NatLibFi / Skosmos

model/SkosmosTurtleParser.php

Doc Comments +1 added lines

@@ -55,6 +55,7 @@
 
     /**
      * Steps back, restoring the previous character or statement read() to the input buffer.
+     * @param string $chars
      */
     protected function unread($chars)
     {

Spacing +2 added lines, -2 removed lines

@@ -21,7 +21,7 @@ 
      */
     protected function peek()
     {
-        if(!$this->dataLength) { $this->dataLength = strlen($this->data); }
+        if (!$this->dataLength) { $this->dataLength = strlen($this->data); }
         if ($this->dataLength > $this->bytePos) {
             $slice = substr($this->data, $this->bytePos, 4);
             return mb_substr($slice, 0, 1, "UTF-8");
@@ -78,7 +78,7 @@ 
     {
         if ($this->bytePos - 4 > 0) {
             $slice = substr($this->data, $this->bytePos - 4, 4);
-            while($slice != '') {
+            while ($slice != '') {
                 if (!self::isWhitespace(mb_substr($slice, -1, 1, "UTF-8"))) {
                     return;
                 }

controller/WebController.php

Spacing +24 added lines, -24 removed lines

@@ -37,7 +37,7 @@ 
         // specify where to look for templates and cache
         $loader = new Twig_Loader_Filesystem('view');
         // initialize Twig environment
-        $this->twig = new Twig_Environment($loader, array('cache' => $tmpDir,'auto_reload' => true));
+        $this->twig = new Twig_Environment($loader, array('cache' => $tmpDir, 'auto_reload' => true));
         $this->twig->addExtension(new Twig_Extensions_Extension_I18n());
         // used for setting the base href for the relative urls
         $this->twig->addGlobal("BaseHref", $this->getBaseHref());
@@ -64,7 +64,7 @@ 
         $this->twig->addFilter(new Twig_SimpleFilter('link_url', array($this, 'linkUrlFilter')));
 
         // register a Twig filter for generating strings from language codes with CLDR
-        $langFilter = new Twig_SimpleFilter('lang_name', function ($langcode, $lang) {
+        $langFilter = new Twig_SimpleFilter('lang_name', function($langcode, $lang) {
             return Language::getName($langcode, $lang);
         });
         $this->twig->addFilter($langFilter);
@@ -111,18 +111,18 @@ 
         $localname = $vocab->getLocalName($uri);
         if ($localname !== $uri && $localname === urlencode($localname)) {
             // check that the prefix stripping worked, and there are no problematic chars in localname
-            $paramstr = sizeof($params) > 0 ? '?' . http_build_query($params) : '';
+            $paramstr = sizeof($params) > 0 ? '?'.http_build_query($params) : '';
             if ($type && $type !== '' && $type !== 'vocab' && !($localname === '' && $type === 'page')) {
-                return "$vocid/$lang/$type/$localname" . $paramstr;
+                return "$vocid/$lang/$type/$localname".$paramstr;
             }
 
-            return "$vocid/$lang/$localname" . $paramstr;
+            return "$vocid/$lang/$localname".$paramstr;
         }
 
         // case 2: URI outside vocabulary namespace, or has problematic chars
         // pass the full URI as parameter instead
         $params['uri'] = $uri;
-        return "$vocid/$lang/$type/?" . http_build_query($params);
+        return "$vocid/$lang/$type/?".http_build_query($params);
     }
 
     /**
@@ -279,12 +279,12 @@ 
     private function createFeedbackHeaders($fromName, $fromEmail, $toMail)
     {
         $headers = "MIME-Version: 1.0″ . '\r\n";
-        $headers .= "Content-type: text/html; charset=UTF-8" . "\r\n";
+        $headers .= "Content-type: text/html; charset=UTF-8"."\r\n";
         if ($toMail) {
-            $headers .= "Cc: " . $this->model->getConfig()->getFeedbackAddress() . "\r\n";
+            $headers .= "Cc: ".$this->model->getConfig()->getFeedbackAddress()."\r\n";
         }
 
-        $headers .= "From: $fromName <$fromEmail>" . "\r\n" . 'X-Mailer: PHP/' . phpversion();
+        $headers .= "From: $fromName <$fromEmail>"."\r\n".'X-Mailer: PHP/'.phpversion();
         return $headers;
     }
 
@@ -299,20 +299,20 @@ 
     {
         $toAddress = ($toMail) ? $toMail : $this->model->getConfig()->getFeedbackAddress();
         if ($fromVocab !== null && $fromVocab !== '') {
-            $message = 'Feedback from vocab: ' . strtoupper($fromVocab) . "<br />" . $message;
+            $message = 'Feedback from vocab: '.strtoupper($fromVocab)."<br />".$message;
         }
 
-        $subject = SERVICE_NAME . " feedback";
+        $subject = SERVICE_NAME." feedback";
         $headers = $this->createFeedbackHeaders($fromName, $fromEmail, $toMail);
         $envelopeSender = FEEDBACK_ENVELOPE_SENDER;
         $params = empty($envelopeSender) ? '' : "-f $envelopeSender";
 
         // adding some information about the user for debugging purposes.
-        $message = $message . "<br /><br /> Debugging information:"
-            . "<br />Timestamp: " . date(DATE_RFC2822)
-            . "<br />User agent: " . $request->getServerConstant('HTTP_USER_AGENT')
-            . "<br />IP address: " . $request->getServerConstant('REMOTE_ADDR')
-            . "<br />Referer: " . $request->getServerConstant('HTTP_REFERER');
+        $message = $message."<br /><br /> Debugging information:"
+            . "<br />Timestamp: ".date(DATE_RFC2822)
+            . "<br />User agent: ".$request->getServerConstant('HTTP_USER_AGENT')
+            . "<br />IP address: ".$request->getServerConstant('REMOTE_ADDR')
+            . "<br />Referer: ".$request->getServerConstant('HTTP_REFERER');
 
         try {
             mail($toAddress, $subject, $message, $headers, $params);
@@ -320,7 +320,7 @@ 
             header("HTTP/1.0 404 Not Found");
             $template = $this->twig->loadTemplate('error-page.twig');
             if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                error_log('Caught exception: ' . $e->getMessage());
+                error_log('Caught exception: '.$e->getMessage());
             }
 
