zero (unrotate page angle): different from line or word level (because |
||
| 919 | # otherwise deskewing would never have an effect on lines and words) |
||
| 920 | # The PAGE specification is silent here (but does generally not concern itself |
||
| 921 | # much with AlternativeImage coordinate consistency). |
||
| 922 | # Since our (generateDS-backed) ocrd_page supports the zero/none distinction, |
||
| 923 | # we choose the former (i.e. None is inheritance). |
||
| 924 | if 'orientation' in segment.__dict__ and segment.get_orientation() is not None: |
||
| 925 | # region angle: PAGE @orientation is defined clockwise, |
||
| 926 | # whereas PIL/ndimage rotation is in mathematical direction: |
||
| 927 | angle = -segment.get_orientation() |
||
| 928 | # @orientation is always absolute; if higher levels |
||
| 929 | # have already rotated, then we must compensate: |
||
| 930 | angle -= parent_coords['angle'] |
||
| 931 | # map angle from (-180,180] to [0,360], and partition into multiples of 90; |
||
| 932 | # but avoid unnecessary large remainders, i.e. split symmetrically: |
||
| 933 | orientation = (angle + 45) % 360 |
||
| 934 | orientation = orientation - (orientation % 90) |
||
| 935 | skew = (angle % 360) - orientation |
||
| 936 | skew = 180 - (180 - skew) % 360 # map to [-45,45] |
||
| 937 | log.debug("segment '%s' has orientation=%d skew=%.2f", |
||
| 938 | segment.id, orientation, skew) |
||
| 939 | else: |
||
| 940 | orientation = 0 |
||
| 941 | skew = 0 |
||
| 942 | segment_coords['angle'] = parent_coords['angle'] # nothing applied yet (depends on filters) |
||
| 943 | if 'DPI' in parent_coords: |
||
| 944 | segment_coords['DPI'] = parent_coords['DPI'] # not rescaled yet |
||
| 945 | |||
| 946 | # initialize AlternativeImage@comments classes from parent, except |
||
| 947 | # for those operations that can apply on multiple hierarchy levels: |
||
| 948 | segment_coords['features'] = ','.join( |
||
| 949 | [feature for feature in parent_coords['features'].split(',') |
||
| 950 | if feature in ['binarized', 'grayscale_normalized', |
||
| 951 | 'despeckled', 'dewarped']]) |
||
| 952 | |||
| 953 | best_image = None |
||
| 954 | alternative_images = segment.get_AlternativeImage() |
||
| 955 | if alternative_images: |
||
| 956 | # (e.g. from segment-level cropping, binarization, deskewing or despeckling) |
||
| 957 | best_features = set() |
||
| 958 | auto_features = {'cropped', 'deskewed', 'rotated-90', 'rotated-180', 'rotated-270'} |
||
| 959 | # search to the end, because by convention we always append, |
||
| 960 | # and among multiple satisfactory images we want the most recent, |
||
| 961 | # but also ensure that we get the richest feature set, i.e. most |
||
| 962 | # of those features that we cannot reproduce automatically below |
||
| 963 | for alternative_image in alternative_images: |
||
| 964 | if filename and filename != alternative_image.filename: |
||
| 965 | continue |
||
| 966 | features = alternative_image.get_comments() |
||
| 967 | if not features: |
||
| 968 | log.warning("AlternativeImage %d for segment '%s' does not have any feature attributes", |
||
| 969 | alternative_images.index(alternative_image) + 1, segment.id) |
||
| 970 | features = '' |
||
| 971 | featureset = set(features.split(',')) |
||
| 972 | if (all(feature in featureset |
||
| 973 | for feature in feature_selector.split(',') if feature) and |
||
| 974 | not any(feature in featureset |
||
| 975 | for feature in feature_filter.split(',') if feature) and |
||
| 976 | len(featureset.difference(auto_features)) >= \ |
||
| 977 | len(best_features.difference(auto_features))): |
