Runner.only_upper() - Code Metrics - Inspection of "fix latex export" - NiaOrg/NiaPy - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Pull Request — master (#41)

by Grega

created 2018-02-16 13:22 UTC

Runner.only_upper() A

↳ Parent: Runner.__exportToLatex()

Complexity

Conditions

Size

Total Lines

Duplication

Lines	0
Ratio	0 %

Importance

Changes	1
Bugs	1	Features	0

Metric	Value
cc	3
c	1
b	1
f	0
dl	0
loc	2
rs	10

from __future__ import print_function  # for backward compatibility purpose

import os
import logging
import json
import datetime
import xlsxwriter
import numpy as np
from NiaPy import algorithms, benchmarks

__all__ = ['algorithms', 'benchmarks']
__project__ = 'NiaPy'
__version__ = '0.0.0'

VERSION = "{0} v{1}".format(__project__, __version__)

logging.basicConfig()
logger = logging.getLogger('NiaPy')
logger.setLevel('INFO')


class Runner(object):
    # pylint: disable=too-many-instance-attributes, too-many-locals
    def __init__(self, D, NP, nFES, nRuns, useAlgorithms, useBenchmarks,
                 A=0.5, r=0.5, Qmin=0.0, Qmax=2.0, F=0.5, CR=0.9, alpha=0.5,
                 betamin=0.2, gamma=1.0, p=0.5):
        self.D = D
        self.NP = NP
        self.nFES = nFES
        self.nRuns = nRuns
        self.useAlgorithms = useAlgorithms
        self.useBenchmarks = useBenchmarks
        self.A = A
        self.r = r
        self.Qmin = Qmin
        self.Qmax = Qmax
        self.F = F
        self.CR = CR
        self.alpha = alpha
        self.betamin = betamin
        self.gamma = gamma
        self.p = p
        self.results = {}

    def __algorithmFactory(self, name, benchmark):
        bench = benchmarks.utility.Utility().get_benchmark(benchmark)
        algorithm = None

        if name == 'BatAlgorithm':
            algorithm = algorithms.basic.BatAlgorithm(
                self.D, self.NP, self.nFES, self.A, self.r, self.Qmin, self.Qmax, bench)
        elif name == 'DifferentialEvolutionAlgorithm':
            algorithm = algorithms.basic.DifferentialEvolutionAlgorithm(
                self.D, self.NP, self.nFES, self.F, self.CR, bench)
        elif name == 'FireflyAlgorithm':
            algorithm = algorithms.basic.FireflyAlgorithm(
                self.D, self.NP, self.nFES, self.alpha, self.betamin, self.gamma, bench)
        elif name == 'FlowerPollinationAlgorithm':
            algorithm = algorithms.basic.FlowerPollinationAlgorithm(
                self.D, self.NP, self.nFES, self.p, bench)
        elif name == 'GreyWolfOptimizer':
            algorithm = algorithms.basic.GreyWolfOptimizer(
                self.D, self.NP, self.nFES, bench)
        elif name == 'ArtificialBeeColonyAlgorithm':
            algorithm = algorithms.basic.ArtificialBeeColonyAlgorithm(self.D, self.NP, self.nFES, bench)
        elif name == 'HybridBatAlgorithm':
            algorithm = algorithms.modified.HybridBatAlgorithm(
                self.D, self.NP, self.nFES, self.A, self.r, self.F, self.CR, self.Qmin, self.Qmax, bench)
        else:
            raise TypeError('Passed benchmark is not defined!')

        return algorithm

    @classmethod
    def __createExportDir(cls):
        if not os.path.exists('export'):
            os.makedirs('export')

    @classmethod
    def __generateExportName(cls, extension):
        return 'export/' + str(datetime.datetime.now()) + '.' + extension

    def __exportToLog(self):
        print(self.results)

    def __exportToJson(self):
        self.__createExportDir()
        with open(self.__generateExportName('json'), 'w') as outFile:
            json.dump(self.results, outFile)
            logger.info('Export to JSON completed!')