             echo $template->render(
@@ -367,7 +367,7 @@ 
         $vocids = ($vocabs !== null && $vocabs !== '') ? explode(' ', $vocabs) : null;
         $vocabObjects = array();
         if ($vocids) {
-            foreach($vocids as $vocid) {
+            foreach ($vocids as $vocid) {
                 $vocabObjects[] = $this->model->getVocabulary($vocid);
             }
         }
@@ -378,7 +378,7 @@ 
         } catch (Exception $e) {
             header("HTTP/1.0 404 Not Found");
             if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                error_log('Caught exception: ' . $e->getMessage());
+                error_log('Caught exception: '.$e->getMessage());
             }
             $this->invokeGenericErrorPage($request, $e->getMessage());
             return;
@@ -394,7 +394,7 @@ 
                 'search_count' => $counts,
                 'languages' => $this->languages,
                 'search_results' => $searchResults,
-                'rest' => $parameters->getOffset()>0,
+                'rest' => $parameters->getOffset() > 0,
                 'global_search' => true,
                 'term' => $request->getQueryParam('q'),
                 'lang_list' => $langList,
@@ -419,7 +419,7 @@ 
         } catch (Exception $e) {
             header("HTTP/1.0 404 Not Found");
             if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                error_log('Caught exception: ' . $e->getMessage());
+                error_log('Caught exception: '.$e->getMessage());
             }
 
             echo $template->render(
@@ -440,7 +440,7 @@ 
         } catch (Exception $e) {
             header("HTTP/1.0 404 Not Found");
             if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                error_log('Caught exception: ' . $e->getMessage());
+                error_log('Caught exception: '.$e->getMessage());
             }
 
             echo $template->render(
@@ -457,7 +457,7 @@ 
                 'vocab' => $vocab,
                 'search_results' => $searchResults,
                 'search_count' => $counts,
-                'rest' => $parameters->getOffset()>0,
+                'rest' => $parameters->getOffset() > 0,
                 'limit_parent' => $parameters->getParentLimit(),
                 'limit_type' =>  $request->getQueryParam('type') ? explode('+', $request->getQueryParam('type')) : null,
                 'limit_group' => $parameters->getGroupLimit(),
@@ -582,7 +582,7 @@ 
      * Loads and renders the view containing a list of recent changes in the vocabulary.
      * @param Request $request
      */
-    public function invokeChangeList($request, $prop='dc:created')
+    public function invokeChangeList($request, $prop = 'dc:created')
     {
         // set language parameters for gettext
         $this->setLanguageProperties($request->getLang());

model/sparql/GenericSparql.php

Doc Comments +4 added lines, -2 removed lines

@@ -453,7 +453,7 @@ 
      * Returns information (as a graph) for one or more concept URIs
      * @param mixed $uris concept URI (string) or array of URIs
      * @param string|null $arrayClass the URI for thesaurus array class, or null if not used
-     * @param \Vocabulary[]|null $vocabs vocabularies to target
+     * @param Vocabulary[] $vocabs vocabularies to target
      * @return \Concept[]
      */
     public function queryConceptInfoGraph($uris, $arrayClass = null, $vocabs = array()) {
@@ -673,7 +673,7 @@ 
 
     /**
      * Generate a VALUES clause for limiting the targeted graphs.
-     * @param Vocabulary[]|null $vocabs array of Vocabulary objects to target
+     * @param Vocabulary[] $vocabs array of Vocabulary objects to target
      * @return string VALUES clause, or "" if not necessary to limit
      */
     protected function formatValuesGraph($vocabs) {
@@ -853,6 +853,7 @@ 
      * @param string $searchLang language code used for matching labels (null means any language)
      * @param string[] $props properties to target e.g. array('skos:prefLabel','skos:altLabel')
      * @param boolean $unique restrict results to unique concepts (default: false)
+     * @param string $filterGraph
      * @return string sparql query
      */
     protected function generateConceptSearchQueryInner($term, $lang, $searchLang, $props, $unique, $filterGraph)
@@ -1118,6 +1119,7 @@ 
     /**
      * Generates sparql query clauses used for creating the alphabetical index.
      * @param string $letter the letter (or special class) to search for
+     * @param string $lang
      * @return array of sparql query clause strings
      */
     private function formatFilterConditions($letter, $lang) {

Braces +10 added lines, -6 removed lines

@@ -46,12 +46,16 @@ 
         $this->client = new EasyRdf\Sparql\Client($endpoint);
 
         // set graphClause so that it can be used by all queries
-        if ($this->isDefaultEndpoint()) // default endpoint; query any graph (and catch it in a variable)
+        if ($this->isDefaultEndpoint()) {
+          // default endpoint; query any graph (and catch it in a variable)
         {
             $this->graphClause = "GRAPH $graph";
-        } elseif ($graph) // query a specific graph
+        }
+        } elseif ($graph) {
+          // query a specific graph
         {
             $this->graphClause = "GRAPH <$graph>";
+        }
         } else // query the default graph
         {
             $this->graphClause = "";
@@ -100,8 +104,9 @@ 
             }
         }
         foreach ($graphs as $graph) {
-            if($graph !== NULL)
-                $clause .= "FROM NAMED <$graph> "; 
+            if($graph !== NULL) {
+                            $clause .= "FROM NAMED <$graph> ";
+            }
         }
         return $clause;
     }
@@ -1847,8 +1852,7 @@ 
         if (sizeof($ret) > 0) {
             // existing concept, with children
             return $ret;
-        }
-        else {
+        } else {
             // nonexistent concept
             return null;
         }

Indentation +7 added lines, -7 removed lines

@@ -64,7 +64,7 @@ 
      *
      * @param string $query
      * @return string
-    */
+     */
     protected function generateQueryPrefixes($query)
     {
         // Check for undefined prefixes
@@ -1809,7 +1809,7 @@ 
 