||
| 978 | best_features = featureset |
||
| 979 | best_image = alternative_image |
||
| 980 | if best_image: |
||
| 981 | log.debug("Using AlternativeImage %d %s for segment '%s'", |
||
| 982 | alternative_images.index(best_image) + 1, |
||
| 983 | best_features, segment.id) |
||
| 984 | segment_image = self._resolve_image_as_pil(alternative_image.get_filename()) |
||
| 985 | segment_coords['features'] = best_image.get_comments() # including duplicates |
||
| 986 | |||
| 987 | alternative_image_features = segment_coords['features'].split(',') |
||
| 988 | for duplicate_feature in set([feature for feature in alternative_image_features |
||
| 989 | # features relevant in reconstructing coordinates: |
||
| 990 | if (feature in ['deskewed', 'rotated-90', |
||
| 991 | 'rotated-180', 'rotated-270'] and |
||
| 992 | alternative_image_features.count(feature) > 1)]): |
||
| 993 | log.error("Duplicate feature %s in AlternativeImage for segment '%s'", |
||
| 994 | duplicate_feature, segment.id) |
||
| 995 | for i, feature in enumerate(alternative_image_features + |
||
| 996 | (['rotated-%d' % orientation] |
||
| 997 | if (orientation and |
||
| 998 | not 'rotated-%d' % orientation in alternative_image_features and |
||
| 999 | not 'rotated-%d' % orientation in feature_filter.split(',')) |
||
| 1000 | else []) + |
||
| 1001 | (['deskewed'] |
||
| 1002 | if (skew and |
||
| 1003 | not 'deskewed' in alternative_image_features and |
||
| 1004 | not 'deskewed' in feature_filter.split(',')) |
||
| 1005 | else []) + |
||
| 1006 | # not a feature to be added, but merely as a fallback position |
||
| 1007 | # to always enter loop at i == len(alternative_image_features) |
||
| 1008 | ['_check']): |
||
| 1009 | # image geometry vs feature consistency can only be checked |
||
| 1010 | # after all features on the existing AlternativeImage have |
||
| 1011 | # been adjusted for in the transform, and when there is a mismatch, |
||
| 1012 | # additional steps applied here would only repeat the respective |
||
| 1013 | # error message; so we only check once at the boundary between |
||
| 1014 | # existing and new features |
||
| 1015 | # FIXME we should enforce consistency here (i.e. split into transposition |
||
| 1016 | # and minimal rotation, rotation always reshapes, rescaling never happens) |
||
| 1017 | # FIXME: inconsistency currently unavoidable with line-level dewarping (which increases height) |
||
| 1018 | if (i == len(alternative_image_features) and |
||
| 1019 | not (segment_xywh['w'] - 2 < segment_image.width < segment_xywh['w'] + 2 and |
||
| 1020 | segment_xywh['h'] - 2 < segment_image.height < segment_xywh['h'] + 2)): |
||
| 1021 | log.error('segment "%s" image (%s; %dx%d) has not been cropped properly (%dx%d)', |
||
| 1022 | segment.id, segment_coords['features'], |
||
| 1023 | segment_image.width, segment_image.height, |
||
| 1024 | segment_xywh['w'], segment_xywh['h']) |
||
| 1025 | name = "%s for segment '%s'" % ("AlternativeImage" if best_image |
||
| 1026 | else "parent image", segment.id) |
||
| 1027 | # adjust transform to feature, and ensure feature is applied to image |
||
| 1028 | if feature == 'rotated-%d' % orientation: |
||
| 1029 | segment_image, segment_coords, segment_xywh = _reflect( |
||
| 1030 | log, name, orientation, segment_image, segment_coords, segment_xywh) |
||
| 1031 | elif feature == 'deskewed': |
||
| 1032 | segment_image, segment_coords, segment_xywh = _rotate( |
||
| 1033 | log, name, skew, segment, segment_image, segment_coords, segment_xywh, |
||
| 1034 | fill=fill, transparency=transparency) |
||
| 1035 | |||