    def __exportToXls(self):
        workbook = xlsxwriter.Workbook(self.__generateExportName('xlsx'))
        worksheet = workbook.add_worksheet()

        row = 0
        col = 0
        nRuns = 0

        for alg in self.results:
            worksheet.write(row, col, alg)
            col += 1

            for bench in self.results[alg]:
                worksheet.write(row, col, bench)

                nRuns = len(self.results[alg][bench])

                for i in range(len(self.results[alg][bench])):
                    row += 1
                    worksheet.write(row, col, self.results[alg][bench][i])

                row -= len(self.results[alg][bench])  # jump back up
                col += 1

            row += 1 + nRuns  # jump down to row after previous results
            col -= 1 + len(self.results[alg])

        logger.info('Export to XLSX completed!')

    def __exportToLatex(self):
        metrics = ['Best', 'Median', 'Worst', 'Mean', 'Std.']

        def only_upper(s):
            return "".join(c for c in s if c.isupper())

        with open(self.__generateExportName('tex'), 'a') as outFile:
            outFile.write('\\documentclass{article}\n')
            outFile.write('\\usepackage[utf8]{inputenc}\n')
            outFile.write('\\usepackage{siunitx}\n')
            outFile.write('\\sisetup{\n')
            outFile.write('round-mode=places,round-precision=3}\n')
            outFile.write('\\begin{document}\n')
            outFile.write('\\begin{table}[h]\n')
            outFile.write('\\centering\n')

            begin_tabular = '\\begin{tabular}{cc'

            for alg in self.results:
                for _i in range(len(self.results[alg])):
                    begin_tabular += 'S'

                firstLine = '   &'

                for benchmark in self.results[alg].keys():
                    firstLine += '  &   \\multicolumn{1}{c}{\\textbf{' + \
                        benchmark + '}}'

                firstLine += ' \\\\'

                break

            begin_tabular += '}\n'
            outFile.write(begin_tabular)
            outFile.write('\\hline\n')
            outFile.write(firstLine + '\n')
            outFile.write('\\hline\n')

            for alg in self.results:
                for metric in metrics:
                    line = ''

                    if metric != 'Worst':
                        line += '   &   ' + metric
                    else:
                        shortAlg = ''
                        if alg.endswith('Algorithm'):
                            shortAlg = only_upper(alg[:-9])
                        else:
                            shortAlg = only_upper(alg)
                        line += '\\textbf{' + shortAlg + '} &   ' + metric

                    for benchmark in self.results[alg]:
                        if metric == 'Best':
                            line += '   &   ' + str(np.amin(self.results[alg][benchmark]))
                        elif metric == 'Median':
                            line += '   &   ' + str(np.median(self.results[alg][benchmark]))
                        elif metric == 'Worst':
                            line += '   &   ' + str(np.amax(self.results[alg][benchmark]))
                        elif metric == 'Mean':
                            line += '   &   ' + str(np.mean(self.results[alg][benchmark]))
                        else:
                            line += '   &   ' + str(np.std(self.results[alg][benchmark]))

                    line += '   \\\\'
                    outFile.write(line + '\n')

                outFile.write('\\hline\n')
            outFile.write('\\end{tabular}\n')
            outFile.write('\\end{table}\n')
            outFile.write('\\end{document}')

        logger.info('Export to Latex completed!')

    def run(self, export='log', verbose=False):
        for alg in self.useAlgorithms:
            self.results[alg] = {}
            if verbose:
                logger.info('Running %s...', alg)
            for bench in self.useBenchmarks:
                benchName = ''
                # check if passed benchmark is class
                if not isinstance(bench, ''.__class__):
                    # set class name as benchmark name
                    benchName = str(type(bench).__name__)
                else:
                    benchName = bench

                if verbose:
                    logger.info('Running %s algorithm on %s benchmark...', alg, benchName)

                self.results[alg][benchName] = []

                for _i in range(self.nRuns):
                    algorithm = self.__algorithmFactory(alg, bench)
                    self.results[alg][benchName].append(algorithm.run())

            if verbose:
                logger.info('---------------------------------------------------')

        if export == 'log':
            self.__exportToLog()
        elif export == 'json':
            self.__exportToJson()
        elif export == 'xlsx':
            self.__exportToXls()
        elif export == 'latex':
            self.__exportToLatex()
        else:
            raise TypeError('Passed export type is not supported!')