     /**
      * Generates a sparql query for finding the hierarchy for a concept.
-	 * A concept may be a top concept in multiple schemes, returned as a single whitespace-separated literal.
+     * A concept may be a top concept in multiple schemes, returned as a single whitespace-separated literal.
      * @param string $uri concept uri.
      * @param string $lang
      * @param string $fallback language to use if label is not available in the preferred language
@@ -1886,11 +1886,11 @@ 
                 $ret[$uri]['exact'] = $row->exact->getUri();
             }
             if (isset($row->tops)) {
-               $topConceptsList=array();
-               $topConceptsList=explode(" ", $row->tops->getValue());
-               // sort to garantee an alphabetical ordering of the URI
-               sort($topConceptsList);
-               $ret[$uri]['tops'] = $topConceptsList;
+                $topConceptsList=array();
+                $topConceptsList=explode(" ", $row->tops->getValue());
+                // sort to garantee an alphabetical ordering of the URI
+                sort($topConceptsList);
+                $ret[$uri]['tops'] = $topConceptsList;
             }
             if (isset($row->children)) {
                 if (!isset($ret[$uri]['narrower'])) {

Spacing +54 added lines, -54 removed lines

@@ -87,11 +87,11 @@ 
     protected function query($query) {
         $queryId = sprintf("%05d", rand(0, 99999));
         $logger = $this->model->getLogger();
-        $logger->info("[qid $queryId] SPARQL query:\n" . $this->generateQueryPrefixes($query) . "\n$query\n");
+        $logger->info("[qid $queryId] SPARQL query:\n".$this->generateQueryPrefixes($query)."\n$query\n");
         $starttime = microtime(true);
         $result = $this->client->query($query);
         $elapsed = intval(round((microtime(true) - $starttime) * 1000));
-        if(method_exists($result, 'numRows')) {
+        if (method_exists($result, 'numRows')) {
             $numRows = $result->numRows();
             $logger->info("[qid $queryId] result: $numRows rows returned in $elapsed ms");
         } else { // graph result
@@ -107,20 +107,20 @@ 
      * @param Vocabulary[]|null $vocabs
      * @return string
      */
-    protected function generateFromClause($vocabs=null) {
+    protected function generateFromClause($vocabs = null) {
         $graphs = array();
         $clause = '';
         if (!$vocabs) {
             return $this->graph !== '?graph' && $this->graph !== NULL ? "FROM <$this->graph>" : '';
         }
-        foreach($vocabs as $vocab) {
+        foreach ($vocabs as $vocab) {
             $graph = $vocab->getGraph();
             if (!in_array($graph, $graphs)) {
                 array_push($graphs, $graph);
             }
         }
         foreach ($graphs as $graph) {
-            if($graph !== NULL)
+            if ($graph !== NULL)
                 $clause .= "FROM NAMED <$graph> "; 
         }
         return $clause;
@@ -664,9 +664,9 @@ 
                 $conceptscheme['title'] = $row->title->getValue();
             }
             // add dct:subject and their labels in the result
-            if(isset($row->domain) && isset($row->domainLabel)){
-                $conceptscheme['subject']['uri']=$row->domain->getURI();
-                $conceptscheme['subject']['prefLabel']=$row->domainLabel->getValue();
+            if (isset($row->domain) && isset($row->domainLabel)) {
+                $conceptscheme['subject']['uri'] = $row->domain->getURI();
+                $conceptscheme['subject']['prefLabel'] = $row->domainLabel->getValue();
             }
 
             $ret[$row->cs->getURI()] = $conceptscheme;
@@ -729,7 +729,7 @@ 
         foreach ($graphs as $graph) {
           $values[] = "<$graph>";
         }
-        return "FILTER (?graph IN (" . implode(',', $values) . "))";
+        return "FILTER (?graph IN (".implode(',', $values)."))";
     }
 
     /**
@@ -739,16 +739,16 @@ 
      * @return string sparql query clauses
      */
     protected function formatLimitAndOffset($limit, $offset) {
-        $limit = ($limit) ? 'LIMIT ' . $limit : '';
-        $offset = ($offset) ? 'OFFSET ' . $offset : '';
+        $limit = ($limit) ? 'LIMIT '.$limit : '';
+        $offset = ($offset) ? 'OFFSET '.$offset : '';
         // eliminating whitespace and line changes when the conditions aren't needed.
         $limitandoffset = '';
         if ($limit && $offset) {
-            $limitandoffset = "\n" . $limit . "\n" . $offset;
+            $limitandoffset = "\n".$limit."\n".$offset;
         } elseif ($limit) {
-            $limitandoffset = "\n" . $limit;
+            $limitandoffset = "\n".$limit;
         } elseif ($offset) {
-            $limitandoffset = "\n" . $offset;
+            $limitandoffset = "\n".$offset;
         }
 
         return $limitandoffset;
@@ -768,7 +768,7 @@ 
             }
         }
 
-        return implode(' UNION ', $typePatterns);;
+        return implode(' UNION ', $typePatterns); ;
     }
 
     /**
@@ -900,14 +900,14 @@ 
         // if search language and UI/display language differ, must also consider case where there is no prefLabel in
         // the display language; in that case, should use the label with the same language as the matched label
         $labelcondFallback = ($searchLang != $lang) ?
-          "OPTIONAL { # in case previous OPTIONAL block gives no labels\n" .
+          "OPTIONAL { # in case previous OPTIONAL block gives no labels\n".
           "?s skos:prefLabel ?label . FILTER (LANGMATCHES(LANG(?label), LANG(?match))) }" : "";
           
         //  Including the labels if there is no query term given.
         if ($rawterm === '') {
           $labelClause = "?s skos:prefLabel ?label .";
-          $labelClause = ($lang) ? $labelClause . " FILTER (LANGMATCHES(LANG(?label), '$lang'))" : $labelClause . "";
-          return $labelClause . " BIND(?label AS ?match)";
+          $labelClause = ($lang) ? $labelClause." FILTER (LANGMATCHES(LANG(?label), '$lang'))" : $labelClause."";
+          return $labelClause." BIND(?label AS ?match)";
         }
 