| 1036 | # verify constraints again: |
||
| 1037 | if filename and not getattr(segment_image, 'filename', '').endswith(filename): |
||
| 1038 | raise Exception('Found no AlternativeImage that satisfies all requirements ' + |
||
| 1039 | 'filename="%s" in segment "%s"' % ( |
||
| 1040 | filename, segment.id)) |
||
| 1041 | if not all(feature in segment_coords['features'] |
||
| 1042 | for feature in feature_selector.split(',') if feature): |
||
| 1043 | raise Exception('Found no AlternativeImage that satisfies all requirements' + |
||
| 1044 | 'selector="%s" in segment "%s"' % ( |
||
| 1045 | feature_selector, segment.id)) |
||
| 1046 | if any(feature in segment_coords['features'] |
||
| 1047 | for feature in feature_filter.split(',') if feature): |
||
| 1048 | raise Exception('Found no AlternativeImage that satisfies all requirements ' + |
||
| 1049 | 'filter="%s" in segment "%s"' % ( |
||
| 1050 | feature_filter, segment.id)) |
||
| 1051 | # ensure DPI will be set in image meta-data again |
||
| 1052 | if 'DPI' in segment_coords: |
||
| 1053 | dpi = segment_coords['DPI'] |
||
| 1054 | if 'dpi' not in segment_image.info: |
||
| 1055 | segment_image.info['dpi'] = (dpi, dpi) |
||
| 1056 | return segment_image, segment_coords |
||
| 1057 | |||
| 1058 | # pylint: disable=redefined-builtin |
||
| 1059 | def save_image_file(self, image : Image.Image, |
||
| 1060 | file_id : str, |
||
| 1061 | file_grp : str, |
||
| 1062 | file_path : Optional[str] = None, |
||
| 1063 | page_id : Optional[str] = None, |
||
| 1064 | mimetype : str = 'image/png', |
||
| 1065 | force : bool = False) -> str: |
||
| 1066 | """Store an image in the filesystem and reference it as new file in the METS. |
||
| 1067 | |||
| 1068 | Args: |
||
| 1069 | image (PIL.Image): derived image to save |
||
| 1070 | file_id (string): `@ID` of the METS `file` to use |
||
| 1071 | file_grp (string): `@USE` of the METS `fileGrp` to use |
||
| 1072 | Keyword Args: |
||
| 1073 | file_path (string): `@href` of the METS `file/FLocat` to use. |
||
| 1074 | page_id (string): `@ID` in the METS physical `structMap` to use |
||
| 1075 | mimetype (string): MIME type of the image format to serialize as |
||
| 1076 | force (boolean): whether to replace any existing `file` with that `@ID` |
||
| 1077 | |||
| 1078 | Serialize the image into the filesystem, and add a `file` for it in the METS. |
||
| 1079 | Use ``file_grp`` as directory and ``file_id`` concatenated with extension |
||
| 1080 | based on ``mimetype`` as file name, unless directly passing ``file_path``. |
||
| 1081 | |||
| 1082 | Returns: |
||
| 1083 | The (absolute) path of the created file. |
||
| 1084 | """ |
||
| 1085 | log = getLogger('ocrd.workspace.save_image_file') |
||
| 1086 | saveargs = {} |
||
| 1087 | if 'dpi' in image.info: |
||
| 1088 | saveargs['dpi'] = image.info['dpi'] |
||
| 1089 | image_bytes = io.BytesIO() |
||
| 1090 | image.save(image_bytes, format=MIME_TO_PIL[mimetype], **saveargs) |
||
| 1091 | if file_path is None: |
||
| 1092 | file_path = str(Path(file_grp, '%s%s' % (file_id, MIME_TO_EXT[mimetype]))) |
||
| 1093 | out = self.add_file( |
||
| 1094 | file_grp, |
||
| 1095 | file_id=file_id, |
||
| 1096 | page_id=page_id, |
||
| 1097 | local_filename=file_path, |
||
| 1098 | mimetype=mimetype, |
||
| 1099 | content=image_bytes.getvalue(), |
||
| 1100 | force=force) |
||
| 1101 | log.info('created file ID: %s, file_grp: %s, path: %s', |
||
| 1102 | file_id, file_grp, out.local_filename) |
||
| 1103 | return file_path |
||
| 1104 | |||
| 1105 | def find_files(self, *args, **kwargs): |
||
| 1106 | """ |
||
| 1107 | Search ``mets:file`` entries in wrapped METS document and yield results. |