        return self.results


1			from __future__ import print_function # for backward compatibility purpose
2
3			import os
4			import logging
5			import json
6			import datetime
7			import xlsxwriter
8			import numpy as np
9			from NiaPy import algorithms, benchmarks
10
11			__all__ = ['algorithms', 'benchmarks']
12			__project__ = 'NiaPy'
13			__version__ = '0.0.0'
14
15			VERSION = "{0} v{1}".format(__project__, __version__)
16
17			logging.basicConfig()
18			logger = logging.getLogger('NiaPy')
19			logger.setLevel('INFO')
20
21
22			class Runner(object):
23			# pylint: disable=too-many-instance-attributes, too-many-locals
24			def __init__(self, D, NP, nFES, nRuns, useAlgorithms, useBenchmarks,
25			A=0.5, r=0.5, Qmin=0.0, Qmax=2.0, F=0.5, CR=0.9, alpha=0.5,
26			betamin=0.2, gamma=1.0, p=0.5):
27			self.D = D
28			self.NP = NP
29			self.nFES = nFES
30			self.nRuns = nRuns
31			self.useAlgorithms = useAlgorithms
32			self.useBenchmarks = useBenchmarks
33			self.A = A
34			self.r = r
35			self.Qmin = Qmin
36			self.Qmax = Qmax
37			self.F = F
38			self.CR = CR
39			self.alpha = alpha
40			self.betamin = betamin
41			self.gamma = gamma
42			self.p = p
43			self.results = {}
44
45			def __algorithmFactory(self, name, benchmark):
46			bench = benchmarks.utility.Utility().get_benchmark(benchmark)
47			algorithm = None
48
49			if name == 'BatAlgorithm':
50			algorithm = algorithms.basic.BatAlgorithm(
51			self.D, self.NP, self.nFES, self.A, self.r, self.Qmin, self.Qmax, bench)
52			elif name == 'DifferentialEvolutionAlgorithm':
53			algorithm = algorithms.basic.DifferentialEvolutionAlgorithm(
54			self.D, self.NP, self.nFES, self.F, self.CR, bench)
55			elif name == 'FireflyAlgorithm':
56			algorithm = algorithms.basic.FireflyAlgorithm(
57			self.D, self.NP, self.nFES, self.alpha, self.betamin, self.gamma, bench)
58			elif name == 'FlowerPollinationAlgorithm':
59			algorithm = algorithms.basic.FlowerPollinationAlgorithm(
60			self.D, self.NP, self.nFES, self.p, bench)
61			elif name == 'GreyWolfOptimizer':
62			algorithm = algorithms.basic.GreyWolfOptimizer(
63			self.D, self.NP, self.nFES, bench)
64			elif name == 'ArtificialBeeColonyAlgorithm':
65			algorithm = algorithms.basic.ArtificialBeeColonyAlgorithm(self.D, self.NP, self.nFES, bench)
66			elif name == 'HybridBatAlgorithm':
67			algorithm = algorithms.modified.HybridBatAlgorithm(
68			self.D, self.NP, self.nFES, self.A, self.r, self.F, self.CR, self.Qmin, self.Qmax, bench)
69			else:
70			raise TypeError('Passed benchmark is not defined!')
71
72			return algorithm
73
74			@classmethod
75			def __createExportDir(cls):
76			if not os.path.exists('export'):
77			os.makedirs('export')
78
79			@classmethod
80			def __generateExportName(cls, extension):
81			return 'export/' + str(datetime.datetime.now()) + '.' + extension
82
83			def __exportToLog(self):
84			print(self.results)
85
86			def __exportToJson(self):
87			self.__createExportDir()
88			with open(self.__generateExportName('json'), 'w') as outFile:
89			json.dump(self.results, outFile)
90			logger.info('Export to JSON completed!')
91
92			def __exportToXls(self):
93			workbook = xlsxwriter.Workbook(self.__generateExportName('xlsx'))
94			worksheet = workbook.add_worksheet()
95
96			row = 0
97			col = 0
98			nRuns = 0
99
100			for alg in self.results:
101			worksheet.write(row, col, alg)
102			col += 1
103
104			for bench in self.results[alg]:
105			worksheet.write(row, col, bench)
106
107			nRuns = len(self.results[alg][bench])
108
109			for i in range(len(self.results[alg][bench])):
110			row += 1
111			worksheet.write(row, col, self.results[alg][bench][i])
112
113			row -= len(self.results[alg][bench]) # jump back up
114			col += 1
115
116			row += 1 + nRuns # jump down to row after previous results