         /*
@@ -971,20 +971,20 @@ 
         $schemecond = '';
         if (!empty($schemes)) {
             $conditions = array();
-            foreach($schemes as $scheme) {
+            foreach ($schemes as $scheme) {
                 $conditions[] = "{?s skos:inScheme <$scheme>}";
             }
-            $schemecond = '{'.implode(" UNION ",$conditions).'}';
+            $schemecond = '{'.implode(" UNION ", $conditions).'}';
         }
-        $filterDeprecated="";
+        $filterDeprecated = "";
         //show or hide deprecated concepts
-        if(!$showDeprecated){
-            $filterDeprecated="FILTER NOT EXISTS { ?s owl:deprecated true }";
+        if (!$showDeprecated) {
+            $filterDeprecated = "FILTER NOT EXISTS { ?s owl:deprecated true }";
         }
         // extra conditions for parent and group, if specified
-        $parentcond = ($params->getParentLimit()) ? "?s skos:broader+ <" . $params->getParentLimit() . "> ." : "";
-        $groupcond = ($params->getGroupLimit()) ? "<" . $params->getGroupLimit() . "> skos:member ?s ." : "";
-        $pgcond = $parentcond . $groupcond;
+        $parentcond = ($params->getParentLimit()) ? "?s skos:broader+ <".$params->getParentLimit()."> ." : "";
+        $groupcond = ($params->getGroupLimit()) ? "<".$params->getGroupLimit()."> skos:member ?s ." : "";
+        $pgcond = $parentcond.$groupcond;
 
         $orderextra = $this->isDefaultEndpoint() ? $this->graph : '';
 
@@ -1057,9 +1057,9 @@ 
             $hit['type'][] = $this->shortenUri($typeuri);
         }
 
-        if(!empty($fields)) {
+        if (!empty($fields)) {
             foreach ($fields as $prop) {
-                $propname = $prop . 's';
+                $propname = $prop.'s';
                 if (isset($row->$propname)) {
                     foreach (explode("\n", $row->$propname->getValue()) as $line) {
                         $rdata = str_getcsv($line, ',', '"', '"');
@@ -1074,7 +1074,7 @@ 
                             $propvals = $rdata[2];
                         }
 
-                        $hit['skos:' . $prop][] = $propvals;
+                        $hit['skos:'.$prop][] = $propvals;
                     }
                 }
             }
@@ -1150,7 +1150,7 @@ 
      * @return array query result object
      */
     public function queryConcepts($vocabs, $fields = null, $unique = false, $params, $showDeprecated = false) {
-        $query = $this->generateConceptSearchQuery($fields, $unique, $params,$showDeprecated);
+        $query = $this->generateConceptSearchQuery($fields, $unique, $params, $showDeprecated);
         $results = $this->query($query);
         return $this->transformConceptSearchResults($results, $vocabs, $fields);
     }
@@ -1204,9 +1204,9 @@ 
         $conditions = $this->formatFilterConditions($letter, $lang);
         $filtercondLabel = $conditions['filterpref'];
         $filtercondALabel = $conditions['filteralt'];
-        $filterDeprecated="";
-        if(!$showDeprecated){
-            $filterDeprecated="FILTER NOT EXISTS { ?s owl:deprecated true }";
+        $filterDeprecated = "";
+        if (!$showDeprecated) {
+            $filterDeprecated = "FILTER NOT EXISTS { ?s owl:deprecated true }";
         }
         $query = <<<EOQ
 SELECT DISTINCT ?s ?label ?alabel $fcl
@@ -1282,8 +1282,8 @@ 
      * @param array $classes
      * @param boolean $showDeprecated whether to include deprecated concepts in the result (default: false)
      */
-    public function queryConceptsAlphabetical($letter, $lang, $limit = null, $offset = null, $classes = null,$showDeprecated = false) {
-        $query = $this->generateAlphabeticalListQuery($letter, $lang, $limit, $offset, $classes,$showDeprecated);
+    public function queryConceptsAlphabetical($letter, $lang, $limit = null, $offset = null, $classes = null, $showDeprecated = false) {
+        $query = $this->generateAlphabeticalListQuery($letter, $lang, $limit, $offset, $classes, $showDeprecated);
         $results = $this->query($query);
         return $this->transformAlphabeticalListResults($results);
     }
@@ -1617,7 +1617,7 @@ 
                 if (!isset($row->label) || $row->label->getLang() === $lang) {
                     $ret[$row->object->getUri()] = $val;
                 } elseif ($row->label->getLang() === $fallbacklang) {
-                    $val['label'] .= ' (' . $row->label->getLang() . ')';
+                    $val['label'] .= ' ('.$row->label->getLang().')';
                     $ret[$row->object->getUri()] = $val;
                 }
             }
@@ -1713,10 +1713,10 @@ 
 
             $label = null;
             if (isset($row->label)) {
-                if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang . "-") == 0) {
+                if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang."-") == 0) {
                     $label = $row->label->getValue();
                 } else {
-                    $label = $row->label->getValue() . " (" . $row->label->getLang() . ")";
+                    $label = $row->label->getValue()." (".$row->label->getLang().")";
                 }
 
             }
@@ -1792,8 +1792,8 @@ 
         foreach ($result as $row) {
             if (isset($row->top) && isset($row->label)) {
                 $label = $row->label->getValue();
-                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang . "-") !== 0) {
-                    $label .= ' (' . $row->label->getLang() . ')';
+                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang."-") !== 0) {
+                    $label .= ' ('.$row->label->getLang().')';
                 }
                 $top = array('uri' => $row->top->getUri(), 'topConceptOf' => $row->topuri->getUri(), 'label' => $label, 'hasChildren' => filter_var($row->children->getValue(), FILTER_VALIDATE_BOOLEAN));
                 if (isset($row->notation)) {
@@ -1886,8 +1886,8 @@ 
                 $ret[$uri]['exact'] = $row->exact->getUri();
             }
             if (isset($row->tops)) {
-               $topConceptsList=array();
-               $topConceptsList=explode(" ", $row->tops->getValue());
+               $topConceptsList = array();
+               $topConceptsList = explode(" ", $row->tops->getValue());
                // sort to garantee an alphabetical ordering of the URI
                sort($topConceptsList);
                $ret[$uri]['tops'] = $topConceptsList;
@@ -1900,8 +1900,8 @@ 
                 $label = null;
                 if (isset($row->childlabel)) {
                     $label = $row->childlabel->getValue();
-                    if ($row->childlabel->getLang() !== $lang && strpos($row->childlabel->getLang(), $lang . "-") !== 0) {
-                        $label .= " (" . $row->childlabel->getLang() . ")";
+                    if ($row->childlabel->getLang() !== $lang && strpos($row->childlabel->getLang(), $lang."-") !== 0) {
+                        $label .= " (".$row->childlabel->getLang().")";
                     }
 