||
| 1108 | |||
| 1109 | Delegator to :py:func:`ocrd_models.ocrd_mets.OcrdMets.find_files` |
||
| 1110 | |||
| 1111 | Keyword Args: |
||
| 1112 | **kwargs: See :py:func:`ocrd_models.ocrd_mets.OcrdMets.find_files` |
||
| 1113 | Returns: |
||
| 1114 | Generator which yields :py:class:`ocrd_models:ocrd_file:OcrdFile` instantiations |
||
| 1115 | """ |
||
| 1116 | log = getLogger('ocrd.workspace.find_files') |
||
| 1117 | log.debug('find files in mets. kwargs=%s' % kwargs) |
||
| 1118 | if "page_id" in kwargs: |
||
| 1119 | kwargs["pageId"] = kwargs.pop("page_id") |
||
| 1120 | if "file_id" in kwargs: |
||
| 1121 | kwargs["ID"] = kwargs.pop("file_id") |
||
| 1122 | if "file_grp" in kwargs: |
||
| 1123 | kwargs["fileGrp"] = kwargs.pop("file_grp") |
||
| 1124 | with pushd_popd(self.directory): |
||
| 1125 | return self.mets.find_files(*args, **kwargs) |
||
| 1126 | |||
| 1127 | def _crop(log, name, segment, parent_image, parent_coords, op='cropped', **kwargs): |
||
| 1128 | segment_coords = parent_coords.copy() |
||
| 1129 | # get polygon outline of segment relative to parent image: |
||
| 1130 | segment_polygon = coordinates_of_segment(segment, parent_image, parent_coords) |
||
| 1131 | # get relative bounding box: |
||
| 1132 | segment_bbox = bbox_from_polygon(segment_polygon) |
||
| 1133 | # get size of the segment in the parent image after cropping |
||
| 1134 | # (i.e. possibly different from size before rotation at the parent, but |
||
| 1135 | # also possibly different from size after rotation below/AlternativeImage): |
||
| 1136 | segment_xywh = xywh_from_bbox(*segment_bbox) |
||
| 1137 | # crop, if (still) necessary: |
||
| 1138 | if (not isinstance(segment, BorderType) or # always crop below page level |
||
| 1139 | not op in parent_coords['features']): |
||
| 1140 | if op == 'recropped': |
||
| 1141 | log.debug("Recropping %s", name) |
||
| 1142 | elif isinstance(segment, BorderType): |
||
| 1143 | log.debug("Cropping %s", name) |
||
| 1144 | segment_coords['features'] += ',' + op |
||
| 1145 | # create a mask from the segment polygon: |
||
| 1146 | segment_image = image_from_polygon(parent_image, segment_polygon, **kwargs) |
||
| 1147 | # crop to bbox: |
||
| 1148 | segment_image = crop_image(segment_image, box=segment_bbox) |
||
| 1149 | else: |
||
| 1150 | segment_image = parent_image |
||
| 1151 | # subtract offset from parent in affine coordinate transform: |
||
| 1152 | # (consistent with image cropping) |
||
| 1153 | segment_coords['transform'] = shift_coordinates( |
||
| 1154 | parent_coords['transform'], |
||
| 1155 | np.array([-segment_bbox[0], |
||
| 1156 | -segment_bbox[1]])) |
||
| 1157 | return segment_image, segment_coords, segment_xywh |
||
| 1158 | |||
| 1159 | def _reflect(log, name, orientation, segment_image, segment_coords, segment_xywh): |
||
| 1160 | # Transpose in affine coordinate transform: |
||
| 1161 | # (consistent with image transposition or AlternativeImage below) |
||
| 1162 | transposition = { |
||
| 1163 | 90: Image.Transpose.ROTATE_90, |
||
| 1164 | 180: Image.Transpose.ROTATE_180, |
||
| 1165 | 270: Image.Transpose.ROTATE_270 |
||
| 1166 | }.get(orientation) # no default |
||
| 1167 | segment_coords['transform'] = transpose_coordinates( |
||
| 1168 | segment_coords['transform'], transposition, |
||
| 1169 | np.array([0.5 * segment_xywh['w'], |
||
| 1170 | 0.5 * segment_xywh['h']])) |
||
| 1171 | segment_xywh['w'], segment_xywh['h'] = adjust_canvas_to_transposition( |
||
| 1172 | [segment_xywh['w'], segment_xywh['h']], transposition) |
||
| 1173 | segment_coords['angle'] += orientation |