117			col -= 1 + len(self.results[alg])
118
119			logger.info('Export to XLSX completed!')
120
121			def __exportToLatex(self):
122			metrics = ['Best', 'Median', 'Worst', 'Mean', 'Std.']
123
124			def only_upper(s):
125			return "".join(c for c in s if c.isupper())
126
127			with open(self.__generateExportName('tex'), 'a') as outFile:
128			outFile.write('\\documentclass{article}\n')
129			outFile.write('\\usepackage[utf8]{inputenc}\n')
130			outFile.write('\\usepackage{siunitx}\n')
131			outFile.write('\\sisetup{\n')
132			outFile.write('round-mode=places,round-precision=3}\n')
133			outFile.write('\\begin{document}\n')
134			outFile.write('\\begin{table}[h]\n')
135			outFile.write('\\centering\n')
136
137			begin_tabular = '\\begin{tabular}{cc'
138
139			for alg in self.results:
140			for _i in range(len(self.results[alg])):
141			begin_tabular += 'S'
142
143			firstLine = ' &'
144
145			for benchmark in self.results[alg].keys():
146			firstLine += ' & \\multicolumn{1}{c}{\\textbf{' + \
147			benchmark + '}}'
148
149			firstLine += ' \\\\'
150
151			break
152
153			begin_tabular += '}\n'
154			outFile.write(begin_tabular)
155			outFile.write('\\hline\n')
156			outFile.write(firstLine + '\n')
157			outFile.write('\\hline\n')
158
159			for alg in self.results:
160			for metric in metrics:
161			line = ''
162
163			if metric != 'Worst':
164			line += ' & ' + metric
165			else:
166			shortAlg = ''
167			if alg.endswith('Algorithm'):
168			shortAlg = only_upper(alg[:-9])
169			else:
170			shortAlg = only_upper(alg)
171			line += '\\textbf{' + shortAlg + '} & ' + metric
172
173			for benchmark in self.results[alg]:
174			if metric == 'Best':
175			line += ' & ' + str(np.amin(self.results[alg][benchmark]))
176			elif metric == 'Median':
177			line += ' & ' + str(np.median(self.results[alg][benchmark]))
178			elif metric == 'Worst':
179			line += ' & ' + str(np.amax(self.results[alg][benchmark]))
180			elif metric == 'Mean':
181			line += ' & ' + str(np.mean(self.results[alg][benchmark]))
182			else:
183			line += ' & ' + str(np.std(self.results[alg][benchmark]))
184
185			line += ' \\\\'
186			outFile.write(line + '\n')
187
188			outFile.write('\\hline\n')
189			outFile.write('\\end{tabular}\n')
190			outFile.write('\\end{table}\n')
191			outFile.write('\\end{document}')
192
193			logger.info('Export to Latex completed!')
194
195			def run(self, export='log', verbose=False):
196			for alg in self.useAlgorithms:
197			self.results[alg] = {}
198			if verbose:
199			logger.info('Running %s...', alg)
200			for bench in self.useBenchmarks:
201			benchName = ''
202			# check if passed benchmark is class
203			if not isinstance(bench, ''.__class__):
204			# set class name as benchmark name
205			benchName = str(type(bench).__name__)
206			else:
207			benchName = bench
208
209			if verbose:
210			logger.info('Running %s algorithm on %s benchmark...', alg, benchName)
211
212			self.results[alg][benchName] = []
213
214			for _i in range(self.nRuns):
215			algorithm = self.__algorithmFactory(alg, bench)
216			self.results[alg][benchName].append(algorithm.run())
217
218			if verbose:
219			logger.info('---------------------------------------------------')
220
221			if export == 'log':
222			self.__exportToLog()
223			elif export == 'json':
224			self.__exportToJson()
225			elif export == 'xlsx':
226			self.__exportToXls()
227			elif export == 'latex':
228			self.__exportToLatex()
229			else:
230			raise TypeError('Passed export type is not supported!')
231
232			return self.results
233

NiaOrg / NiaPy

Pull Request — master (#41)

Runner.only_upper() A

Complexity

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Duplication

Importance

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