                 }
@@ -1922,8 +1922,8 @@ 
             }
             if (isset($row->label)) {
                 $preflabel = $row->label->getValue();
-                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang . "-") !== 0) {
-                    $preflabel .= ' (' . $row->label->getLang() . ')';
+                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang."-") !== 0) {
+                    $preflabel .= ' ('.$row->label->getLang().')';
                 }
 
                 $ret[$uri]['prefLabel'] = $preflabel;
@@ -2044,9 +2044,9 @@ 
      */
     private function generateConceptGroupContentsQuery($groupClass, $group, $lang, $showDeprecated = false) {
         $fcl = $this->generateFromClause();
-        $filterDeprecated="";
-        if(!$showDeprecated){
-            $filterDeprecated="  FILTER NOT EXISTS { ?conc owl:deprecated true }";
+        $filterDeprecated = "";
+        if (!$showDeprecated) {
+            $filterDeprecated = "  FILTER NOT EXISTS { ?conc owl:deprecated true }";
         }
         $query = <<<EOQ
 SELECT ?conc ?super ?label ?members ?type ?notation $fcl
@@ -2085,10 +2085,10 @@ 
                     'type' => array($row->type->shorten()),
                 );
                 if (isset($row->label)) {
-                    if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang . "-") == 0) {
+                    if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang."-") == 0) {
                         $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue();
                     } else {
-                        $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue() . " (" . $row->label->getLang() . ")";
+                        $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue()." (".$row->label->getLang().")";
                     }
 
                 }
@@ -2116,8 +2116,8 @@ 
      * @param boolean $showDeprecated whether to include deprecated concepts in search results
      * @return array Result array with concept URI as key and concept label as value
      */
-    public function listConceptGroupContents($groupClass, $group, $lang,$showDeprecated = false) {
-        $query = $this->generateConceptGroupContentsQuery($groupClass, $group, $lang,$showDeprecated);
+    public function listConceptGroupContents($groupClass, $group, $lang, $showDeprecated = false) {
+        $query = $this->generateConceptGroupContentsQuery($groupClass, $group, $lang, $showDeprecated);
         $result = $this->query($query);
         return $this->transformConceptGroupContentsResults($result, $lang);
     }
@@ -2130,7 +2130,7 @@ 
      */
     private function generateChangeListQuery($lang, $offset, $prop) {
         $fcl = $this->generateFromClause();
-        $offset = ($offset) ? 'OFFSET ' . $offset : '';
+        $offset = ($offset) ? 'OFFSET '.$offset : '';
 
         $query = <<<EOQ
 SELECT DISTINCT ?concept ?date ?label $fcl

model/DataObject.php

Braces +3 added lines, -1 removed lines

@@ -79,10 +79,12 @@
         if ($sortable !== null) {
             uksort($sortable, array($this, 'mycompare'));
             foreach ($sortable as $prop => $vals) {
-                if (is_array($prop)) // the ConceptProperty objects have their own sorting methods
+                if (is_array($prop)) {
+                  // the ConceptProperty objects have their own sorting methods
                 {
                     ksort($sortable[$prop]);
                 }
+                }
             }
         }
         return $sortable;

Indentation +2 added lines, -2 removed lines

@@ -124,8 +124,8 @@
      */
     public function getEnvLang()
     {
-       // get language from locale, same as used by gettext, set by Controller
-       return substr(getenv("LC_ALL"), 0, 2); // @codeCoverageIgnore
+        // get language from locale, same as used by gettext, set by Controller
+        return substr(getenv("LC_ALL"), 0, 2); // @codeCoverageIgnore
     }
 
     /**

model/Concept.php

Doc Comments +2 added lines

@@ -50,6 +50,7 @@ 
      * @param Vocabulary $vocab
      * @param EasyRdf\Resource $resource
      * @param EasyRdf\Graph $graph
+     * @param string|null $clang
      */
     public function __construct($model, $vocab, $resource, $graph, $clang)
     {
@@ -526,6 +527,7 @@ 
 
     /**
      * Gets the groups/arrays the concept belongs to.
+     * @param boolean $includeArrays
      */
     public function getReverseResources($includeArrays) {
         $groups = array();

Spacing +23 added lines, -23 removed lines

@@ -137,9 +137,9 @@ 
                 return $this->resource->label($fallback);
             }
             // We need to check all the labels in case one of them matches a subtag of the current language
-            foreach($this->resource->allLiterals('skos:prefLabel') as $label) {
+            foreach ($this->resource->allLiterals('skos:prefLabel') as $label) {
                 // the label lang code is a subtag of the UI lang eg. en-GB - create a new literal with the main language
-                if ($label !== null && strpos($label->getLang(), $fallback . '-') === 0) {
+                if ($label !== null && strpos($label->getLang(), $fallback.'-') === 0) {
                     return EasyRdf\Literal::create($label, $fallback);
                 }
             }
@@ -160,7 +160,7 @@ 
 
     public function hasXlLabel($prop = 'prefLabel')
     {
-        if ($this->resource->hasProperty('skosxl:' . $prop)) {
+        if ($this->resource->hasProperty('skosxl:'.$prop)) {
             return true;
         }
         return false;
@@ -169,7 +169,7 @@ 
     public function getXlLabel()
     {
         $labels = $this->resource->allResources('skosxl:prefLabel');
-        foreach($labels as $labres) {
+        foreach ($labels as $labres) {
             $label = $labres->getLiteral('skosxl:literalForm');
             if ($label !== null && $label->getLang() == $this->clang) {
                 return new LabelSkosXL($this->model, $labres);
@@ -276,7 +276,7 @@ 
         // catch external subjects that have $res as object
         $extSubjects = $exGraph->resourcesMatching("schema:about", $res);
 