||
| 1174 | # transpose, if (still) necessary: |
||
| 1175 | if not 'rotated-%d' % orientation in segment_coords['features']: |
||
| 1176 | log.debug("Transposing %s by %d°", name, orientation) |
||
| 1177 | segment_image = transpose_image(segment_image, transposition) |
||
| 1178 | segment_coords['features'] += ',rotated-%d' % orientation |
||
| 1179 | return segment_image, segment_coords, segment_xywh |
||
| 1180 | |||
| 1181 | def _rotate(log, name, skew, segment, segment_image, segment_coords, segment_xywh, **kwargs): |
||
| 1182 | # Rotate around center in affine coordinate transform: |
||
| 1183 | # (consistent with image rotation or AlternativeImage below) |
||
| 1184 | segment_coords['transform'] = rotate_coordinates( |
||
| 1185 | segment_coords['transform'], skew, |
||
| 1186 | np.array([0.5 * segment_xywh['w'], |
||
| 1187 | 0.5 * segment_xywh['h']])) |
||
| 1188 | segment_xywh['w'], segment_xywh['h'] = adjust_canvas_to_rotation( |
||
| 1189 | [segment_xywh['w'], segment_xywh['h']], skew) |
||
| 1190 | segment_coords['angle'] += skew |
||
| 1191 | # deskew, if (still) necessary: |
||
| 1192 | if not 'deskewed' in segment_coords['features']: |
||
| 1193 | log.debug("Rotating %s by %.2f°", name, skew) |
||
| 1194 | segment_image = rotate_image(segment_image, skew, **kwargs) |
||
| 1195 | segment_coords['features'] += ',deskewed' |
||
| 1196 | if (segment and |
||
| 1197 | (not isinstance(segment, BorderType) or # always crop below page level |
||
| 1198 | 'cropped' in segment_coords['features'])): |
||
| 1199 | # re-crop to new bbox (which may deviate |
||
| 1200 | # if segment polygon was not a rectangle) |
||
| 1201 | segment_image, segment_coords, segment_xywh = _crop( |
||
| 1202 | log, name, segment, segment_image, segment_coords, |
||
| 1203 | op='recropped', **kwargs) |
||
| 1204 | elif (segment and |
||
| 1205 | (not isinstance(segment, BorderType) or # always crop below page level |
||
| 1206 | 'cropped' in segment_coords['features'])): |
||
| 1207 | # only shift coordinates as if re-cropping |
||
| 1208 | segment_polygon = coordinates_of_segment(segment, segment_image, segment_coords) |
||
| 1209 | segment_bbox = bbox_from_polygon(segment_polygon) |
||
| 1210 | segment_xywh = xywh_from_bbox(*segment_bbox) |
||
| 1211 | segment_coords['transform'] = shift_coordinates( |
||
| 1212 | segment_coords['transform'], |
||
| 1213 | np.array([-segment_bbox[0], |
||
| 1214 | -segment_bbox[1]])) |
||
| 1215 | return segment_image, segment_coords, segment_xywh |
||
| 1216 | |||
| 1217 | def _scale(log, name, factor, segment_image, segment_coords, segment_xywh, **kwargs): |
||
| 1218 | # Resize linearly |
||
| 1219 | segment_coords['transform'] = scale_coordinates( |
||
| 1220 | segment_coords['transform'], [factor, factor]) |
||
| 1221 | segment_coords['scale'] = segment_coords.setdefault('scale', 1.0) * factor |
||
| 1222 | segment_xywh['w'] *= factor |
||
| 1223 | segment_xywh['h'] *= factor |
||
| 1224 | # resize, if (still) necessary |
||
| 1225 | if not 'scaled' in segment_coords['features']: |
||
| 1226 | log.debug("Scaling %s by %.2f", name, factor) |
||
| 1227 | segment_coords['features'] += ',scaled' |
||
| 1228 | # FIXME: validate factor against PAGE-XML attributes |
||
| 1229 | # FIXME: factor should become less precise due to rounding |
||
| 1230 | segment_image = segment_image.resize((int(segment_image.width * factor), |
||
| 1231 | int(segment_image.height * factor)), |
||
| 1232 | # slowest, but highest quality: |
||
| 1233 | Image.Resampling.BICUBIC) |
||
| 1234 | return segment_image, segment_coords, segment_xywh |
||
| 1235 |