-        $propList =  array_unique(array_merge(
+        $propList = array_unique(array_merge(
             $this->DEFAULT_EXT_PROPERTIES,
             $this->getVocab()->getConfig()->getExtProperties(),
             $this->getVocab()->getConfig()->getPlugins()->getExtProperties()
@@ -301,7 +301,7 @@ 
      * @param string[] $seen Processed resources so far
      * @param string[] $props (optional) limit to these property URIs
      */
-    private function addExternalTriplesToGraph($res, &$seen, $props=null)
+    private function addExternalTriplesToGraph($res, &$seen, $props = null)
     {
         if (array_key_exists($res->getUri(), $seen) && $seen[$res->getUri()] === 0) {
             return;
@@ -331,7 +331,7 @@ 
      */
     private function addPropertyValues($res, $prop, &$seen)
     {
-        $resList = $res->allResources('<' . $prop . '>');
+        $resList = $res->allResources('<'.$prop.'>');
 
         foreach ($resList as $res2) {
             if ($res2->isBNode()) {
@@ -341,7 +341,7 @@ 
             $this->addResourceReifications($res, $prop, $res2, $seen);
         }
 
-        $litList = $res->allLiterals('<' . $prop . '>');
+        $litList = $res->allLiterals('<'.$prop.'>');
 
         foreach ($litList as $lit) {
             $this->graph->addLiteral($res, $prop, $lit);
@@ -512,9 +512,9 @@ 
                 // if not found in current vocabulary, look up in the default graph to be able
                 // to read an ontology loaded in a separate graph
                 // note that this imply that the property has an rdf:type declared for the query to work
-                if(!$proplabel) {
+                if (!$proplabel) {
                     $envLangLabels = $this->model->getDefaultSparql()->queryLabel($longUri, $this->getEnvLang());
-                    $proplabel = ($envLangLabels)?$envLangLabels[$this->getEnvLang()]:$this->model->getDefaultSparql()->queryLabel($longUri, '')[''];
+                    $proplabel = ($envLangLabels) ? $envLangLabels[$this->getEnvLang()] : $this->model->getDefaultSparql()->queryLabel($longUri, '')[''];
                 }
 
                 // look for superproperties in the current graph
@@ -524,12 +524,12 @@ 
                 }
 
                 // also look up superprops in the default graph if not found in current vocabulary
-                if(!$superprops || empty($superprops)) {
+                if (!$superprops || empty($superprops)) {
                     $superprops = $this->model->getDefaultSparql()->querySuperProperties($longUri);
                 }
 
                 // we're reading only one super property, even if there are multiple ones
-                $superprop = ($superprops)?$superprops[0]:null;
+                $superprop = ($superprops) ? $superprops[0] : null;
                 if ($superprop) {
                     $superprop = EasyRdf\RdfNamespace::shorten($superprop) ? EasyRdf\RdfNamespace::shorten($superprop) : $superprop;
                 }
@@ -541,7 +541,7 @@ 
                 }
 
                 // searching for subproperties of literals too
-                if($superprops) {
+                if ($superprops) {
                     foreach ($superprops as $subi) {
                         $suburi = EasyRdf\RdfNamespace::shorten($subi) ? EasyRdf\RdfNamespace::shorten($subi) : $subi;
                         $duplicates[$suburi] = $prop;
@@ -661,14 +661,14 @@ 
 
             // making a human readable string from the timestamps
             if ($created != '') {
-                $ret = gettext('skosmos:created') . ' ' . (Punic\Calendar::formatDate($created, 'short'));
+                $ret = gettext('skosmos:created').' '.(Punic\Calendar::formatDate($created, 'short'));
             }
 
             if ($modified != '') {
                 if ($created != '') {
-                    $ret .= ', ' . gettext('skosmos:modified') . ' ' . (Punic\Calendar::formatDate($modified, 'short'));
+                    $ret .= ', '.gettext('skosmos:modified').' '.(Punic\Calendar::formatDate($modified, 'short'));
                 } else {
-                    $ret .= ' ' . ucfirst(gettext('skosmos:modified')) . ' ' . (Punic\Calendar::formatDate($modified, 'short'));
+                    $ret .= ' '.ucfirst(gettext('skosmos:modified')).' '.(Punic\Calendar::formatDate($modified, 'short'));
                 }
 
             }
@@ -676,12 +676,12 @@ 
             trigger_error($e->getMessage(), E_USER_WARNING);
             $ret = '';
             if ($this->resource->get('dc:modified')) {
-                $modified = (string) $this->resource->get('dc:modified');
-                $ret = gettext('skosmos:modified') . ' ' . $modified;
+                $modified = (string)$this->resource->get('dc:modified');
+                $ret = gettext('skosmos:modified').' '.$modified;
             }
             if ($this->resource->get('dc:created')) {
-                $created .= (string) $this->resource->get('dc:created');
-                $ret .= ' ' . gettext('skosmos:created') . ' ' . $created;
+                $created .= (string)$this->resource->get('dc:created');
+                $ret .= ' '.gettext('skosmos:created').' '.$created;
             }
         }
         return $ret;
@@ -791,7 +791,7 @@ 
         $ret = array();
         foreach ($labels as $lit) {
             // filtering away subsets of the current language eg. en vs en-GB
-            if ($lit->getLang() != $this->clang && strpos($lit->getLang(), $this->getEnvLang() . '-') !== 0) {
+            if ($lit->getLang() != $this->clang && strpos($lit->getLang(), $this->getEnvLang().'-') !== 0) {
                 $prop = in_array($lit, $prefLabels) ? 'skos:prefLabel' : 'skos:altLabel';
                 $ret[$this->literalLanguageToString($lit)][] = new ConceptPropertyValueLiteral($this->model, $this->vocab, $this->resource, $lit, $prop);
             }
@@ -853,10 +853,10 @@ 
             }
             else if ($context[$vocabPrefix] !== $vocabUriSpace) {
                 $i = 2;
-                while (isset($context[$vocabPrefix . $i]) && $context[$vocabPrefix . $i] !== $vocabUriSpace) {
+                while (isset($context[$vocabPrefix.$i]) && $context[$vocabPrefix.$i] !== $vocabUriSpace) {
                     $i += 1;
                 }
-                $context[$vocabPrefix . $i] = $vocabUriSpace;
+                $context[$vocabPrefix.$i] = $vocabUriSpace;
             }
         }
         $compactJsonLD = \ML\JsonLD\JsonLD::compact($this->graph->serialise('jsonld'), json_encode($context));

Braces +2 added lines, -4 removed lines

@@ -312,8 +312,7 @@ 
             foreach ($res->propertyUris() as $prop) {
                 $this->addPropertyValues($res, $prop, $seen);
             }
-        }
-        else {
+        } else {
             foreach ($props as $prop) {
                 if ($res->hasProperty($prop)) {
                     $this->addPropertyValues($res, $prop, $seen);
@@ -850,8 +849,7 @@ 
         if (!in_array($vocabUriSpace, $context, true)) {
             if (!isset($context[$vocabPrefix])) {
                 $context[$vocabPrefix] = $vocabUriSpace;
-            }
-            else if ($context[$vocabPrefix] !== $vocabUriSpace) {
+            } else if ($context[$vocabPrefix] !== $vocabUriSpace) {
                 $i = 2;
                 while (isset($context[$vocabPrefix . $i]) && $context[$vocabPrefix . $i] !== $vocabUriSpace) {
                     $i += 1;

model/sparql/JenaTextSparql.php

Spacing +7 added lines, -7 removed lines

@@ -40,7 +40,7 @@ 
         // 1. Ensure characters with special meaning in Lucene are escaped
         $lucenemap = array();
         foreach (str_split(self::LUCENE_ESCAPE_CHARS) as $char) {
-            $lucenemap[$char] = '\\' . $char; // escape with a backslash
+            $lucenemap[$char] = '\\'.$char; // escape with a backslash
         }
         $term = strtr($term, $lucenemap);
 
@@ -82,7 +82,7 @@ 
      * @return string sparql order by clause
      */
     private function formatOrderBy($expression, $lang) {
-        if(!$this->model->getConfig()->getCollationEnabled()) {
+        if (!$this->model->getConfig()->getCollationEnabled()) {
             return $expression;
         }
         $orderby = sprintf('arq:collation(\'%2$s\', %1$s)', $expression, $lang);
@@ -114,13 +114,13 @@ 
 
         # make text query clause
         $lcletter = mb_strtolower($letter, 'UTF-8'); // convert to lower case, UTF-8 safe
-        $textcondPref = $this->createTextQueryCondition($letter . '*', 'skos:prefLabel', $lang);
-        $textcondAlt = $this->createTextQueryCondition($letter . '*', 'skos:altLabel', $lang);
+        $textcondPref = $this->createTextQueryCondition($letter.'*', 'skos:prefLabel', $lang);
+        $textcondAlt = $this->createTextQueryCondition($letter.'*', 'skos:altLabel', $lang);
         $orderbyclause = $this->formatOrderBy("LCASE(?match)", $lang);
 
-        $filterDeprecated="";
-        if(!$showDeprecated){
-            $filterDeprecated="FILTER NOT EXISTS { ?s owl:deprecated true }";
+        $filterDeprecated = "";
+        if (!$showDeprecated) {
+            $filterDeprecated = "FILTER NOT EXISTS { ?s owl:deprecated true }";
         }
         
         $query = <<<EOQ

model/Model.php

Spacing +12 added lines, -12 removed lines

@@ -64,15 +64,15 @@ 
     private function initializeVocabularies()
     {
         if (!file_exists($this->getConfig()->getVocabularyConfigFile())) {
-            throw new Exception($this->getConfig()->getVocabularyConfigFile() . ' is missing, please provide one.');
+            throw new Exception($this->getConfig()->getVocabularyConfigFile().' is missing, please provide one.');
         }
 
         try {
             // use APC user cache to store parsed vocabularies.ttl configuration
             if ($this->cache->isAvailable()) {
                 // @codeCoverageIgnoreStart
-                $key = realpath($this->getConfig()->getVocabularyConfigFile()) . ", " . filemtime($this->getConfig()->getVocabularyConfigFile());
-                $nskey = "namespaces of " . $key;
+                $key = realpath($this->getConfig()->getVocabularyConfigFile()).", ".filemtime($this->getConfig()->getVocabularyConfigFile());
+                $nskey = "namespaces of ".$key;
                 $this->graph = $this->cache->fetch($key);
                 $this->namespaces = $this->cache->fetch($nskey);
                 if ($this->graph === false || $this->namespaces === false) { // was not found in cache
@@ -85,7 +85,7 @@ 
                 $this->parseVocabularies($this->getConfig()->getVocabularyConfigFile());
             }
         } catch (Exception $e) {
-            echo "Error: " . $e->getMessage();
+            echo "Error: ".$e->getMessage();
         }
     }
 
@@ -297,18 +297,18 @@ 
         }
 
         $vocabs = $params->getVocabs();
-        $showDeprecated=false;
+        $showDeprecated = false;
         if (sizeof($vocabs) === 1) { // search within vocabulary
             $voc = $vocabs[0];
             $sparql = $voc->getSparql();
-            $showDeprecated=$voc->getConfig()->getShowDeprecated();
+            $showDeprecated = $voc->getConfig()->getShowDeprecated();
         } else { // multi-vocabulary or global search
             $voc = null;
             $sparql = $this->getDefaultSparql();
             // @TODO : in a global search showDeprecated will always be false and cannot be set globally
         }
 
-        $results = $sparql->queryConcepts($vocabs, $params->getAdditionalFields(), $params->getUnique(), $params,$showDeprecated);
+        $results = $sparql->queryConcepts($vocabs, $params->getAdditionalFields(), $params->getUnique(), $params, $showDeprecated);
         if ($params->getRest() && $results && $params->getSearchLimit() !== 0) {
           $results = array_slice($results, $params->getOffset(), $params->getSearchLimit());
         }
@@ -458,7 +458,7 @@ 
     public function getVocabularyCategories()
     {
         $cats = $this->graph->allOfType('skos:Concept');
-        if(empty($cats)) {
+        if (empty($cats)) {
             return array(new VocabularyCategory($this, null));
         }
 
@@ -541,9 +541,9 @@ 
         }
         
         // if there are multiple vocabularies and one is the preferred vocabulary, return it
-        if($preferredVocabId != null) {
+        if ($preferredVocabId != null) {
             foreach ($vocabs as $vocab) {
-                if($vocab->getId() == $preferredVocabId) {
+                if ($vocab->getId() == $preferredVocabId) {
                     return $vocab;
                 }
             }
@@ -643,7 +643,7 @@ 
         // using apc cache for the resource if available
         if ($this->cache->isAvailable()) {
             // @codeCoverageIgnoreStart
-            $key = 'fetch: ' . $uri;
+            $key = 'fetch: '.$uri;
             $resource = $this->cache->fetch($key);
             if ($resource === null || $resource === false) { // was not found in cache, or previous request failed
                 $resource = $this->fetchResourceFromUri($uri);
@@ -664,7 +664,7 @@ 
      */
     public function getSparqlImplementation($dialect, $endpoint, $graph)
     {
-        $classname = $dialect . "Sparql";
+        $classname = $dialect."Sparql";
 
         return new $classname($endpoint, $graph, $this);
     }

Braces +9 added lines, -4 removed lines

@@ -108,10 +108,12 @@ 
     
     private function initializeNamespaces() {
         foreach ($this->namespaces as $prefix => $fullUri) {
-            if ($prefix != '' && EasyRdf\RdfNamespace::get($prefix) === null) // if not already defined
+            if ($prefix != '' && EasyRdf\RdfNamespace::get($prefix) === null) {
+              // if not already defined
             {
                 EasyRdf\RdfNamespace::set($prefix, $fullUri);
             }
+            }
         }
     }
     
@@ -425,10 +427,12 @@ 
                 // register vocabulary ids as RDF namespace prefixes
                 $prefix = preg_replace('/\W+/', '', $voc->getId()); // strip non-word characters
                 try {
-                    if ($prefix != '' && EasyRdf\RdfNamespace::get($prefix) === null) // if not already defined
+                    if ($prefix != '' && EasyRdf\RdfNamespace::get($prefix) === null) {
+                      // if not already defined
                     {
                         EasyRdf\RdfNamespace::set($prefix, $voc->getUriSpace());
                     }
+                    }
 
                 } catch (Exception $e) {
                     // not valid as namespace identifier, ignore
@@ -551,8 +555,9 @@ 
         
         // no preferred vocabulary, or it was not found, search in which vocabulary the concept has a label
         foreach ($vocabs as $vocab) {
-            if ($vocab->getConceptLabel($uri, null) !== null)
-                return $vocab;
+            if ($vocab->getConceptLabel($uri, null) !== null) {
+                            return $vocab;
+            }
         }
 
         // if the URI couldn't be found, fall back to the first vocabulary

model/ConceptPropertyValue.php

Doc Comments +6 added lines

@@ -12,6 +12,9 @@ 
     /** content language */
     private $clang;
 
+    /**
+     * @param Model $model
+     */
     public function __construct($model, $vocab, $resource, $prop, $clang = '')
     {
         parent::__construct($model, $vocab, $resource);
@@ -76,6 +79,9 @@ 
         return $this->vocab->getTitle();
     }
 
+    /**
+     * @param ConceptPropertyValue $member
+     */
     public function addSubMember($member, $lang = '')
     {
         $label = $member->getLabel($lang) ? $member->getLabel($lang) : $member->getLabel();

Spacing +4 added lines, -4 removed lines

@@ -24,7 +24,7 @@ 
     {
         $label = is_string($this->getLabel()) ? $this->getLabel() : $this->getLabel()->getValue();
         if ($this->vocab->getConfig()->sortByNotation()) {
-            $label = $this->getNotation() . $label;
+            $label = $this->getNotation().$label;
         }
 
         return $label;
@@ -47,9 +47,9 @@ 
                 }
                 // We need to check all the labels in case one of them matches a subtag of the current language
                 if ($this->resource->allLiterals('skos:prefLabel')) {
-                    foreach($this->resource->allLiterals('skos:prefLabel') as $label) {
+                    foreach ($this->resource->allLiterals('skos:prefLabel') as $label) {
                         // the label lang code is a subtag of the UI lang eg. en-GB - create a new literal with the main language
-                        if ($label !== null && strpos($label->getLang(), $fallback . '-') === 0) {
+                        if ($label !== null && strpos($label->getLang(), $fallback.'-') === 0) {
                             return EasyRdf\Literal::create($label, $fallback);
                         }
                     }
@@ -137,7 +137,7 @@ 
     public function getReifiedPropertyValues() {
         $ret = array();
         $props = $this->resource->propertyUris();
-        foreach($props as $prop) {
+        foreach ($props as $prop) {
             $prop = (EasyRdf\RdfNamespace::shorten($prop) !== null) ? EasyRdf\RdfNamespace::shorten($prop) : $prop;
             foreach ($this->resource->allLiterals($prop) as $val) {
                 if ($prop !== 'rdf:value' && $this->resource->get($prop)) { // shown elsewhere

model/ConceptPropertyValueLiteral.php

Doc Comments +3 added lines

@@ -10,6 +10,9 @@
     /** property type */
     private $type;
 
+    /**
+     * @param EasyRdf\Resource $resource
+     */
     public function __construct($model, $vocab, $resource, $literal, $prop)
     {
         parent::__construct($model, $vocab, $resource);

Spacing +2 added lines, -2 removed lines

@@ -49,7 +49,7 @@ 
                 return Punic\Calendar::formatDate($val, 'short');
             } catch (Exception $e) {
                 trigger_error($e->getMessage(), E_USER_WARNING);
-                return (string) $this->literal;
+                return (string)$this->literal;
             }
         }
         return $this->literal->getValue();
@@ -80,7 +80,7 @@ 
         $resources = $graph->resourcesMatching('skosxl:literalForm', $this->literal);
         foreach ($resources as $xlres) {
             foreach ($xlres->properties() as $prop) {
-                foreach($graph->allLiterals($xlres, $prop) as $val) {
+                foreach ($graph->allLiterals($xlres, $prop) as $val) {
                     if ($prop !== 'rdf:type') {
                         $ret[$prop] = $val;
                     }